g.arboreum_cottongen_reftransV1_0000546, g.arboreum_cottongen_reftransV1_0000546 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A0B0MY77_GOSAR (Dynamin-like protein ARC5 OS=Gossypium arboreum GN=F383_28613 PE=4 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 1.993e-101 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = -3 Query: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 453 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA Sbjct: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 151
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A0D2NGQ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G217700 PE=4 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 1.077e-100 Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = -3 Query: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 453 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLC+LVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA Sbjct: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCHLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 151
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A061E9A3_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Theobroma cacao GN=TCM_007541 PE=4 SV=1) HSP 1 Score: 308.145 bits (788), Expect = 1.244e-96 Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = -3 Query: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 453 MEEETLNPHSTLYEAYN+LHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITL MSYDPLCDVPLC+LVSD+DPTLAHEKSL +IQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA Sbjct: 1 MEEETLNPHSTLYEAYNDLHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLQMSYDPLCDVPLCHLVSDEDPTLAHEKSLPEIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 151
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A067KRP4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05043 PE=4 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.084e-81 Identity = 126/141 (89.36%), Postives = 133/141 (94.33%), Query Frame = -3 Query: 1 TLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 423 TLYEAYNELHGLAQEL PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C+VP+C+LVSDDDPTLA EKSL +IQAYIE+ENMRLERE CQFSAKEIII+V+YK CPNLTIIDTPGLIAPA Sbjct: 12 TLYEAYNELHGLAQELNTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCEVPVCHLVSDDDPTLAQEKSLHEIQAYIESENMRLERETCQFSAKEIIIRVEYKFCPNLTIIDTPGLIAPA 152
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: K4CZX0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g047050.1 PE=4 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 1.847e-80 Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = -3 Query: 1 LNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 438 L LYEAYNELHGLAQE + PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM Y+P CD PLC+L+SD DP+++HEKSL DIQAYIEAENMRLE+E CQFSAKEIII+++YK+CPNLTIIDTPGL+APA Sbjct: 18 LEGQWRLYEAYNELHGLAQEFDTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPECDTPLCHLLSDSDPSVSHEKSLQDIQAYIEAENMRLEKETCQFSAKEIIIRIEYKYCPNLTIIDTPGLVAPA 163
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: M1A3N1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005500 PE=4 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 1.886e-80 Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = -3 Query: 1 LNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 438 L LYEAYNELHGLAQE + PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM Y+P CD PLC+L+SD DP+++HEKSL DIQAYIEAENMRLE+E CQFSAKEIII+++YK+CPNLTIIDTPGL+APA Sbjct: 18 LEGQWRLYEAYNELHGLAQEFDTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPECDTPLCHLLSDSDPSVSHEKSLQDIQAYIEAENMRLEKETCQFSAKEIIIRIEYKYCPNLTIIDTPGLVAPA 163
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A022PUM8_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0017942mg PE=4 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 2.111e-80 Identity = 118/148 (79.73%), Postives = 131/148 (88.51%), Query Frame = -3 Query: 1 ETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 444 ET LYEAYNELHGLAQE PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM ++P CD PLC+L+S+ DP++ EKSL +IQAYIEAENMRLEREP QFS+KEIII+++YK+CPNLTIIDTPGLIAPA Sbjct: 18 ETEEGQWKLYEAYNELHGLAQEFSTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKFNPDCDTPLCHLLSESDPSIPQEKSLQEIQAYIEAENMRLEREPYQFSSKEIIIRIEYKYCPNLTIIDTPGLIAPA 165
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: A0A059ATQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02694 PE=4 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 6.816e-80 Identity = 122/143 (85.31%), Postives = 132/143 (92.31%), Query Frame = -3 Query: 1 HSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 429 S+LYEAYNELHGLAQE + PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM +DP CD PLC+LVSD DP L+ + SL +IQAYIEAENMRLEREPCQFS+KEIIIKV+YK+CPNLTIIDTPGLIAPA Sbjct: 18 QSSLYEAYNELHGLAQEFDTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMRFDPSCDDPLCHLVSDADPALSRQLSLHEIQAYIEAENMRLEREPCQFSSKEIIIKVEYKYCPNLTIIDTPGLIAPA 160
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: G5DCB5_MANES (ARC5 protein OS=Manihot esculenta GN=ARC5 PE=2 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 1.122e-79 Identity = 120/151 (79.47%), Postives = 133/151 (88.08%), Query Frame = -3 Query: 1 MEEETLNPHSTLYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 453 M + + +LYEAYNELHGLAQELE PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C+VP+C+L+SDDDP EK L +IQA+IE+ENMRLERE CQFSAKEIII+V YK+CPNLTIIDTPGL+APA Sbjct: 1 MTRDAVQEQWSLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCEVPVCHLMSDDDPAFVQEKPLHEIQAFIESENMRLERELCQFSAKEIIIRVDYKYCPNLTIIDTPGLVAPA 151
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Match: F6H1S1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00490 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 2.027e-79 Identity = 121/140 (86.43%), Postives = 130/140 (92.86%), Query Frame = -3 Query: 1 LYEAYNELHGLAQELEAPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 420 LYEAYNELHGLAQE E PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM YDP C+ PLC+L+SD DPT+ E SL +IQAYIEAENMRLEREPCQFSAKEIII+V+YK+CPNLTIIDTPGL+APA Sbjct: 20 LYEAYNELHGLAQEFETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPDCEAPLCHLLSDSDPTVPQEMSLQEIQAYIEAENMRLEREPCQFSAKEIIIRVEYKYCPNLTIIDTPGLVAPA 159
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.614e-7 Identity = 36/118 (30.51%), Postives = 54/118 (45.76%), Query Frame = -3 Query: 13 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 366 D P + VVG Q+ GKS+++E +G F G G TRRP+ L + + + S +++ IEAE R+ S I ++V H NLT+ID PG+ Sbjct: 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIFSKTEYAEFLHCKS------KKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI 140
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 2.785e-7 Identity = 41/134 (30.60%), Postives = 70/134 (52.24%), Query Frame = -3 Query: 1 GLAQELEAPFDA-PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT--LHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGLIAPA 393 G + L + ++A P+V VVG Q+ GKS+++E+++G F G G TRRP+ LH + + D +++ T + + ++ IE E R+ + Q S+ I + + + NLT+ID PGL A Sbjct: 23 GDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFT-----NFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVA 151
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msp1 PE=3 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 3.100e-7 Identity = 38/136 (27.94%), Postives = 65/136 (47.79%), Query Frame = -3 Query: 10 ELHGLAQELEAPFDA---PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKE--IIIKVKYKHCPNLTIIDTPGLI 402 E+ + Q+++ A P+++V+G Q+ GKS+++EA++G +F G TRRPI L + + +P L + IQ + NM + P + I + + H PNL++ID PG I Sbjct: 246 EIRNILQDIQDNNSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPYGEF---SGVQLGKITDFSKIQHILTDLNMAV---PSSQGVDDNPIRLTIYASHIPNLSLIDLPGYI 375
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 3.279e-7 Identity = 35/118 (29.66%), Postives = 54/118 (45.76%), Query Frame = -3 Query: 13 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMSYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 366 D P + VVG Q+ GKS+++E +G F G G TRRP+ L + + + S +++ IEAE R+ S I +++ H NLT+ID PG+ Sbjct: 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIFSKTEYAEFLHCKS------RKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLRIYSPHVLNLTLIDLPGI 140
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 7.395e-7 Identity = 38/122 (31.15%), Postives = 56/122 (45.90%), Query Frame = -3 Query: 13 APFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM--SYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 372 A D P + VVG Q+ GKS+++E +G F G G TRRP+ L + S + C D +++ IEAE R+ S I ++V H NLT++D PG+ Sbjct: 27 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD--------FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGM 140
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 7.737e-7 Identity = 38/122 (31.15%), Postives = 56/122 (45.90%), Query Frame = -3 Query: 13 APFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHM--SYDPLCDVPLCYLVSDDDPTLAHEKSLADIQAYIEAENMRLEREPCQFSAKEIIIKVKYKHCPNLTIIDTPGL 372 A D P + VVG Q+ GKS+++E +G F G G TRRP+ L + S + C D +++ IEAE R+ S I ++V H NLT++D PG+ Sbjct: 27 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD--------FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGM 140 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0000546 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 16
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000546 ID=g.arboreum_cottongen_reftransV1_0000546; Name=g.arboreum_cottongen_reftransV1_0000546; organism=Gossypium arboreum; type=contig; length=557bpback to top |