g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013937
Unique Nameg.arboreum_cottongen_reftransV1_0013937
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0013937:1..316 .
Chr7:10485372..10485687 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: C6T059_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNK+LR+SL RR S+S S +  SS  PS          +  +   E   + + F +FD DGDGKISA ELR+YFGSIG++MSHE
Sbjct:    1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: I1MNI9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNK+LR+SL RR S+S S +  SS  PS          +  +   E   + + F +FD DGDGKISA ELR+YFGSIG++MSHE
Sbjct:    1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0B2SHI4_GLYSO (Putative calcium-binding protein CML41 OS=Glycine soja GN=glysoja_035742 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-11
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNK+LR+SL RR S+S S +  SS  PS          +  +   E   + + F +FD DGDGKISA ELR+YFGSIG++MSHE
Sbjct:    1 MASERILKPSKWFSNKTLRISLHRRRSRSSSNNSLSSNSPSPR--------SPMSNNGEITGLMEAFRHFDNDGDGKISAYELRSYFGSIGDHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: M4D8S9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra012889 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.359e-11
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:   24 MATAK---VSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT +    SK+ KWFS K+L+L+L     ++ S   +SS   +S   +     N ++     DE+++VF +FD + DGKISA ELR YFGS+GEY++HE
Sbjct:    1 MATPQDKLSSKSFKWFSTKALKLNLSFHNRRASSPKSNSSSSLNSPRSNTDDNNNTKSHHSH-DELRRVFSHFDVNSDGKISAFELRDYFGSVGEYITHE 99
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: W9R9U4_9ROSA (Putative calcium-binding protein CML41 OS=Morus notabilis GN=L484_009164 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.607e-11
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 3 
Query:   39 VSKA-SKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTK---RPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            VSK  SKWF+NK+L+LS  RR SKS S+  SS   P S   +PRT P          +EDE++QVF  FD + DGKISA ELRAYFGS+GEYMSHE
Sbjct:   15 VSKPLSKWFANKTLKLSFHRRRSKSSSSCSSSPSSPISPLRTPRTSPTTTIAIIGTNKEDELRQVFRRFDQNDDGKISAFELRAYFGSVGEYMSHE 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:   24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT K   +S   KWFS K+L+L+L  +  +    S SSS   S    S     N+++ +  ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE
Sbjct:    1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
C6T059_SOYBN1.918e-1149.48Putative uncharacterized protein OS=Glycine max PE... [more]
I1MNI9_SOYBN1.918e-1149.48Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2SHI4_GLYSO1.918e-1149.48Putative calcium-binding protein CML41 OS=Glycine ... [more]
M4D8S9_BRARP2.359e-1142.00Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
W9R9U4_9ROSA2.607e-1157.29Putative calcium-binding protein CML41 OS=Morus no... [more]

Pages

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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML41_ARATH2.298e-1647.00Probable calcium-binding protein CML41 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairGENE3D1.10.238.10coord: 56..97
e-value: 2.4E-9
score: 36.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 55..97
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 62..88
e-value: 2.0E-6
score: 27.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 58..93
score: 12.951
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 59..97
NoneNo IPR availablePANTHERPTHR10891:SF568CALCIUM-BINDING PROTEIN CML41-RELATEDcoord: 59..97
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 71..83

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bp
AGGGTTTCCACGGTCAATATATTATGGCAACTGCTAAAGTTTCCAAGGCT
TCCAAATGGTTCTCTAACAAGAGCCTTAGGTTAAGCCTTCAACGTCGTGG
ATCAAAGTCTAGATCAACATCCTTAAGCTCTTCTCCTGGACCATCATCAA
CACCAATATCTCCTCGCACAATTCCTAATATGAGAACCAAAAGGCCTGAA
GAAGACGAGATGAAGCAAGTCTTTGGCTATTTCGACGGGGATGGTGATGG
CAAAATCTCTGCTCTTGAACTTAGGGCGTACTTTGGGTCCATCGGGGAGT
ACATGTCACATGAAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding