g.arboreum_cottongen_reftransV1_0008963, g.arboreum_cottongen_reftransV1_0008963 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008963
Unique Nameg.arboreum_cottongen_reftransV1_0008963
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0008963:1..466 .
Chr3:79604347..79604901 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A078CWI1_BRANA (BnaC07g30500D protein OS=Brassica napus GN=BnaC07g30500D PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.829e-54
Identity = 118/155 (76.13%), Postives = 142/155 (91.61%), Query Frame = 2 
Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA++ADLSTGE GI ALAFGCTRLFQP+KPVTKAQAA+A++ GEASD+V EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKELS+EREKI+A EKMAE+ K ELE++R +REEEN+VL+K+RAA+ +E ++LSRLRRE EE+LE +
Sbjct:  573 PDAWPAIIADLSTGEQGIAALAFGCTRLFQPHKPVTKAQAAIALSNGEASDIVIEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAEQVKLELEQLREKREEENLVLVKERAAVESEMEVLSRLRREAEEKLEDL 727
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BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: A0A0D3DD88_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.829e-54
Identity = 118/155 (76.13%), Postives = 142/155 (91.61%), Query Frame = 2 
Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA++ADLSTGE GI ALAFGCTRLFQP+KPVTKAQAA+A++ GEASD+V EELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKELS+EREKI+A EKMAE+ K ELE++R +REEEN+VL+K+RAA+ +E ++LSRLRRE EE+LE +
Sbjct:  573 PDAWPAIIADLSTGEQGIAALAFGCTRLFQPHKPVTKAQAAIALSNGEASDIVIEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAEQVKLELEQLREKREEENLVLVKERAAVESEMEVLSRLRREAEEKLEDL 727
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: B9DHR5_ARATH (AT5G23890 protein (Fragment) OS=Arabidopsis thaliana GN=At5g23890 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.215e-54
Identity = 116/155 (74.84%), Postives = 142/155 (91.61%), Query Frame = 2 
Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWP+++ADLSTGE GI ALAFGCTRLFQP+KPVTK QAA+A+++GEASD+VSEELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKELS+EREKI+A EKMAE AK ELE++R +REEEN+ L+K+RAA+ +E ++LSRLRR+ EE+LE +
Sbjct:  443 PDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDL 597
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: B9DFF5_ARATH (AT5G23890 protein (Fragment) OS=Arabidopsis thaliana GN=At5g23890 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.744e-54
Identity = 116/155 (74.84%), Postives = 142/155 (91.61%), Query Frame = 2 
Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWP+++ADLSTGE GI ALAFGCTRLFQP+KPVTK QAA+A+++GEASD+VSEELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKELS+EREKI+A EKMAE AK ELE++R +REEEN+ L+K+RAA+ +E ++LSRLRR+ EE+LE +
Sbjct:  584 PDAWPSIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDL 738
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Match: D7M2E2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489250 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.342e-54
Identity = 117/155 (75.48%), Postives = 142/155 (91.61%), Query Frame = 2 
Query:    2 PDAWPALVADLSTGEPGIIALAFGCTRLFQPNKPVTKAQAAVAIATGEASDLVSEELARIXXXXXXXXXXXXHNALVAEVEKDVNANFEKELSIEREKIDAFEKMXXXXXXXXXXXXXXXXXXNMVLMKDRAAISAETKILSRLRREVEEQLETM 466
            PDAWPA++ADLSTGE GI ALAFGCTRLFQP+KPVTK QAA+A+++GEASD+VSEELARIEAES+AE AVSAHNALVAEVEKDVNA+FEKELS+EREKI+A EKMAE AK ELE++R +REEEN+ L+K+RAA+ +E ++LSRLRR+ EE+LE +
Sbjct:  585 PDAWPAIIADLSTGEQGIAALAFGCTRLFQPHKPVTKGQAAIALSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEVEKDVNASFEKELSMEREKIEAVEKMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSRLRRDAEEKLEDL 739
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078CWI1_BRANA1.829e-5476.13BnaC07g30500D protein OS=Brassica napus GN=BnaC07g... [more]
A0A0D3DD88_BRAOL1.829e-5476.13Uncharacterized protein OS=Brassica oleracea var. ... [more]
B9DHR5_ARATH2.215e-5474.84AT5G23890 protein (Fragment) OS=Arabidopsis thalia... [more]
B9DFF5_ARATH3.744e-5474.84AT5G23890 protein (Fragment) OS=Arabidopsis thalia... [more]
D7M2E2_ARALL4.342e-5475.48Putative uncharacterized protein OS=Arabidopsis ly... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008963 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..116
NoneNo IPR availablePANTHERPTHR33740FAMILY NOT NAMEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR33740:SF3SUBFAMILY NOT NAMEDcoord: 1..145

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008963 ID=g.arboreum_cottongen_reftransV1_0008963; Name=g.arboreum_cottongen_reftransV1_0008963; organism=Gossypium arboreum; type=contig; length=466bp
TCCAGATGCATGGCCTGCACTTGTAGCTGACTTGTCTACTGGAGAACCAG
GAATAATAGCTCTTGCTTTTGGTTGTACAAGATTGTTCCAGCCAAATAAG
CCTGTGACAAAGGCCCAAGCAGCTGTTGCTATTGCAACTGGTGAAGCTTC
TGACCTTGTAAGTGAGGAGCTAGCACGTATTGAAGCTGAATCAGTGGCAG
AAAATGCAGTATCTGCTCACAATGCTTTAGTAGCTGAAGTTGAGAAAGAT
GTTAATGCTAATTTTGAGAAAGAACTTTCGATAGAACGTGAAAAGATTGA
TGCTTTTGAAAAAATGGCTGAAGAGGCAAAGCGCGAGCTGGAAAGGATAA
GAGCTGAAAGAGAGGAAGAGAATATGGTCCTAATGAAGGACCGTGCTGCT
ATTAGTGCTGAAACGAAAATTCTTTCAAGATTAAGGCGTGAAGTGGAGGA
GCAGTTGGAAACCATG
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