g.arboreum_cottongen_reftransV1_0020780, g.arboreum_cottongen_reftransV1_0020780 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020780
Unique Nameg.arboreum_cottongen_reftransV1_0020780
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length557
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0020780:1..557 .
Chr2:48337727..48338283 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: V7CHF0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G016900g PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.419e-37
Identity = 106/164 (64.63%), Postives = 124/164 (75.61%), Query Frame = 3
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEG-KGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVPVETGGPAPVTRQFFPL-DQD-PEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ +D ESEGCSS ++ ++G KGKRVGSVSNSSSSAVV+EDGSEEED+    +   ++ S+ IFGFSV        PVTRQFFP+ D D P+  A  +G +  FP AHWVGVKF QSE L   KSV+ + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQRKDYESEGCSSSLNDDKGDKGKRVGSVSNSSSSAVVLEDGSEEEDSDRGGSRTLEKKSSKIFGFSVTHGDSDHPPVTRQFFPVEDSDLPDSEAAAAGGSSSFPRAHWVGVKFCQSEALGAGKSVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTG 164          
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0B0MUH4_GOSAR (Floral homeotic APETALA 2-like protein OS=Gossypium arboreum GN=F383_28343 PE=4 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.241e-34
Identity = 109/173 (63.01%), Postives = 125/173 (72.25%), Query Frame = 3
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA------AALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAV-AKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+        ALKK+ S  IFGFSVP      +E+  P PVTRQ FPLD+D EMR   +GT  GFP AHWVG+KFRQSEP     KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMESSDPTPVTRQLFPLDEDQEMR---TGTGPGFPRAHWVGIKFRQSEPYVCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 169          
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A068U1U5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039916001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.725e-32
Identity = 105/183 (57.38%), Postives = 122/183 (66.67%), Query Frame = 3
Query:   87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAAL----KKRNSNM--IFGFSVPVETGGPA-------PVTRQFFPLDQ-DPEMRAVPSGTAQG---------FPMAHWVGVKFRQSEPLA---VAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD++ D+ESEGCSSPVDGE+ KGKRVGSVSNSSSSAVVIEDG  +E+   L    +KR ++   IFGF+V               PVTRQFFP+D+ D  +     G  +G          P A WVGVKF QSEPL    + KS E + P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQTWDDESEGCSSPVDGEDDKGKRVGSVSNSSSSAVVIEDGYSDEEVGELRGGSRKRGTSTSRIFGFAVSAHNDDNCSSESDQPPVTRQFFPVDESDMGVGTSSGGCNEGASSGSGVPDLPRAPWVGVKFCQSEPLGGGVLGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 183          
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A072UEK0_MEDTR (AP2 domain transcription factor OS=Medicago truncatula GN=MTR_5g016810 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.954e-32
Identity = 104/166 (62.65%), Postives = 119/166 (71.69%), Query Frame = 3
Query:   87 MWDLNDSPDRSRDEESEGCS---SPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAV------PSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ ++ ESEGCS     VD +E KGK VGSVSNSSSSA+VIEDGSEEED    KK++S  IFGFS+   +  P PVTRQFFP++    +  V        G +  FP AHWVGVKF QSE +   K VEA+ PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQRKNYESEGCSMEGDEVDVDE-KGKGVGSVSNSSSSAIVIEDGSEEEDGNMTKKKSSK-IFGFSMDDSSDCP-PVTRQFFPVEDSETITTVVDSSSGGGGGSSSFPRAHWVGVKFCQSESVNGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTG 163          
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: R4TV42_POPTO (AP2-2 OS=Populus tomentosa PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.264e-32
Identity = 111/183 (60.66%), Postives = 124/183 (67.76%), Query Frame = 3
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAA------LKKRNSNM-------IFGFSVP-----VETGGPAPVTRQFFPLD----QDPEMRAVPSGTAQGFPMAHWVGVKFRQSE-PLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MW+LNDSPD++RD+ESEGCSS     DGE  KGKRVGSVSNSSSSAVVIEDGSEEED         +KK + +        IFGFSVP     ++T  P PVTRQFFPL+              G   GFP AHWVGVKF QSE  LA  KS+E + P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWNLNDSPDQTRDDESEGCSSQKTSKDGEVDKGKRVGSVSNSSSSAVVIEDGSEEEDDCGEKGDRIIKKHSLSFSSSTSSKIFGFSVPYDQDSMDTSDP-PVTRQFFPLEGQEMGSTSSVGGGDGGGVGFPRAHWVGVKFCQSESSLASQKSMEVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 182          
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.505e-17
Identity = 86/170 (50.59%), Postives = 103/170 (60.59%), Query Frame = 3
Query:   87 MWDLNDSPDRS-RDEESE--GCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATN----------PMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND+P ++ R+EESE    SSP        KRVGS SNSSSSAVVIEDGS++++   ++  N         P+       VT QFFP     EM +   G A GFP AHW GVKF QS+    + + +ATN          P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDAPHQTQREEESEEFCYSSP-------SKRVGSFSNSSSSAVVIEDGSDDDELNRVRPNN---------PL-------VTHQFFP-----EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTG 142          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7CHF0_PHAVU1.419e-3764.63Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0B0MUH4_GOSAR1.241e-3463.01Floral homeotic APETALA 2-like protein OS=Gossypiu... [more]
A0A068U1U5_COFCA2.725e-3257.38Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A072UEK0_MEDTR3.954e-3262.65AP2 domain transcription factor OS=Medicago trunca... [more]
R4TV42_POPTO4.264e-3260.66AP2-2 OS=Populus tomentosa PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AP2_ARATH1.505e-1750.59Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031112AP2-like ethylene-responsive transcription factorPANTHERPTHR32467FAMILY NOT NAMEDcoord: 1..157
NoneNo IPR availablePANTHERPTHR32467:SF18FLORAL HOMEOTIC PROTEIN APETALA 2coord: 1..157

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020780 ID=g.arboreum_cottongen_reftransV1_0020780; Name=g.arboreum_cottongen_reftransV1_0020780; organism=Gossypium arboreum; type=contig; length=557bp
GTTTTTTTGAGAATTTTCTGCTTTGAAAATATATAGTATCTTCGTGATTT
TTAATAGCTGAAAAAGTTTGTGAAGTGAAAAAAAAAATGTGGGATCTTAA
CGATTCTCCTGATCGTTCAAGAGACGAGGAATCGGAAGGGTGTTCATCGC
CGGTAGACGGCGAAGAAGGGAAGGGTAAACGGGTTGGATCCGTTTCGAAT
TCGAGTTCTTCCGCCGTGGTGATCGAGGATGGATCAGAGGAAGAAGATGC
AGCAGCTTTAAAGAAACGAAACAGTAACATGATTTTTGGGTTCTCGGTGC
CTGTCGAGACCGGTGGACCAGCTCCGGTGACTCGTCAGTTTTTTCCACTT
GACCAAGACCCAGAAATGAGGGCAGTTCCCAGCGGAACTGCACAAGGGTT
CCCCATGGCTCACTGGGTCGGAGTCAAATTCCGGCAATCGGAACCACTCG
CCGTTGCTAAATCCGTTGAAGCTACGAATCCCATGAAAAAAAGTAGAAGA
GGACCAAGGTCAAGAAGCTCTCAATATAGAGGTGTTACTTTCTATAGAAG
AACCGGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031112AP2-like_transcript_factor
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0007275multicellular organism development
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity