g.arboreum_cottongen_reftransV1_0021259, g.arboreum_cottongen_reftransV1_0021259 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4U520_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1) HSP 1 Score: 487.649 bits (1254), Expect = 6.578e-160 Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 YHNAGTVEFIVDT + FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+ V E SAARL A LVAAC+ EKE+S +KES G+ LL IWY PPFRV+HHA+R MEFEWENE++ S SK L L++TY DGNY I ++GE+G +I EVKA+ LG F VE D ++M+V LAVY K Sbjct: 156 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 473 HSP 2 Score: 150.214 bits (378), Expect = 5.209e-35 Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743 F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Sbjct: 490 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 586
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4VVF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1) HSP 1 Score: 488.034 bits (1255), Expect = 2.617e-159 Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 YHNAGTVEFIVDT + FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+ V E SAARL A LVAAC+ EKE+S +KES G+ LL IWY PPFRV+HHA+R MEFEWENE++ S SK L L++TY DGNY I ++GE+G +I EVKA+ LG F VE D ++M+V LAVY K Sbjct: 197 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 514 HSP 2 Score: 152.91 bits (385), Expect = 1.356e-35 Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749 F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Q Sbjct: 531 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQGQ 629
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4U516_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1) HSP 1 Score: 490.345 bits (1261), Expect = 5.998e-159 Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 YHNAGTVEFIVDT + FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+ V E SAARL A LVAAC+ EKE+S +KES G+ LL IWY PPFRV+HHA+R MEFEWENE++ S SK L L++TY DGNY I ++GE+G +I EVKA+ LG F VE D ++M+V LAVY K Sbjct: 306 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 623 HSP 2 Score: 150.984 bits (380), Expect = 1.330e-34 Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743 F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Sbjct: 640 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 736
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TUT5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1) HSP 1 Score: 489.96 bits (1260), Expect = 1.090e-158 Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 YHNAGTVEFIVDT + FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+ V E SAARL A LVAAC+ EKE+S +KES G+ LL IWY PPFRV+HHA+R MEFEWENE++ S SK L L++TY DGNY I ++GE+G +I EVKA+ LG F VE D ++M+V LAVY K Sbjct: 306 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 623 HSP 2 Score: 152.91 bits (385), Expect = 3.216e-35 Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749 F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Q Sbjct: 640 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQGQ 738
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: W9RHZ1_9ROSA (Methylcrotonoyl-CoA carboxylase subunit alpha OS=Morus notabilis GN=L484_002045 PE=4 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 2.187e-158 Identity = 254/354 (71.75%), Postives = 286/354 (80.79%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064 AVSAA+AVGYHNAGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQ QVPLSGHAFEARIYAENVPKGFLPATGVLHHY VP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLKDCL KFQVAGLPTN++FLQKLA+H AF++G VETHFIEH DDLF+DP+N V+ ++AY AAR A L AAC+ EKE SA KE+ G L IWY+ PPFRV+H A TME EW+NEY+ S SKPL LSITY DG+Y I+ + EN LEV+A+ LGN++F VE DG+ MNV LAVY+K + I++ + H + L Sbjct: 294 AVSAARAVGYHNAGTVEFIVDTTSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQSQVPLSGHAFEARIYAENVPKGFLPATGVLHHYRHVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKDCLSKFQVAGLPTNVSFLQKLASHWAFQDGKVETHFIEHFKDDLFIDPDNLVLEKEAYDAARFSAALAAACVIEKEHSARKENIPGGNGLFSIWYSSPPFRVHHCASSTMELEWDNEYDISGSKPLTLSITYKQDGSYCIESK---ENSYPALEVRATKLGNNDFRVEVDGVIMNVRLAVYSKDQIKHIHIWHGSQHHHFKQRIGL 644 HSP 2 Score: 153.68 bits (387), Expect = 3.881e-35 Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743 F+Q++GL+LSDE+E+QHK SFET+SHP GTVVAPMAGLVVKVLV+DG KVE GQ +LVLEAMKMEHVVKA S G V GL+V GQQVSDG LFRIK Sbjct: 638 FKQRIGLELSDEDESQHKPSFETSSHPKGTVVAPMAGLVVKVLVKDGTKVEGGQPILVLEAMKMEHVVKAPSAGYVHGLQVTTGQQVSDGGALFRIK 734
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2) HSP 1 Score: 473.781 bits (1218), Expect = 1.561e-154 Identity = 232/345 (67.25%), Postives = 274/345 (79.42%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064 Y+NAGTVEFIVDT + FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGE LP+SQ QVPLSGHAFEARIYAENV KGFLPATGVLHHYH VP SS VRVETGV++GD VSMHYDPMIAKLVVWGENRAAALVKLKD L KFQVAGLPTN+NFLQKLANH+AF GNVETHFI+++ +DLFVD NN V ++AY AARL A LVAACL EKE + + G SLLPIWY+ PPFR++H A+R ME EW+NEY S SSK + L+ITY PDG Y I+ +Q NG +LEVK++ + ++ F VE+ G+ +V++AVY+K + I+ C+ + + + L Sbjct: 299 YYNAGTVEFIVDTVSDEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQILVANGEALPLSQSQVPLSGHAFEARIYAENVQKGFLPATGVLHHYH-VPVSSAVRVETGVKEGDKVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNVNFLQKLANHRAFAIGNVETHFIDNYKEDLFVDANNSVSVKEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEWDNEYGSGSSKIMKLTITYQPDGRYLIETEQ---NGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGL 639 HSP 2 Score: 136.346 bits (342), Expect = 6.844e-32 Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749 FR+KLGL+LS++ E+QHK ET+++P GTVVAPMAGLVVKVLVE+ +VE GQ VLVLEAMKMEHVVKA S G V GL++ G+QVSDGSVLF +K Q Sbjct: 633 FREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKDQ 731
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2) HSP 1 Score: 453.751 bits (1166), Expect = 9.596e-147 Identity = 225/332 (67.77%), Postives = 257/332 (77.41%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD-PSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 AVSAA+AVGY+NAGTVEFIVDT++ FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP+SQ +VP+SGHAFEARIYAENVPKGFLPATGVL+HY PV S +VRVETGVEQGD VSMHYDPMIAKLVVWG NR ALVKLKDCL FQVAG+PTNINFLQKLA+HK F GNVETHFIEHH DLF D +N E AY A + A LVAAC+ E S ES+ G PS IWY++PPFRV+H A++T+E EW NE E + S + L + Y PDG+Y I+ N LE++ + G +F VE+ GL+MNVSLA Y K Sbjct: 295 AVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPLSQSEVPMSGHAFEARIYAENVPKGFLPATGVLNHYRPVAVSPSVRVETGVEQGDTVSMHYDPMIAKLVVWGGNRGEALVKLKDCLSNFQVAGVPTNINFLQKLASHKEFAVGNVETHFIEHHKSDLFADESNPAATEVAYKAVKHSAALVAACISTIEHSTWNESNHGKVPS---IWYSNPPFRVHHEAKQTIELEWNNECEGTGSNLISLGVRYQPDGSYLIEEG----NDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAAYLK 619 HSP 2 Score: 142.124 bits (357), Expect = 1.027e-33 Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1 Query: 1453 FRQKLGLDLS-DENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743 F+QK+G++ S DE QH+TS ET+SHPPGT+VAPMAGLVVKVLVE+ AKV+ GQ +LVLEAMKMEHVVKA S G ++ LKV AGQQVSDGS LFRIK Sbjct: 636 FKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIK 733
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2) HSP 1 Score: 424.091 bits (1089), Expect = 2.778e-135 Identity = 208/331 (62.84%), Postives = 253/331 (76.44%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995 AVSAAKAVGY++AGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIR+ANGE LP+SQ+QVPL+GHAFEARIYAENVP+GFLPATG LHHY PVP ++TVRVETGVE+GD VSMHYDPMIAKLVVWGE+R AALVKLK+ L FQ+AGLPTN+ FLQ+LA H AFE+G V+THFIE + +DL + ++ A LGA L AAC+C+K+ + + S L +WYAHPPFR++H A+R MEFE + E SS L LS+TY DG YF++ + G L+VK + G+ +F V+ GL +V+LA Y+K Sbjct: 296 AVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRIANGECLPLSQEQVPLNGHAFEARIYAENVPRGFLPATGTLHHYRPVPSTATVRVETGVEEGDTVSMHYDPMIAKLVVWGESRNAALVKLKNSLSNFQIAGLPTNVGFLQELAGHSAFEKGLVDTHFIERYQNDLLSTSTQAL--SGSHEAEELGAILAAACICKKDHVSSEVSLHDKK--LSMWYAHPPFRMHHFAKRLMEFELDRELGGSSDDLLKLSVTYRSDGTYFVETEDGSSPG---LDVKVDSRGDHDFRVDVGGLQTDVTLAFYSK 619 HSP 2 Score: 119.013 bits (297), Expect = 2.361e-26 Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1 Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743 +RQ L + S ++ +Q S E SHP G+V+APMAGLVVKVL++DGA+VE GQ V+V+EAMKMEHVVKA G VEGLK AGQQV D SVLF +K Sbjct: 636 YRQTLRAEQSPDDSSQPSASSEARSHPKGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVK 732
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_RAT (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Mccc1 PE=1 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 3.907e-75 Identity = 141/289 (48.79%), Postives = 186/289 (64.36%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869 AV AAKAV Y AGTVEFI+D+K +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+ F+P G L H PP + R+ETGV QGD VS+HYDPMIAKLVVW +R +AL KL+ L ++ + GL TN++FL +L+ H FE GNV T FI H+ DL P + I +++ A LG L EKE ++ + H+ D P ++ R+N R M S +++++TY+ DG+Y +Q Sbjct: 302 AVRAAKAVNYVGAGTVEFIMDSKH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPPPDMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYSLHQYNIVGLRTNVDFLLRLSGHSEFEAGNVHTDFIPQHHKDLL--PTHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKNDIIIAVTYNRDGSYDMQ 573
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_MOUSE (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus GN=Mccc1 PE=1 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 1.094e-69 Identity = 131/280 (46.79%), Postives = 179/280 (63.93%), Query Frame = 3 Query: 30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869 Y AGTVEFI+D++ +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+ F+P G L H + R+ETGV QGD VS+HYDPMIAKLVVW +R +AL KL+ CL ++ + GL +N++FL +L+ H FE GNV T FI H+ DL P++ I +++ A LG L EKE ++ + H+ D P ++ R+N R M S +++++TY+ DG+Y +Q Sbjct: 311 YVGAGTVEFIMDSRH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPSADMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYCLHQYNIVGLRSNVDFLLRLSGHPEFEAGNVHTDFIPQHHKDLL--PSHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKSDIVIAVTYNRDGSYDMQ 573
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_HUMAN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3) HSP 1 Score: 238.81 bits (608), Expect = 2.580e-66 Identity = 136/295 (46.10%), Postives = 173/295 (58.64%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPF------RVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869 AV AAKAV Y AGTVEFI+D+K +F FMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++ L GHAFEARIYAE+ F+P G L H + R+ETGV QGD VS+HYDPMIAKLVVW +R AAL KL+ L ++ + GL TNI+FL L+ H FE GNV T FI H+ L + + K +++ A LG L KE D L PF R+N R M + + +++TY+ DG+Y +Q Sbjct: 306 AVRAAKAVNYVGAGTVEFIMDSKH-NFCFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEITLQGHAFEARIYAEDPSNNFMPVAGPLVHLSTPRADPSTRIETGVRQGDEVSVHYDPMIAKLVVWAADRQAALTKLRYSLRQYNIVGLHTNIDFLLNLSGHPEFEAGNVHTDFIPQHHKQLLL--SRKAAAKESLCQAALGLIL-------------KEKAMTDTFTLQAHDQFSPFSSSSGRRLNISYTRNMTLK-------DGKNNVAIAVTYNHDGSYSMQ 577
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_DICDI (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=mccA PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 2.115e-60 Identity = 118/256 (46.09%), Postives = 159/256 (62.11%), Query Frame = 3 Query: 27 GYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWEN 794 GY AGTVEFI+ + F+FMEMNTRLQVEHP+TEMI QDLVEWQ++VA + LP+ Q+Q+ + GH+FEARIYAEN FLP TG L H PS T+RVETGV QGD VS++YDPMIAKLVVW ++R AL L++ L ++ + GL TNI+FL++L+ H +F G VET FI H + L A A L A + ++ DP+ W + FR+NH+ ++ ++F ++ Sbjct: 295 GYVGAGTVEFIL-SADNSFFFMEMNTRLQVEHPITEMITKQDLVEWQLKVAESQTLPMEQEQLKIHGHSFEARIYAENPDSDFLPGTGKLAHLSTPTPSDTLRVETGVRQGDEVSVYYDPMIAKLVVWDQDREKALRYLRNALDEYHIIGLNTNISFLKRLSTHPSFMAGEVETGFIPIHRESLM-----------APQAPMSDDSLALAATSLLLKEITQQKSKEDPN--SPWSSLGGFRINHNLKKQVKFNQKD 536 HSP 2 Score: 56.9954 bits (136), Expect = 5.244e-7 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1 Query: 1537 GTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVL 1731 G++V+PM G + KV+V G V+ GQ +L++EAMKMEH +++ G VE L + V D L Sbjct: 631 GSLVSPMPGKITKVMVNVGDMVKKGQPILLMEAMKMEHTIRSPIDGKVESLPYNVNEIVEDKKTL 695
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC2_BACSU (Biotin carboxylase 2 OS=Bacillus subtilis (strain 168) GN=accC2 PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 1.195e-50 Identity = 97/188 (51.60%), Postives = 126/188 (67.02%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHH 566 AV AAKA+GY NAGT+EFIVD K +FYF+EMNTRLQVEHPVTE I G DLVE Q+R+A G L SQ + +GHA E RIYAE+ PK F P+ G + + +P VR E V + V+ YDPMIAK++V G+ R A+ KL+ L ++V G+ TN+ L + A KAF+EG+V T F++ H Sbjct: 259 AVKAAKAIGYTNAGTIEFIVDQKQ-NFYFLEMNTRLQVEHPVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQRNGHAIEVRIYAED-PKTFFPSPGTITAF-SLPDQKGVRHECAVAKDSTVTPFYDPMIAKMIVKGQTRTEAIEKLETALRDYRVEGIKTNLPLLIQAAATKAFKEGDVTTDFLKQH 443
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: PCCA_CAEEL (Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Caenorhabditis elegans GN=pcca-1 PE=1 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.355e-48 Identity = 90/186 (48.39%), Postives = 130/186 (69.89%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGF-LPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFI 557 AV AKAVGY +AGTVEF+VD++ +FYF+EMNTRLQVEHP+TE I G D+V+ +RV+ G PLPI+Q+QVPL+G AFE+R+YAE+ KGF LP+ G L Y VR ++G+ +G +S++YDP+I KLV G+NR AL ++++ L + + G+ NI L+ + K F G++ T ++ Sbjct: 306 AVQLAKAVGYDSAGTVEFLVDSQR-NFYFLEMNTRLQVEHPITECITGIDIVQQMLRVSYGHPLPITQEQVPLNGWAFESRVYAEDPYKGFGLPSVGRLSRYVEPKHVDGVRCDSGIREGSEISIYYDPLICKLVTHGDNREQALNRMQEALDNYVIRGVTHNIPLLRDIVQEKRFRTGDITTKYL 490
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC_NOSS1 (Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.161e-47 Identity = 90/189 (47.62%), Postives = 124/189 (65.61%), Query Frame = 3 Query: 3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHN 569 AV AA+ + Y AGT+EF++D ++G FYFMEMNTR+QVEHPVTEM+ G DL+ QIR+A GE L ++QDQV L GHA E RI AE+ F PA G + Y P P VR+++ V + +YD +I KL+VWG +RA A+ ++K L + + GLPT I F Q++ + F +GNV T F++ N Sbjct: 260 AVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNTRIQVEHPVTEMVTGVDLLVEQIRIAQGERLRLTQDQVVLRGHAIECRINAEDPDHDFRPAPGRISGYLP-PGGPGVRIDSHVYTDYQIPPYYDSLIGKLIVWGPDRATAINRMKRALRECAITGLPTTIGFHQRIMENPQFLQGNVSTSFVQEMN 446 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021259 ID=g.arboreum_cottongen_reftransV1_0021259; Name=g.arboreum_cottongen_reftransV1_0021259; organism=Gossypium arboreum; type=contig; length=2207bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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