g.arboreum_cottongen_reftransV1_0021259, g.arboreum_cottongen_reftransV1_0021259 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021259
Unique Name	g.arboreum_cottongen_reftransV1_0021259
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	2207

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0021259:1..2207 . Chr3:19929559..19934476 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: A0A067JC78_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21888 PE=4 SV=1)

HSP 1 Score: 520.776 bits (1340), Expect = 9.033e-171
Identity = 249/331 (75.23%), Postives = 280/331 (84.59%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGYHNAGTVEFIVD  +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLP+SQ QVPL GHAFE RIYAENVPKGFLPATGVLHHY P   SSTVRVETGVE+GD VSMHYDPMIAKLVVWGENRAAAL+KLKDCL KFQVAG+PTNI+FLQKLA+H++FEEG VETHFIEHH DDLF DPNN ++ ++AY++AR  A L+AACLCEKE SA+KES  G  SL  IWY+HPPFRV+H A+RTM FEW+NEY+SS  K L + I Y PDGNY I+  +I   G   LEVKA  L +DNF VE+DG++MNV+LA Y+K
Sbjct:  296 AVSAAKAVGYHNAGTVEFIVDKVSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQICVANGEPLPLSQSQVPLLGHAFETRIYAENVPKGFLPATGVLHHYRPAAVSSTVRVETGVEEGDTVSMHYDPMIAKLVVWGENRAAALIKLKDCLSKFQVAGVPTNISFLQKLADHRSFEEGEVETHFIEHHKDDLFTDPNNSLLAKEAYNSARFSAALLAACLCEKEHSALKESPPGGNSLHSIWYSHPPFRVHHLARRTMVFEWDNEYDSSGLKLLTVDIMYQPDGNYLIKIGEISSPG---LEVKAMYLHDDNFRVEADGISMNVNLAAYSK 623

HSP 2 Score: 147.902 bits (372), Expect = 1.170e-33
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            FRQK+GLDLSD++ETQH T FET SHP G+VVAPMAGLVVKV+V+DG+KVE GQ VLVLEAMKMEHVVKA   G V GL+V AGQQVSD ++LF IK
Sbjct:  640 FRQKIGLDLSDDDETQHTTKFETASHPQGSVVAPMAGLVVKVVVKDGSKVEEGQPVLVLEAMKMEHVVKAPLAGYVHGLQVTAGQQVSDSTLLFSIK 736

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: U5GD49_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23500g PE=4 SV=1)

HSP 1 Score: 512.686 bits (1319), Expect = 1.371e-167
Identity = 248/331 (74.92%), Postives = 275/331 (83.08%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGYHNAGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPI+Q QVPL GHAFEARIYAENVPKGFLPATGVLHHY PVP S TVRVETGVEQGD VSMHYDPMIAKLVV GENRAAALVKLKDCL KFQVAG+PTNINFLQKLA+H+AFE GNVETHFIEH+ DDLF DPNN    ++ Y  AR  A LVAACLCEKE SA+K S  G   LLPIWY+HPPFR ++ A  TME EWENEY+ SSS+    SITY  DGNY I+ +++   G   LEVKA+ L + +F VE+DG++M+VSL+ Y+K
Sbjct:  297 AVSAAKAVGYHNAGTVEFIVDTVSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQISVANGEPLPINQSQVPLLGHAFEARIYAENVPKGFLPATGVLHHYRPVPVSPTVRVETGVEQGDTVSMHYDPMIAKLVVSGENRAAALVKLKDCLSKFQVAGVPTNINFLQKLADHRAFENGNVETHFIEHYKDDLFTDPNNLTRAKETYDNARFSATLVAACLCEKEHSAIKSSLPGTNGLLPIWYSHPPFRAHYQASCTMELEWENEYDGSSSEFFTFSITYQSDGNYLIETEEVNSPG---LEVKATLLHDQDFRVETDGVSMDVSLSAYSK 624

HSP 2 Score: 145.976 bits (367), Expect = 4.603e-33
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            FRQKL LDLSD+NE Q KT+FET  HPPGTVVAPMAGLVVKVLV DG KVE GQ +LVLEAMKMEHVVKA   G V GL+V AGQQVSD S LF +K +
Sbjct:  641 FRQKLELDLSDDNEIQQKTNFETALHPPGTVVAPMAGLVVKVLVMDGTKVEEGQPILVLEAMKMEHVVKAPFSGHVHGLQVTAGQQVSDSSPLFSVKGE 739

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TZS3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 491.886 bits (1265), Expect = 6.471e-164
Identity = 242/330 (73.33%), Postives = 271/330 (82.12%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTI 1019
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY KV+ F   I
Sbjct:  101 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNKVNAFFKCI 426

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: B9H8C0_POPTR (Methylcrotonoyl-CoA carboxylase family protein OS=Populus trichocarpa GN=POPTR_0005s23500g PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 7.970e-163
Identity = 248/352 (70.45%), Postives = 276/352 (78.41%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPL---------------------SGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGYHNAGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGEPLPI+Q QVPL                     +GHAFEARIYAENVPKGFLPATGVLHHY PVP S TVRVETGVEQGD VSMHYDPMIAKLVV GENRAAALVKLKDCL KFQVAG+PTNINFLQKLA+H+AFE GNVETHFIEH+ DDLF DPNN    ++ Y  AR  A LVAACLCEKE SA+K S  G   LLPIWY+HPPFR ++ A  TME EWENEY+ SSS+    SITY  DGNY I+ +++   G   LEVKA+ L + +F VE+DG++M+VSL+ Y+K
Sbjct:  297 AVSAAKAVGYHNAGTVEFIVDTVSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQISVANGEPLPINQSQVPLLEFLYSYEFFVGLPDNDHYDLTGHAFEARIYAENVPKGFLPATGVLHHYRPVPVSPTVRVETGVEQGDTVSMHYDPMIAKLVVSGENRAAALVKLKDCLSKFQVAGVPTNINFLQKLADHRAFENGNVETHFIEHYKDDLFTDPNNLTRAKETYDNARFSATLVAACLCEKEHSAIKSSLPGTNGLLPIWYSHPPFRAHYQASCTMELEWENEYDGSSSEFFTFSITYQSDGNYLIETEEVNSPG---LEVKATLLHDQDFRVETDGVSMDVSLSAYSK 645

HSP 2 Score: 146.362 bits (368), Expect = 4.086e-33
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            FRQKL LDLSD+NE Q KT+FET  HPPGTVVAPMAGLVVKVLV DG KVE GQ +LVLEAMKMEHVVKA   G V GL+V AGQQVSD S LF +K +
Sbjct:  662 FRQKLELDLSDDNEIQQKTNFETALHPPGTVVAPMAGLVVKVLVMDGTKVEEGQPILVLEAMKMEHVVKAPFSGHVHGLQVTAGQQVSDSSPLFSVKGE 760

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4VVG1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 9.792e-163
Identity = 242/330 (73.33%), Postives = 271/330 (82.12%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTI 1019
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY KV+ F   I
Sbjct:  156 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNKVNAFFKCI 481

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TAC1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 493.812 bits (1270), Expect = 1.277e-161
Identity = 242/330 (73.33%), Postives = 271/330 (82.12%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTI 1019
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY KV+ F   I
Sbjct:  306 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNKVNAFFKCI 631

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4VVF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 488.804 bits (1257), Expect = 4.721e-161
Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY K
Sbjct:  101 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 418

HSP 2 Score: 150.984 bits (380), Expect = 1.925e-35
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL  DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++
Sbjct:  435 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 531

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TZR9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 489.189 bits (1258), Expect = 5.012e-161
Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY K
Sbjct:  101 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 418

HSP 2 Score: 152.91 bits (385), Expect = 5.225e-36
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL  DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Q
Sbjct:  435 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQGQ 533

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TZR5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 491.115 bits (1263), Expect = 2.171e-160
Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY K
Sbjct:  216 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 533

HSP 2 Score: 150.984 bits (380), Expect = 4.811e-35
Identity = 73/97 (75.26%), Postives = 85/97 (87.63%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL  DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++
Sbjct:  550 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 646

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Match: V4TUU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018988mg PE=4 SV=1)

HSP 1 Score: 488.419 bits (1256), Expect = 5.690e-160
Identity = 239/322 (74.22%), Postives = 267/322 (82.92%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            YHNAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIV QDLVEWQIRVANGEPLP+SQ +VPL GHAFEARIYAENVPKGFLPATGVLHHYHPVP SSTVRVETGVEQGD VSMHYDPMIAKLVVWGENRAAALVKLK+CL  F+VAG+PTNINFLQKLA H+AFE G+VETHFIE H D+LFV P+  V  E   SAARL A LVAAC+ EKE+S +KES  G+  LL IWY  PPFRV+HHA+R MEFEWENE++ S SK L L++TY  DGNY I   ++GE+G +I EVKA+ LG   F VE D ++M+V LAVY K
Sbjct:  156 YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSTVRVETGVEQGDTVSMHYDPMIAKLVVWGENRAAALVKLKNCLSNFEVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAE-MNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLI---EMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNK 473

HSP 2 Score: 152.525 bits (384), Expect = 1.143e-35
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            F+QKLGL+L DE+ETQHKTSFET + PPG+V++PMAGLVVKVL  DG KVE GQ +LVLEAMKMEHVVKA + GVV GL+V AGQQVSDGSVLFR++ Q
Sbjct:  490 FKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQGQ 588

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 473.781 bits (1218), Expect = 1.561e-154
Identity = 232/345 (67.25%), Postives = 274/345 (79.42%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTKVSMFSTTIFNVQCYDHMTDSVNL 1064
            Y+NAGTVEFIVDT +  FYFMEMNTRLQVEHPVTEMIVGQDLVEWQI VANGE LP+SQ QVPLSGHAFEARIYAENV KGFLPATGVLHHYH VP SS VRVETGV++GD VSMHYDPMIAKLVVWGENRAAALVKLKD L KFQVAGLPTN+NFLQKLANH+AF  GNVETHFI+++ +DLFVD NN V  ++AY AARL A LVAACL EKE   +  +  G  SLLPIWY+ PPFR++H A+R ME EW+NEY S SSK + L+ITY PDG Y I+ +Q   NG  +LEVK++ + ++ F VE+ G+  +V++AVY+K  +    I+   C+ +  + + L
Sbjct:  299 YYNAGTVEFIVDTVSDEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQILVANGEALPLSQSQVPLSGHAFEARIYAENVQKGFLPATGVLHHYH-VPVSSAVRVETGVKEGDKVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNVNFLQKLANHRAFAIGNVETHFIDNYKEDLFVDANNSVSVKEAYEAARLNASLVAACLIEKEHFILARNPPGGSSLLPIWYSSPPFRIHHQAKRRMELEWDNEYGSGSSKIMKLTITYQPDGRYLIETEQ---NGSPVLEVKSTYVKDNYFRVEAAGVINDVNVAVYSKDQIRHIHIWQGSCHHYFREKLGL 639

HSP 2 Score: 136.346 bits (342), Expect = 6.844e-32
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIKAQ 1749
            FR+KLGL+LS++ E+QHK   ET+++P GTVVAPMAGLVVKVLVE+  +VE GQ VLVLEAMKMEHVVKA S G V GL++  G+QVSDGSVLF +K Q
Sbjct:  633 FREKLGLELSEDEESQHKPKVETSANPQGTVVAPMAGLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVKDQ 731

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 453.751 bits (1166), Expect = 9.596e-147
Identity = 225/332 (67.77%), Postives = 257/332 (77.41%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGD-PSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAA+AVGY+NAGTVEFIVDT++  FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLP+SQ +VP+SGHAFEARIYAENVPKGFLPATGVL+HY PV  S +VRVETGVEQGD VSMHYDPMIAKLVVWG NR  ALVKLKDCL  FQVAG+PTNINFLQKLA+HK F  GNVETHFIEHH  DLF D +N    E AY A +  A LVAAC+   E S   ES+ G  PS   IWY++PPFRV+H A++T+E EW NE E + S  + L + Y PDG+Y I+      N    LE++ +  G  +F VE+ GL+MNVSLA Y K
Sbjct:  295 AVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPLSQSEVPMSGHAFEARIYAENVPKGFLPATGVLNHYRPVAVSPSVRVETGVEQGDTVSMHYDPMIAKLVVWGGNRGEALVKLKDCLSNFQVAGVPTNINFLQKLASHKEFAVGNVETHFIEHHKSDLFADESNPAATEVAYKAVKHSAALVAACISTIEHSTWNESNHGKVPS---IWYSNPPFRVHHEAKQTIELEWNNECEGTGSNLISLGVRYQPDGSYLIEEG----NDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAAYLK 619

HSP 2 Score: 142.124 bits (357), Expect = 1.027e-33
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1

Query: 1453 FRQKLGLDLS-DENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            F+QK+G++ S DE   QH+TS ET+SHPPGT+VAPMAGLVVKVLVE+ AKV+ GQ +LVLEAMKMEHVVKA S G ++ LKV AGQQVSDGS LFRIK
Sbjct:  636 FKQKVGIEFSEDEEGVQHRTSSETSSHPPGTIVAPMAGLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIK 733

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 2.778e-135
Identity = 208/331 (62.84%), Postives = 253/331 (76.44%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQHQQIGENGVHILEVKASNLGNDNFIVESDGLTMNVSLAVYTK 995
            AVSAAKAVGY++AGTVEFIVDT +G FYFMEMNTRLQVEHPVTEMIVGQDLVEWQIR+ANGE LP+SQ+QVPL+GHAFEARIYAENVP+GFLPATG LHHY PVP ++TVRVETGVE+GD VSMHYDPMIAKLVVWGE+R AALVKLK+ L  FQ+AGLPTN+ FLQ+LA H AFE+G V+THFIE + +DL       +    ++ A  LGA L AAC+C+K+  + + S       L +WYAHPPFR++H A+R MEFE + E   SS   L LS+TY  DG YF++ +     G   L+VK  + G+ +F V+  GL  +V+LA Y+K
Sbjct:  296 AVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRIANGECLPLSQEQVPLNGHAFEARIYAENVPRGFLPATGTLHHYRPVPSTATVRVETGVEEGDTVSMHYDPMIAKLVVWGESRNAALVKLKNSLSNFQIAGLPTNVGFLQELAGHSAFEKGLVDTHFIERYQNDLLSTSTQAL--SGSHEAEELGAILAAACICKKDHVSSEVSLHDKK--LSMWYAHPPFRMHHFAKRLMEFELDRELGGSSDDLLKLSVTYRSDGTYFVETEDGSSPG---LDVKVDSRGDHDFRVDVGGLQTDVTLAFYSK 619

HSP 2 Score: 119.013 bits (297), Expect = 2.361e-26
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1

Query: 1453 FRQKLGLDLSDENETQHKTSFETTSHPPGTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVLFRIK 1743
            +RQ L  + S ++ +Q   S E  SHP G+V+APMAGLVVKVL++DGA+VE GQ V+V+EAMKMEHVVKA   G VEGLK  AGQQV D SVLF +K
Sbjct:  636 YRQTLRAEQSPDDSSQPSASSEARSHPKGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVK 732

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_RAT (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Mccc1 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.907e-75
Identity = 141/289 (48.79%), Postives = 186/289 (64.36%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            AV AAKAV Y  AGTVEFI+D+K  +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+    F+P  G L H    PP  + R+ETGV QGD VS+HYDPMIAKLVVW  +R +AL KL+  L ++ + GL TN++FL +L+ H  FE GNV T FI  H+ DL   P +  I +++   A LG       L EKE ++  + H+ D    P  ++    R+N    R M          S    +++++TY+ DG+Y +Q
Sbjct:  302 AVRAAKAVNYVGAGTVEFIMDSKH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPPPDMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYSLHQYNIVGLRTNVDFLLRLSGHSEFEAGNVHTDFIPQHHKDLL--PTHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKNDIIIAVTYNRDGSYDMQ 573

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_MOUSE (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus GN=Mccc1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.094e-69
Identity = 131/280 (46.79%), Postives = 179/280 (63.93%), Query Frame = 3

Query:   30 YHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            Y  AGTVEFI+D++  +FYFMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++PL GHAFEARIYAE+    F+P  G L H        + R+ETGV QGD VS+HYDPMIAKLVVW  +R +AL KL+ CL ++ + GL +N++FL +L+ H  FE GNV T FI  H+ DL   P++  I +++   A LG       L EKE ++  + H+ D    P  ++    R+N    R M          S    +++++TY+ DG+Y +Q
Sbjct:  311 YVGAGTVEFIMDSRH-NFYFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEIPLQGHAFEARIYAEDPDNNFMPGAGPLVHLSTPSADMSTRIETGVRQGDEVSVHYDPMIAKLVVWASDRQSALSKLRYCLHQYNIVGLRSNVDFLLRLSGHPEFEAGNVHTDFIPQHHKDLL--PSHSTIAKESVCQAALG-----LILKEKEMTSAFKLHTQD-QFSPFSFSSGR-RLNISYTRNMTLR-------SGKSDIVIAVTYNRDGSYDMQ 573

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_HUMAN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.580e-66
Identity = 136/295 (46.10%), Postives = 173/295 (58.64%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPF------RVNHHAQRTMEFEWENEYESSSSKPLMLSITYHPDGNYFIQ 869
            AV AAKAV Y  AGTVEFI+D+K  +F FMEMNTRLQVEHPVTEMI G DLVEWQ+R+A GE +P+SQ+++ L GHAFEARIYAE+    F+P  G L H        + R+ETGV QGD VS+HYDPMIAKLVVW  +R AAL KL+  L ++ + GL TNI+FL  L+ H  FE GNV T FI  H+  L +  + K   +++   A LG  L             KE    D   L       PF      R+N    R M  +            + +++TY+ DG+Y +Q
Sbjct:  306 AVRAAKAVNYVGAGTVEFIMDSKH-NFCFMEMNTRLQVEHPVTEMITGTDLVEWQLRIAAGEKIPLSQEEITLQGHAFEARIYAEDPSNNFMPVAGPLVHLSTPRADPSTRIETGVRQGDEVSVHYDPMIAKLVVWAADRQAALTKLRYSLRQYNIVGLHTNIDFLLNLSGHPEFEAGNVHTDFIPQHHKQLLL--SRKAAAKESLCQAALGLIL-------------KEKAMTDTFTLQAHDQFSPFSSSSGRRLNISYTRNMTLK-------DGKNNVAIAVTYNHDGSYSMQ 577

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: MCCA_DICDI (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=mccA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.115e-60
Identity = 118/256 (46.09%), Postives = 159/256 (62.11%), Query Frame = 3

Query:   27 GYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHNDDLFVDPNNKVIYEDAYSAARLGAKLVAACLCEKERSAMKESHSGDPSLLPIWYAHPPFRVNHHAQRTMEFEWEN 794
            GY  AGTVEFI+ +    F+FMEMNTRLQVEHP+TEMI  QDLVEWQ++VA  + LP+ Q+Q+ + GH+FEARIYAEN    FLP TG L H     PS T+RVETGV QGD VS++YDPMIAKLVVW ++R  AL  L++ L ++ + GL TNI+FL++L+ H +F  G VET FI  H + L            A  A      L  A      +   ++    DP+    W +   FR+NH+ ++ ++F  ++
Sbjct:  295 GYVGAGTVEFIL-SADNSFFFMEMNTRLQVEHPITEMITKQDLVEWQLKVAESQTLPMEQEQLKIHGHSFEARIYAENPDSDFLPGTGKLAHLSTPTPSDTLRVETGVRQGDEVSVYYDPMIAKLVVWDQDREKALRYLRNALDEYHIIGLNTNISFLKRLSTHPSFMAGEVETGFIPIHRESLM-----------APQAPMSDDSLALAATSLLLKEITQQKSKEDPN--SPWSSLGGFRINHNLKKQVKFNQKD 536

HSP 2 Score: 56.9954 bits (136), Expect = 5.244e-7
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1

Query: 1537 GTVVAPMAGLVVKVLVEDGAKVEAGQAVLVLEAMKMEHVVKATSGGVVEGLKVGAGQQVSDGSVL 1731
            G++V+PM G + KV+V  G  V+ GQ +L++EAMKMEH +++   G VE L     + V D   L
Sbjct:  631 GSLVSPMPGKITKVMVNVGDMVKKGQPILLMEAMKMEHTIRSPIDGKVESLPYNVNEIVEDKKTL 695

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC2_BACSU (Biotin carboxylase 2 OS=Bacillus subtilis (strain 168) GN=accC2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.195e-50
Identity = 97/188 (51.60%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHH 566
            AV AAKA+GY NAGT+EFIVD K  +FYF+EMNTRLQVEHPVTE I G DLVE Q+R+A G  L  SQ  +  +GHA E RIYAE+ PK F P+ G +  +  +P    VR E  V +   V+  YDPMIAK++V G+ R  A+ KL+  L  ++V G+ TN+  L + A  KAF+EG+V T F++ H
Sbjct:  259 AVKAAKAIGYTNAGTIEFIVDQKQ-NFYFLEMNTRLQVEHPVTEEITGLDLVEQQLRIAAGHTLTFSQKDIQRNGHAIEVRIYAED-PKTFFPSPGTITAF-SLPDQKGVRHECAVAKDSTVTPFYDPMIAKMIVKGQTRTEAIEKLETALRDYRVEGIKTNLPLLIQAAATKAFKEGDVTTDFLKQH 443

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: PCCA_CAEEL (Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Caenorhabditis elegans GN=pcca-1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.355e-48
Identity = 90/186 (48.39%), Postives = 130/186 (69.89%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGF-LPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFI 557
            AV  AKAVGY +AGTVEF+VD++  +FYF+EMNTRLQVEHP+TE I G D+V+  +RV+ G PLPI+Q+QVPL+G AFE+R+YAE+  KGF LP+ G L  Y        VR ++G+ +G  +S++YDP+I KLV  G+NR  AL ++++ L  + + G+  NI  L+ +   K F  G++ T ++
Sbjct:  306 AVQLAKAVGYDSAGTVEFLVDSQR-NFYFLEMNTRLQVEHPITECITGIDIVQQMLRVSYGHPLPITQEQVPLNGWAFESRVYAEDPYKGFGLPSVGRLSRYVEPKHVDGVRCDSGIREGSEISIYYDPLICKLVTHGDNREQALNRMQEALDNYVIRGVTHNIPLLRDIVQEKRFRTGDITTKYL 490

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Match: ACCC_NOSS1 (Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.161e-47
Identity = 90/189 (47.62%), Postives = 124/189 (65.61%), Query Frame = 3

Query:    3 AVSAAKAVGYHNAGTVEFIVDTKTGHFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPISQDQVPLSGHAFEARIYAENVPKGFLPATGVLHHYHPVPPSSTVRVETGVEQGDVVSMHYDPMIAKLVVWGENRAAALVKLKDCLLKFQVAGLPTNINFLQKLANHKAFEEGNVETHFIEHHN 569
            AV AA+ + Y  AGT+EF++D ++G FYFMEMNTR+QVEHPVTEM+ G DL+  QIR+A GE L ++QDQV L GHA E RI AE+    F PA G +  Y P P    VR+++ V     +  +YD +I KL+VWG +RA A+ ++K  L +  + GLPT I F Q++  +  F +GNV T F++  N
Sbjct:  260 AVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNTRIQVEHPVTEMVTGVDLLVEQIRIAQGERLRLTQDQVVLRGHAIECRINAEDPDHDFRPAPGRISGYLP-PGGPGVRIDSHVYTDYQIPPYYDSLIGKLIVWGPDRATAINRMKRALRECAITGLPTTIGFHQRIMENPQFLQGNVSTSFVQEMN 446

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067JC78_JATCU	9.033e-171	75.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
U5GD49_POPTR	1.371e-167	74.92	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V4TZS3_9ROSI	6.471e-164	73.33	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9H8C0_POPTR	7.970e-163	70.45	Methylcrotonoyl-CoA carboxylase family protein OS=...	[more]
V4VVG1_9ROSI	9.792e-163	73.33	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4TAC1_9ROSI	1.277e-161	73.33	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4VVF7_9ROSI	4.721e-161	74.22	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4TZR9_9ROSI	5.012e-161	74.22	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4TZR5_9ROSI	2.171e-160	74.22	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4TUU0_9ROSI	5.690e-160	74.22	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0021259 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
MCCA_SOYBN	1.561e-154	67.25	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_ARATH	9.596e-147	67.77	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_ORYSJ	2.778e-135	62.84	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_RAT	3.907e-75	48.79	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_MOUSE	1.094e-69	46.79	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_HUMAN	2.580e-66	46.10	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
MCCA_DICDI	2.115e-60	46.09	Methylcrotonoyl-CoA carboxylase subunit alpha, mit...	[more]
ACCC2_BACSU	1.195e-50	51.60	Biotin carboxylase 2 OS=Bacillus subtilis (strain ...	[more]
PCCA_CAEEL	2.355e-48	48.39	Propionyl-CoA carboxylase alpha chain, mitochondri...	[more]
ACCC_NOSS1	1.161e-47	47.62	Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005482	Biotin carboxylase, C-terminal	SMART	SM00878	Biotin_carb_C_2	coord: 50..157 e-value: 7.1E-52 score: 188.3
IPR005482	Biotin carboxylase, C-terminal	PFAM	PF02785	Biotin_carb_C	coord: 50..157 e-value: 1.3E-35 score: 121.6
IPR013816	ATP-grasp fold, subdomain 2	GENE3D	3.30.470.20		coord: 1..162 e-value: 1.3E-60 score: 204.1
IPR005479	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	PFAM	PF02786	CPSase_L_D2	coord: 1..36 e-value: 2.8E-11 score: 43.2
None	No IPR available	PANTHER	PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	coord: 1..298
None	No IPR available	SUPERFAMILY	56059	Glutathione synthetase ATP-binding domain-like	coord: 1..60
IPR011764	Biotin carboxylation domain	PROSITE	PS50979	BC	coord: 1..161 score: 27.551
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 45..163

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021259 ID=g.arboreum_cottongen_reftransV1_0021259; Name=g.arboreum_cottongen_reftransV1_0021259; organism=Gossypium arboreum; type=contig; length=2207bp
CTGCCGTATCTGCTGCTAAGGCAGTTGGTTATCACAATGCTGGCACTGTG
GAGTTTATAGTTGATACCAAAACAGGTCATTTTTACTTCATGGAGATGAA
CACTCGACTTCAGGTTGAGCATCCTGTGACTGAGATGATTGTTGGTCAAG
ATCTCGTGGAGTGGCAAATTCGTGTTGCAAATGGGGAGCCTCTTCCTATA
AGTCAGGATCAGGTGCCCTTATCAGGTCATGCTTTTGAAGCCCGAATCTA
TGCTGAAAATGTTCCCAAAGGATTTCTTCCTGCAACTGGAGTTCTTCATC
ATTATCATCCAGTACCACCCTCTTCAACAGTTCGGGTTGAGACTGGAGTT
GAACAAGGAGATGTTGTTAGCATGCATTATGATCCTATGATTGCAAAGCT
TGTAGTATGGGGAGAAAACCGTGCTGCAGCACTAGTCAAATTGAAGGATT
GCTTGTTAAAGTTTCAGGTTGCAGGGTTGCCAACTAATATCAATTTCCTA
CAAAAGCTTGCTAACCATAAGGCATTTGAAGAGGGCAATGTTGAAACGCA
TTTTATTGAGCACCATAACGATGACCTATTTGTTGATCCTAATAATAAAG
TAATTTATGAGGATGCATATAGTGCAGCTAGACTTGGAGCAAAGCTGGTA
GCTGCTTGCCTTTGTGAAAAGGAACGTTCTGCTATGAAAGAAAGCCATTC
TGGGGATCCTAGCTTACTTCCTATATGGTATGCTCATCCTCCATTCAGAG
TCAATCATCATGCACAGAGGACCATGGAATTTGAGTGGGAAAATGAATAT
GAGAGCAGTAGTTCAAAGCCTTTGATGCTTTCTATCACTTATCATCCTGA
TGGGAACTATTTTATTCAGCATCAACAGATTGGAGAAAATGGTGTCCACA
TATTGGAAGTCAAAGCATCAAATCTGGGCAATGATAATTTTATAGTTGAG
TCTGATGGTTTAACCATGAATGTTAGTTTAGCTGTTTATACCAAGGTGAG
TATGTTTTCTACCACAATCTTTAATGTACAATGTTATGACCATATGACGG
ATTCAGTTAACTTAGGAAAATAACTTCTAAAATTTATCTGGGTGTCATCT
GTAATTATTGGCTATGTTGACTTTTTATTTCTCTTAACGTGTGCCAATGT
TAGACACTTATCCTCTGCCTGAAAGTCAAGTGGCCCACAGTGCATAAAGG
TAAGCCCATTGAAATGTAAGGTAAATGTACCATTTTCCGGCAGACTGTGT
CTGACCTATGTACCCAAATCCAAGCTACACAGCTTGTTAGGTATGACTGG
CATGCTTAGGTATTATCTAATGTAACTAGAGTGAGTGCAGAAAATTACGA
GTTCATTCTTTCTCTGTGATAAAATCATGTGAAATCTTATAATGTGGGTT
ACAGGGTCAGATCAAACACATACATATATGGCATGGGCCGCACCACCATC
ATTTCAGACAGAAACTAGGCCTTGACCTGTCTGATGAAAATGAAACACAG
CATAAGACGAGTTTCGAGACCACAAGCCACCCTCCTGGGACTGTAGTGGC
ACCCATGGCTGGTTTAGTGGTCAAGGTTCTGGTAGAGGATGGGGCGAAGG
TGGAAGCAGGACAAGCTGTATTGGTCCTTGAAGCCATGAAGATGGAGCAT
GTGGTAAAAGCAACATCTGGTGGTGTTGTTGAAGGGCTTAAAGTCGGTGC
TGGTCAGCAGGTTTCAGATGGTAGTGTTCTCTTCAGAATCAAGGCCCAGG
AATGAATGGAAAAATTCATCTTGAATTTTGGCTTTTCGGGACAATATCGT
GCCTAAGCAAATAAATCTCCTCAGCTACTAATGGCAGGGAAAATAAGTCA
TTGTAAGTATCTGCGACTCCTTACAAACATAAAAAAAGAAAAGAAAAGAA
GAAAGCAAATAGAGAAAAGAGAATGTTAGGGAAACATCCCATATCCTCAT
TATACATGCAGAAACCTCTTGCAAGATGTGAAACAACATTTGATCTGGAA
AAATAAATGTATACTCATATCTGCAGAAGTTGCCTCTGCAAATTGGCATT
TTCGCCTTTATATGCTTTTACAATGAATTTTTTCTGCCATTTGGGAATGG
AAATCTTTAGTGCATCACTGTAGGTTTTCCTGTTAATTTGATATTGGGAT
GGATTAATGCTTTAAAAAGAAATAGCTTATGCACATATTTTCATTCTTTT
GTCTAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005482	Biotin_COase_C
IPR013816	ATP_grasp_subdomain_2
IPR005479	CbamoylP_synth_lsu-like_ATP-bd
IPR011764	Biotin_carboxylation_dom
IPR011054	Rudment_hybrid_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004075	biotin carboxylase activity

Search form

g.arboreum_cottongen_reftransV1_0021259, g.arboreum_cottongen_reftransV1_0021259 (contig) Gossypium arboreum

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