g.arboreum_cottongen_reftransV1_0000546, g.arboreum_cottongen_reftransV1_0000546 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0000546
Unique Name	g.arboreum_cottongen_reftransV1_0000546
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	557

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis
Chr5	chromosome	g.arboreum_cottongen_reftransV1_0000546:1..557 . Chr5:18895216..18895876 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A0A0K2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051430 PE=4 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.255e-76
Identity = 120/140 (85.71%), Postives = 127/140 (90.71%), Query Frame = -3

Query:    1 LYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 420
            LYEAYNELHGLAQE   PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C+ P+C+LVSDDDPT A  KSL +IQA+IEAENMRLE E  QFSAKEIIIKV+YK+CPNLTIIDTPGLIAPA
Sbjct:   17 LYEAYNELHGLAQEFHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPDCETPVCHLVSDDDPTAAIHKSLHEIQAFIEAENMRLESETSQFSAKEIIIKVEYKYCPNLTIIDTPGLIAPA 156

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: F4JCC8_ARATH (Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=4 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.666e-76
Identity = 122/156 (78.21%), Postives = 134/156 (85.90%), Query Frame = -3

Query:    1 EMEEE---TLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQ-FSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 456
            EM EE    +    +LYEAYNELH LAQELE PF+APAVLVVG QTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C  PLC+L SDDDP+++  KSL+ IQAYIEAENMRLE+EPC  FSAKEII+KV+YK+CPNLTIIDTPGLIAPA
Sbjct:   13 EMAEEDDAAIEERWSLYEAYNELHALAQELETPFEAPAVLVVGQQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVSLPKSLSQIQAYIEAENMRLEQEPCSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPA 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A078HZK5_BRANA (BnaA01g25920D protein OS=Brassica napus GN=BnaA01g25920D PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.357e-75
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = -3

Query:    1 TLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 423
            +LYEAYNELH LAQELE PF+APAVLVVG QTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C  PLC+L SDDDP++A  KSL+ IQAYIEAENMRLE+EP  FSAKEII+KV+YK+CPNLTIIDTPGLIAPA
Sbjct:   29 SLYEAYNELHALAQELETPFEAPAVLVVGQQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVALPKSLSQIQAYIEAENMRLEQEPSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPA 169

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: M4FAW4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra038229 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.357e-75
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = -3

Query:    1 TLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 423
            +LYEAYNELH LAQELE PF+APAVLVVG QTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C  PLC+L SDDDP++A  KSL+ IQAYIEAENMRLE+EP  FSAKEII+KV+YK+CPNLTIIDTPGLIAPA
Sbjct:   29 SLYEAYNELHALAQELETPFEAPAVLVVGQQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVALPKSLSQIQAYIEAENMRLEQEPSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPA 169

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A078H7E6_BRANA (BnaC01g33110D protein OS=Brassica napus GN=BnaC01g33110D PE=4 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.135e-75
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = -3

Query:    1 TLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 423
            +LYEAYNELH LAQELE PF+APAVLVVG QTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C  PLC+L SDDDP++A  KSL+ IQAYIEAENMRLE+EP  FSAKEII+KV+YK+CPNLTIIDTPGLIAPA
Sbjct:   29 SLYEAYNELHALAQELETPFEAPAVLVVGQQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVALPKSLSQIQAYIEAENMRLEQEPSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPA 169

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: ARC5_ARATH (Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.017e-77
Identity = 122/156 (78.21%), Postives = 134/156 (85.90%), Query Frame = -3

Query:    1 EMEEE---TLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQ-FSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 456
            EM EE    +    +LYEAYNELH LAQELE PF+APAVLVVG QTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C  PLC+L SDDDP+++  KSL+ IQAYIEAENMRLE+EPC  FSAKEII+KV+YK+CPNLTIIDTPGLIAPA
Sbjct:   13 EMAEEDDAAIEERWSLYEAYNELHALAQELETPFEAPAVLVVGQQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVSLPKSLSQIQAYIEAENMRLEQEPCSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPA 168

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DRP5A_ARATH (Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.440e-21
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = -3

Query:    1 SKIETEMEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDD----PTLAHEKSLAD-IQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 471
            SK+++  ++       + +EAYN L   A         P ++ +G Q+DGKS+L+EAL+GF+FN       TRRP+ L M +D     P C    +D       +    ++AD I++  EA    L++     S K I+++ +Y HCPNLTIIDTPG +  A
Sbjct:   25 SKMQSHSKDPINAESRSRFEAYNRLQAAAVAFGEKLPIPEIVAIGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDLSALEPRCRFQDEDSEEYGSPIVSATAVADVIRSRTEA---LLKKTKTAVSPKPIVMRAEYAHCPNLTIIDTPGFVLKA 183

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DLPC_DICDI (Dynamin-like protein C OS=Dictyostelium discoideum GN=dlpC PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.218e-15
Identity = 55/204 (26.96%), Postives = 89/204 (43.63%), Query Frame = -3

Query:   13 SKIETEMEE----ETLNPHST--LYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDD--------------------------------------------DPTLAHEKSLADI-QAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 471
            +K+E E ++    E++N  +   LY  +N+L  ++ +    FD P ++VVG Q+DGKS+ +E+L+GFQFN V     TRRP+ + M  +P    P C    +D                                            D    +E  + ++ +  I   N R  R   + S+  I ++V++ HC NL I DTPG 
Sbjct:   79 TKLENERKKLDDSESINASTNQELYSLFNDLQMISHDHNISFDTPELVVVGMQSDGKSSFIESLLGFQFNIVETNIGTRRPLIIQMINNPSKQQPSCRFKKEDYSNSYGGSSSSTSTTSGNSNHNTDKQQNVSSSQGGGGGSNNLNEDKWEEYETPVNELTEEIIRRTNERTGRAGDRVSSIPIFLRVEFAHCSNLNIYDTPGF 282

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 8.911e-10
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = -3

Query:   13 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPT-----LAHEKS-----LADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 369
            P D P ++VVG Q+ GKS+++E ++G  F   G G  TRRP+ L +++ P+ D        D   T       H+ +      ++I+  I  +  R+  +    SA+ I +K+   H  NLT++D PG+
Sbjct:   22 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIAD--------DGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGI 142

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGM1 PE=1 SV=3)

HSP 1 Score: 56.225 bits (134), Expect = 2.838e-8
Identity = 43/152 (28.29%), Postives = 76/152 (50.00%), Query Frame = -3

Query:   10 EEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLERE---PCQFSAKE--IIIKVKYKHCPNLTIIDTPGLI 450
            ++E LN    + E    L+ +     A    P+++V+G Q+ GKS+++E+++G +F   G    TRRPI L      L + P    V+ D P++     L +I+ + E + M +E     P   +  E  I + +K    P+L+++D PG I
Sbjct:  181 QDEMLNLTKQMIEIRTILNKVDSS-SAHLTLPSIVVIGSQSSGKSSVLESIVGREFLPKGSNMVTRRPIEL-----TLVNTPNSNNVTADFPSM----RLYNIKDFKEVKRMLMELNMAVPTSEAVSEEPIQLTIKSSRVPDLSLVDLPGYI 322

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DLPB_DICDI (Dynamin-like protein B OS=Dictyostelium discoideum GN=dlpB PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.880e-8
Identity = 36/142 (25.35%), Postives = 73/142 (51.41%), Query Frame = -3

Query:   13 HSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSD---DDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 429
            +  +Y+AYN++  LA++L A  + P  + +G   +GKSAL+E+ +GF    +G G+ + RP+ + +  +  C+ P+     D   D      +  L+ + + I   N        Q ++  I I ++Y++  N+ +I+ P +
Sbjct:   23 YDDMYKAYNKIMVLARDLNAFIETPEFVFIGKDGNGKSALIESFIGFPM-MIGEGS-SLRPLHITLMNNARCEEPIVTFKRDRSLDSYEFDRQIELSMVSSEISKRN--------QKTSIPIEITIEYRYYLNMLLIEPPSV 154

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 7.872e-8
Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = -3

Query:   13 STLYEAYNELHGLAQEL--EAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPT----LAHEK--SLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 426
            S++    N+L  +  +L  ++    P V+VVG Q+ GKS+++EAL+G  F   G    TRRP+ L +    L         SDD+      L   +    ++I+  IEAE  RL  E    +  +I +K+   +  N+T++D PG+
Sbjct:   35 SSVIPIVNKLQDIFAQLGSQSTIALPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQL----LQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGI 176

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.707e-7
Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = -3

Query:   13 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 366
             D P + VVG Q+ GKS+++E  +G  F   G G  TRRP+ L + +         +  S             +++  IEAE  R+       S   I ++V   H  NLT+ID PG+
Sbjct:   29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIFSKTEHAEFLHCKS------KKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI 140

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 1.933e-7
Identity = 40/122 (32.79%), Postives = 57/122 (46.72%), Query Frame = -3

Query:    1 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAY---IEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 357
            P V VVG Q+ GKS+++E+++G  F   G G  TRRP+ L +             +       A +K  AD  A    IE E  R+  +  Q S   I + +   +  NLT+ID PGL   A
Sbjct:   36 PTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLH------APKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVA 151

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 2.476e-7
Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = -3

Query:   13 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 366
             D P + VVG Q+ GKS+++E  +G  F   G G  TRRP+ L + +         +  S             +++  IEAE  R+       S   I ++V   H  NLT+ID PG+
Sbjct:   29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIFSKTEYAEFLHCKS------KKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI 140

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0A0K2F7_CUCSA	7.255e-76	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
F4JCC8_ARATH	7.666e-76	78.21	Dynamin-like protein ARC5 OS=Arabidopsis thaliana ...	[more]
A0A078HZK5_BRANA	1.357e-75	83.69	BnaA01g25920D protein OS=Brassica napus GN=BnaA01g...	[more]
M4FAW4_BRARP	1.357e-75	83.69	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078H7E6_BRANA	2.135e-75	83.69	BnaC01g33110D protein OS=Brassica napus GN=BnaC01g...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 16


Match Name	E-value	Identity	Description
ARC5_ARATH	1.017e-77	78.21	Dynamin-like protein ARC5 OS=Arabidopsis thaliana ...	[more]
DRP5A_ARATH	3.440e-21	34.57	Dynamin-related protein 5A OS=Arabidopsis thaliana...	[more]
DLPC_DICDI	1.218e-15	26.96	Dynamin-like protein C OS=Dictyostelium discoideum...	[more]
DYNA_DICDI	8.911e-10	30.23	Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1...	[more]
MGM1_YEAST	2.838e-8	28.29	Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar...	[more]
DLPB_DICDI	2.880e-8	25.35	Dynamin-like protein B OS=Dictyostelium discoideum...	[more]
DRP3A_ARATH	7.872e-8	30.14	Dynamin-related protein 3A OS=Arabidopsis thaliana...	[more]
DYN2_HUMAN	1.707e-7	30.51	Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2	[more]
DRP1C_ARATH	1.933e-7	32.79	Dynamin-related protein 1C OS=Arabidopsis thaliana...	[more]
DYN2_MOUSE	2.476e-7	30.51	Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022812	Dynamin superfamily	PRINTS	PR00195	DYNAMIN	coord: 133..150 score: 40.36 coord: 32..50 score: 47.8 coord: 57..74 score: 39.8
IPR022812	Dynamin superfamily	PFAM	PF00350	Dynamin_N	coord: 35..149 e-value: 2.8E-22 score: 79.4
IPR022812	Dynamin superfamily	PANTHER	PTHR11566	DYNAMIN	coord: 3..151
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..150 e-value: 1.9E-34 score: 118.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..149
None	No IPR available	PANTHER	PTHR11566:SF78	DYNAMIN-LIKE PROTEIN ARC5	coord: 3..151
IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	PROSITE	PS51718	G_DYNAMIN_2	coord: 29..151 score: 37.619

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0000546 ID=g.arboreum_cottongen_reftransV1_0000546; Name=g.arboreum_cottongen_reftransV1_0000546; organism=Gossypium arboreum; type=contig; length=557bp
AGCAGGAGCAATAAGCCCAGGAGTATCAATAATAGTCAAATTGGGACAGT
GTTTGTATTTCACTTTAATGATGATTTCTTTAGCTGAGAATTGACATGGC
TCACGTTCCAACCTCATATTTTCAGCTTCGATGTAGGCCTGAATATCGGC
GAGAGATTTTTCGTGGGCGAGAGTGGGGTCATCGTCAGAGACGAGATAAC
ACAATGGGACGTCGCAAAGAGGGTCGTAAGACATATGAAGAGTGATGGGT
CGGCGAGTCTTTGTTCCGCCGCCGACGTGGTTGAATTGGAAGCCCATGAG
TGCTTCGACCAACGCACTTTTGCCGTCCGTTTGGTGTCCAACGACTAACA
CAGCCGGCGCGTCGAAGGGAGCTTCTAGCTCTTGAGCTAGACCGTGAAGC
TCGTTGTAGGCCTCGTAGAGAGTTGAGTGTGGGTTCAGTGTTTCTTCCTC
CATTTCAGTTTCTATTTTACTTGCTTAGTCCTAAGCCTTAGGCTTAGCCA
CTGCTCTGCTTCATAGTAGTCACTGTAGGGTGAATGAAAGCGAAACTACC
TTTTTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR022812	Dynamin
IPR027417	P-loop_NTPase
IPR030381	G_DYNAMIN_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Search form

g.arboreum_cottongen_reftransV1_0000546, g.arboreum_cottongen_reftransV1_0000546 (contig) Gossypium arboreum

Pages

Pages