g.arboreum_cottongen_reftransV1_0013937, g.arboreum_cottongen_reftransV1_0013937 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013937
Unique Nameg.arboreum_cottongen_reftransV1_0013937
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0013937:1..316 .
Chr7:10485372..10485687 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A067GVW1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028784mg PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.986e-14
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            +A +K S +  +FSNK   LSL RR SKS+S+S SS+   + +  +         K  +EDE+KQVF +FDGDGDGKISALELRAYFGSIGEYMS+E
Sbjct:    8 VAGSKPSNSKWFFSNKGHGLSLHRRRSKSKSSSSSSTTTTTLSSPNSSLSACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYE 104
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V4UI22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026510mg PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.986e-14
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            +A +K S +  +FSNK   LSL RR SKS+S+S SS+   + +  +         K  +EDE+KQVF +FDGDGDGKISALELRAYFGSIGEYMS+E
Sbjct:    8 VAGSKPSNSKWFFSNKGHGLSLHRRRSKSKSSSSSSTTTTTLSSPNSSLSACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYE 104
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A087GWS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G130200 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.790e-13
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 3 
Query:   24 MATAKVSKAS---KWFSNKSLRLSL--QXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT +   +S   KWFS K+L+L+L  Q R   S   S SSS   S    +     N ++    ++E+++VF +FDGDGDGKI+A ELR YFGS+GEY+SHE
Sbjct:    1 MATHQEKPSSNSFKWFSTKTLKLNLSFQNRRGSSSPKSNSSSSLNSPRSNTEDNSNNTKSHHHSDEELRRVFSHFDGDGDGKITAFELRDYFGSVGEYISHE 102
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: D7LTJ0_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485424 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.864e-13
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 3 
Query:   24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT +   +S   KWFS K+L+L+L  +  +    S SSS   S    +     N ++     +E+++VF +FD DGDGKISA ELR YFGS+GEY+SHE
Sbjct:    1 MATLQEKPSSNSFKWFSTKTLKLNLSFQNRRGSPKSNSSSTLNSPRSNTDDNNNNTKSHHASNEELRRVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: F6GX01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01100 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.914e-13
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  201 EDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            EDE+KQVF +FD DGDGKISALELRAYFGSI EYMSHE
Sbjct:   50 EDELKQVFRHFDSDGDGKISALELRAYFGSIQEYMSHE 87
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: I1JCT4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.246e-12
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNKSL+LSL R  S+S S +  SS  PS          +  +   E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE
Sbjct:    1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: A0A0B2NZA6_GLYSO (Putative calcium-binding protein CML41 OS=Glycine soja GN=glysoja_000236 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.246e-12
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNKSL+LSL R  S+S S +  SS  PS          +  +   E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE
Sbjct:    1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: C6SZ35_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.343e-12
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:   24 MATAKVSKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MA+ ++ K SKWFSNKSL+LSL R  S+S S +  SS  PS          +  +   E + + + F +FD DGDGKISA ELR+YFGSIGE+MSHE
Sbjct:    1 MASERILKPSKWFSNKSLKLSLHRGRSRSSSNNSLSSNSPSPR--------SPMSNNREINGLMEAFRHFDNDGDGKISAYELRSYFGSIGEHMSHE 89
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: V4NGY0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010726mg PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.253e-11
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3 
Query:   42 SKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            SK+ KWFS K+L+L+L  +  +  S S SSS   S          N ++    + E+++VF +FD DGDGKISA ELR YFGS+GEY+SHE
Sbjct:   10 SKSFKWFSTKTLKLNLSFQNRRGSSKSNSSSTLNSPRSNIDVNS-NAKSHHLSDVELRRVFSHFDVDGDGKISAFELRDYFGSVGEYISHE 99
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Match: R0H649_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10018048mg PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.671e-11
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 3 
Query:   42 SKASKWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            S + KWFS K+L+L+L  +  +    S SSS   S    +        T    + E+++VF +FD +GDGKISA ELR +FGS+GEY++HE
Sbjct:   10 SNSFKWFSTKTLKLNLSFQNRRGSPKSNSSSTLNSPRSNTDDNNNTKSTHHSSDKELRRVFSHFDSNGDGKISAYELRDFFGSVGEYITHE 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.298e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:   24 MATAKVSKAS---KWFSNKSLRLSLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMRTKRPEEDEMKQVFGYFDGDGDGKISALELRAYFGSIGEYMSHE 314
            MAT K   +S   KWFS K+L+L+L  +  +    S SSS   S    S     N+++ +  ++E++QVF +FD DGDGKISA ELR YFGS+GEY+SHE
Sbjct:    1 MATQKEKPSSNSFKWFSTKTLKLNLSFQNRRRSPKSNSSSTLNSPRSNSDDNN-NIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHE 99
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067GVW1_CITSI5.986e-1455.67Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4UI22_9ROSI5.986e-1455.67Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A087GWS3_ARAAL3.790e-1346.08Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
D7LTJ0_ARALL4.864e-1344.00Putative uncharacterized protein (Fragment) OS=Ara... [more]
F6GX01_VITVI4.914e-1386.84Putative uncharacterized protein OS=Vitis vinifera... [more]
I1JCT4_SOYBN3.246e-1250.52Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2NZA6_GLYSO3.246e-1250.52Putative calcium-binding protein CML41 OS=Glycine ... [more]
C6SZ35_SOYBN3.343e-1250.52Putative uncharacterized protein OS=Glycine max PE... [more]
V4NGY0_EUTSA1.253e-1147.25Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
R0H649_9BRAS1.671e-1141.76Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML41_ARATH2.298e-1647.00Probable calcium-binding protein CML41 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairGENE3D1.10.238.10coord: 56..97
e-value: 2.4E-9
score: 36.1
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 55..97
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 62..88
e-value: 2.0E-6
score: 27.2
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 58..93
score: 12.951
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 59..97
NoneNo IPR availablePANTHERPTHR10891:SF568CALCIUM-BINDING PROTEIN CML41-RELATEDcoord: 59..97
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 71..83

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013937 ID=g.arboreum_cottongen_reftransV1_0013937; Name=g.arboreum_cottongen_reftransV1_0013937; organism=Gossypium arboreum; type=contig; length=316bp
AGGGTTTCCACGGTCAATATATTATGGCAACTGCTAAAGTTTCCAAGGCT
TCCAAATGGTTCTCTAACAAGAGCCTTAGGTTAAGCCTTCAACGTCGTGG
ATCAAAGTCTAGATCAACATCCTTAAGCTCTTCTCCTGGACCATCATCAA
CACCAATATCTCCTCGCACAATTCCTAATATGAGAACCAAAAGGCCTGAA
GAAGACGAGATGAAGCAAGTCTTTGGCTATTTCGACGGGGATGGTGATGG
CAAAATCTCTGCTCTTGAACTTAGGGCGTACTTTGGGTCCATCGGGGAGT
ACATGTCACATGAAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding