g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A067GVW1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028784mg PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.986e-14 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 +A +K S + +FSNK LSL RR SKS+S+S SS+ + + + K +EDE+KQVF +FDGDGDGKISALELRAYFGSIGEYMS+E Sbjct: 8 VAGSKPSNSKWFFSNKGHGLSLHRRRSKSKSSSSSSTTTTTLSSPNSSLSACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYE 104
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V4UI22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026510mg PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.986e-14 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 +A +K S + +FSNK LSL RR SKS+S+S SS+ + + + K +EDE+KQVF +FDGDGDGKISALELRAYFGSIGEYMS+E Sbjct: 8 VAGSKPSNSKWFFSNKGHGLSLHRRRSKSKSSSSSSTTTTTLSSPNSSLSACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYE 104
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A087GWS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G130200 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.790e-13 Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 3 Query: 24 MATAKVSKAS---KWFSNKSLRLSL--QXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT + +S KWFS K+L+L+L Q R S S SSS S + N ++ ++E+++VF +FDGDGDGKI+A ELR YFGS+GEY+SHE Sbjct: 1 MATHQEKPSSNSFKWFSTKTLKLNLSFQNRRGSSSPKSNSSSSLNSPRSNTEDNSNNTKSHHHSDEELRRVFSHFDGDGDGKITAFELRDYFGSVGEYISHE 102
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: D7LTJ0_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485424 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.864e-13 Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 3 Query: 24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT + +S KWFS K+L+L+L + + S SSS S + N ++ +E+++VF +FD DGDGKISA ELR YFGS+GEY+SHE Sbjct: 1 MATLQEKPSSNSFKWFSTKTLKLNLSFQNRRGSPKSNSSSTLNSPRSNTDDNNNNTKSHHASNEELRRVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 100
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: F6GX01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01100 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.914e-13 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3 Query: 201 EDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 EDE+KQVF +FD DGDGKISALELRAYFGSI EYMSHE Sbjct: 50 EDELKQVFRHFDSDGDGKISALELRAYFGSIQEYMSHE 87
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: I1JCT4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.246e-12 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNKSL+LSL R S+S S + SS PS + + E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE Sbjct: 1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0B2NZA6_GLYSO (Putative calcium-binding protein CML41 OS=Glycine soja GN=glysoja_000236 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.246e-12 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNKSL+LSL R S+S S + SS PS + + E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE Sbjct: 1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: C6SZ35_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.343e-12 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 Query: 24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MA+ ++ K SKWFSNKSL+LSL R S+S S + SS PS + + E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE Sbjct: 1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V4NGY0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010726mg PE=4 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.253e-11 Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3 Query: 42 SKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 SK+ KWFS K+L+L+L + + S S SSS S N ++ + E+++VF +FD DGDGKISA ELR YFGS+GEY+SHE Sbjct: 10 SKSFKWFSTKTLKLNLSFQNRRGSSKSNSSSTLNSPRSNIDVNS-NAKSHHLSDVELRRVFSHFDVDGDGKISAFELRDYFGSVGEYISHE 99
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: R0H649_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10018048mg PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.671e-11 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 3 Query: 42 SKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 S + KWFS K+L+L+L + + S SSS S + T + E+++VF +FD +GDGKISA ELR +FGS+GEY++HE Sbjct: 10 SNSFKWFSTKTLKLNLSFQNRRGSPKSNSSSTLNSPRSNTDDNNNTKSTHHSSDKELRRVFSHFDSNGDGKISAYELRDFFGSVGEYITHE 100
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314 MAT K +S KWFS K+L+L+L + + S SSS S S N+++ + ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE Sbjct: 1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bpback to top |