g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: C6T059_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11 Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNK+LR+SL RR S+S S + SS PS + + E + + F +FD DGDGKISA ELR+YFGSIG++MSHE Sbjct: 1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: I1MNI9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11 Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNK+LR+SL RR S+S S + SS PS + + E + + F +FD DGDGKISA ELR+YFGSIG++MSHE Sbjct: 1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0B2SHI4_GLYSO (Putative calcium-binding protein CML41 OS=Glycine soja GN=glysoja_035742 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11 Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNK+LR+SL RR S+S S + SS PS + + E + + F +FD DGDGKISA ELR+YFGSIG++MSHE Sbjct: 1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: M4D8S9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra012889 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.359e-11 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 24 MATAK---VSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT + SK+ KWFS K+L+L+L ++ S +SS +S + N ++ DE+++VF +FD + DGKISA ELR YFGS+GEY++HE Sbjct: 1 MATPQDKLSSKSFKWFSTKALKLNLSFHNRRASSPKSNSSSSLNSPRSNTDDNNNTKSHHSH-DELRRVFSHFDVNSDGKISAFELRDYFGSVGEYITHE 99
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: W9R9U4_9ROSA (Putative calcium-binding protein CML41 OS=Morus notabilis GN=L484_009164 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.607e-11 Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 3 Query: 39 VSKA-SKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTK---RPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 VSK SKWF+NK+L+LS RR SKS S+ SS P S +PRT P +EDE++QVF FD + DGKISA ELRAYFGS+GEYMSHE Sbjct: 15 VSKPLSKWFANKTLKLSFHRRRSKSSSSCSSSPSSPISPLRTPRTSPTTTIAIIGTNKEDELRQVFRRFDQNDDGKISAFELRAYFGSVGEYMSHE 110
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT K +S KWFS K+L+L+L + + S SSS S S N+++ + ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE Sbjct: 1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bpback to top |