g.arboreum_cottongen_reftransV1_0020780, g.arboreum_cottongen_reftransV1_0020780 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: V7CHF0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G016900g PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.419e-37 Identity = 106/164 (64.63%), Postives = 124/164 (75.61%), Query Frame = 3 Query: 87 MWDLNDSPDRSRDEESEGCSSPVDGEEG-KGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVPVETGGPAPVTRQFFPL-DQD-PEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557 MWDLNDSPD+ +D ESEGCSS ++ ++G KGKRVGSVSNSSSSAVV+EDGSEEED+ + ++ S+ IFGFSV PVTRQFFP+ D D P+ A +G + FP AHWVGVKF QSE L KSV+ + PMKKSRRGPRSRSSQYRGVTFYRRTG Sbjct: 1 MWDLNDSPDQRKDYESEGCSSSLNDDKGDKGKRVGSVSNSSSSAVVLEDGSEEEDSDRGGSRTLEKKSSKIFGFSVTHGDSDHPPVTRQFFPVEDSDLPDSEAAAAGGSSSFPRAHWVGVKFCQSEALGAGKSVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTG 164
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0B0MUH4_GOSAR (Floral homeotic APETALA 2-like protein OS=Gossypium arboreum GN=F383_28343 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.241e-34 Identity = 109/173 (63.01%), Postives = 125/173 (72.25%), Query Frame = 3 Query: 87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA------AALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAV-AKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557 MWDLND P ++RD+E EGCS+ G+ G KR GS+SNS SSAVVIEDGSEEE+ ALKK+ S IFGFSVP +E+ P PVTRQ FPLD+D EMR +GT GFP AHWVG+KFRQSEP KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG Sbjct: 1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMESSDPTPVTRQLFPLDEDQEMR---TGTGPGFPRAHWVGIKFRQSEPYVCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 169
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A068U1U5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039916001 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.725e-32 Identity = 105/183 (57.38%), Postives = 122/183 (66.67%), Query Frame = 3 Query: 87 MWDLNDSPDRSRDEESEGCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAAL----KKRNSNM--IFGFSVPVETGGPA-------PVTRQFFPLDQ-DPEMRAVPSGTAQG---------FPMAHWVGVKFRQSEPLA---VAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557 MWDLNDSPD++ D+ESEGCSSPVDGE+ KGKRVGSVSNSSSSAVVIEDG +E+ L +KR ++ IFGF+V PVTRQFFP+D+ D + G +G P A WVGVKF QSEPL + KS E + P+KKSRRGPRSRSSQYRGVTFYRRTG Sbjct: 1 MWDLNDSPDQTWDDESEGCSSPVDGEDDKGKRVGSVSNSSSSAVVIEDGYSDEEVGELRGGSRKRGTSTSRIFGFAVSAHNDDNCSSESDQPPVTRQFFPVDESDMGVGTSSGGCNEGASSGSGVPDLPRAPWVGVKFCQSEPLGGGVLGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 183
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A072UEK0_MEDTR (AP2 domain transcription factor OS=Medicago truncatula GN=MTR_5g016810 PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.954e-32 Identity = 104/166 (62.65%), Postives = 119/166 (71.69%), Query Frame = 3 Query: 87 MWDLNDSPDRSRDEESEGCS---SPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAV------PSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557 MWDLNDSPD+ ++ ESEGCS VD +E KGK VGSVSNSSSSA+VIEDGSEEED KK++S IFGFS+ + P PVTRQFFP++ + V G + FP AHWVGVKF QSE + K VEA+ PMKKSRRGPRSRSSQYRGVTFYRRTG Sbjct: 1 MWDLNDSPDQRKNYESEGCSMEGDEVDVDE-KGKGVGSVSNSSSSAIVIEDGSEEEDGNMTKKKSSK-IFGFSMDDSSDCP-PVTRQFFPVEDSETITTVVDSSSGGGGGSSSFPRAHWVGVKFCQSESVNGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTG 163
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: R4TV42_POPTO (AP2-2 OS=Populus tomentosa PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.264e-32 Identity = 111/183 (60.66%), Postives = 124/183 (67.76%), Query Frame = 3 Query: 87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAA------LKKRNSNM-------IFGFSVP-----VETGGPAPVTRQFFPLD----QDPEMRAVPSGTAQGFPMAHWVGVKFRQSE-PLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557 MW+LNDSPD++RD+ESEGCSS DGE KGKRVGSVSNSSSSAVVIEDGSEEED +KK + + IFGFSVP ++T P PVTRQFFPL+ G GFP AHWVGVKF QSE LA KS+E + P+KKSRRGPRSRSSQYRGVTFYRRTG Sbjct: 1 MWNLNDSPDQTRDDESEGCSSQKTSKDGEVDKGKRVGSVSNSSSSAVVIEDGSEEEDDCGEKGDRIIKKHSLSFSSSTSSKIFGFSVPYDQDSMDTSDP-PVTRQFFPLEGQEMGSTSSVGGGDGGGVGFPRAHWVGVKFCQSESSLASQKSMEVSQPLKKSRRGPRSRSSQYRGVTFYRRTG 182
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.505e-17 Identity = 86/170 (50.59%), Postives = 103/170 (60.59%), Query Frame = 3 Query: 87 MWDLNDSPDRS-RDEESE--GCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATN----------PMKKXXXXXXXXXXQYRGVTFYRRTG 557 MWDLND+P ++ R+EESE SSP KRVGS SNSSSSAVVIEDGS++++ ++ N P+ VT QFFP EM + G A GFP AHW GVKF QS+ + + +ATN P+KKSRRGPRSRSSQYRGVTFYRRTG Sbjct: 1 MWDLNDAPHQTQREEESEEFCYSSP-------SKRVGSFSNSSSSAVVIEDGSDDDELNRVRPNN---------PL-------VTHQFFP-----EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTG 142 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020780 ID=g.arboreum_cottongen_reftransV1_0020780; Name=g.arboreum_cottongen_reftransV1_0020780; organism=Gossypium arboreum; type=contig; length=557bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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