g.arboreum_cottongen_reftransV1_0020780, g.arboreum_cottongen_reftransV1_0020780 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020780
Unique Nameg.arboreum_cottongen_reftransV1_0020780
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0020780:1..557 .
Chr2:48337727..48338283 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0B0PRK2_GOSAR (Floral homeotic protein APETALA 2 OS=Gossypium arboreum GN=F383_05795 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.753e-43
Identity = 125/170 (73.53%), Postives = 134/170 (78.82%), Query Frame = 3 
Query:   87 MWDLNDSP-DRSRDEESEGCSS---PVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDA----AALKKRNSNMIFGFSVP-----VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSP  + RD+ESEGCSS    VDG+E KGKRVGSVSNSSSSAVV+EDGSEEE+     AALKKR++ MIFGF VP      E   PAPVTRQFFPLDQDPEM A   G+  GFP AHWVGVKF QSEPL  AKSVE + PMKKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPYQQPRDDESEGCSSQKTSVDGDEDKGKRVGSVSNSSSSAVVVEDGSEEEEGERVKAALKKRSNKMIFGFPVPGEEVFTENSVPAPVTRQFFPLDQDPEMGANCVGSGPGFPRAHWVGVKFCQSEPLPHAKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTG 170
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A5BFY6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042267 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.129e-40
Identity = 108/167 (64.67%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKR--XXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPL-----AVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    VD  + KGKR    S  NSSSSAVVIEDGS+EED    +++ S+ IFGFSV  E  G  PVTRQFFP+ ++ EM     G A  FP AHWVGVKF QSEPL     A AKS+EA+ P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPM-EESEMGTTSCGGAAAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTG 166
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: C1KBJ2_VITVI (Transcription factor APETALA2 OS=Vitis vinifera GN=AP2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.858e-40
Identity = 108/167 (64.67%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKR--XXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPL-----AVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    VD  + KGKR    S  NSSSSAVVIEDGS+EED    +++ S+ IFGFSV  E  G  PVTRQFFP+++  EM     G A  FP AHWVGVKF QSEPL     A AKS+EA+ P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEES-EMGTTSCGGAAAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTG 166
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: F6H4H7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00220 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.927e-40
Identity = 108/167 (64.67%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEEGKGKR--XXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPL-----AVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    VD  + KGKR    S  NSSSSAVVIEDGS+EED    +++ S+ IFGFSV  E  G  PVTRQFFP+++  EM     G A  FP AHWVGVKF QSEPL     A AKS+EA+ P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDSPDQRRDDESEGCSSQKTSVDSIDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEES-EMGTTSCGGAAAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTG 166
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2T5Z1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G106200 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.748e-40
Identity = 108/172 (62.79%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEED-----AAALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEP-LAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+       ALKK+ S  IFGFSVP      +++  P PVTRQ FPLD+DPEM    +G   GFP AHWVG+KFRQSEP L   KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMQSSDPTPVTRQLFPLDEDPEM---GTGAGPGFPRAHWVGIKFRQSEPYLCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2VKY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G106200 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.240e-40
Identity = 108/172 (62.79%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEED-----AAALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEP-LAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+       ALKK+ S  IFGFSVP      +++  P PVTRQ FPLD+DPEM    +G   GFP AHWVG+KFRQSEP L   KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMQSSDPTPVTRQLFPLDEDPEM---GTGAGPGFPRAHWVGIKFRQSEPYLCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2T5Z2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G106200 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.398e-40
Identity = 108/172 (62.79%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEED-----AAALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEP-LAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+       ALKK+ S  IFGFSVP      +++  P PVTRQ FPLD+DPEM    +G   GFP AHWVG+KFRQSEP L   KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMQSSDPTPVTRQLFPLDEDPEM---GTGAGPGFPRAHWVGIKFRQSEPYLCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: E6NU83_JATCU (JHL03K20.2 protein OS=Jatropha curcas GN=JHL03K20.2 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.029e-39
Identity = 118/170 (69.41%), Postives = 131/170 (77.06%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSS---PVDGEE-GKGKRXXXXXXXXXXXXXIEDGSEEEDAAA-----LKKRNSNMIFGFSVPVE--TGGPAPVTRQFFPLDQDPEMRAVPSGTA-QGFPMAHWVGVKFRQSE-PLAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLNDSPD+ RD+ESEGCSS    +DGE+  KGKRVGSVSNSSSSAVVIEDGSEEED A+     +KKR S  IFGFSVP E      APVTRQFFP+ +D EM A  +G+   GFP AHWVGVKF QSE  LA  KSVE + P+KKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDSPDQRRDDESEGCSSQKTSLDGEDDNKGKRVGSVSNSSSSAVVIEDGSEEEDHASAERGRIKKRTSK-IFGFSVPREDYMDTDAPVTRQFFPV-EDQEMGATSAGSGGAGFPRAHWVGVKFCQSESSLASPKSVEMSQPLKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2RK80_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G106200 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.077e-39
Identity = 108/172 (62.79%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEED-----AAALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEP-LAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+       ALKK+ S  IFGFSVP      +++  P PVTRQ FPLD+DPEM    +G   GFP AHWVG+KFRQSEP L   KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMQSSDPTPVTRQLFPLDEDPEM---GTGAGPGFPRAHWVGIKFRQSEPYLCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Match: A0A0D2US49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G106200 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.100e-39
Identity = 108/172 (62.79%), Postives = 125/172 (72.67%), Query Frame = 3 
Query:   87 MWDLNDSPDRSRDEESEGCSSPVD---GEEGKGKRXXXXXXXXXXXXXIEDGSEEED-----AAALKKRNSNMIFGFSVP------VETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEP-LAVAKSVEATNPMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND P ++RD+E EGCS+      G+ G  KR GS+SNS SSAVVIEDGSEEE+       ALKK+ S  IFGFSVP      +++  P PVTRQ FPLD+DPEM    +G   GFP AHWVG+KFRQSEP L   KSVE++ PMKKSRRGPRSRSSQYRGVT+YRRTG
Sbjct:    1 MWDLNDCPYKARDDEYEGCSTQRTSKYGDAGNCKRFGSMSNSCSSAVVIEDGSEEEEDREGVKTALKKKGSK-IFGFSVPYDEEESMQSSDPTPVTRQLFPLDEDPEM---GTGAGPGFPRAHWVGIKFRQSEPYLCGGKSVESSGPMKKSRRGPRSRSSQYRGVTYYRRTG 168
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.505e-17
Identity = 86/170 (50.59%), Postives = 103/170 (60.59%), Query Frame = 3 
Query:   87 MWDLNDSPDRS-RDEESE--GCSSPVDGEEGKGKRXXXXXXXXXXXXXIEDGSEEEDAAALKKRNSNMIFGFSVPVETGGPAPVTRQFFPLDQDPEMRAVPSGTAQGFPMAHWVGVKFRQSEPLAVAKSVEATN----------PMKKXXXXXXXXXXQYRGVTFYRRTG 557
            MWDLND+P ++ R+EESE    SSP        KRVGS SNSSSSAVVIEDGS++++   ++  N         P+       VT QFFP     EM +   G A GFP AHW GVKF QS+    + + +ATN          P+KKSRRGPRSRSSQYRGVTFYRRTG
Sbjct:    1 MWDLNDAPHQTQREEESEEFCYSSP-------SKRVGSFSNSSSSAVVIEDGSDDDELNRVRPNN---------PL-------VTHQFFP-----EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTG 142
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PRK2_GOSAR2.753e-4373.53Floral homeotic protein APETALA 2 OS=Gossypium arb... [more]
A5BFY6_VITVI1.129e-4064.67Putative uncharacterized protein OS=Vitis vinifera... [more]
C1KBJ2_VITVI1.858e-4064.67Transcription factor APETALA2 OS=Vitis vinifera GN... [more]
F6H4H7_VITVI1.927e-4064.67Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0D2T5Z1_GOSRA2.748e-4062.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VKY5_GOSRA3.240e-4062.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2T5Z2_GOSRA7.398e-4062.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
E6NU83_JATCU1.029e-3969.41JHL03K20.2 protein OS=Jatropha curcas GN=JHL03K20.... [more]
A0A0D2RK80_GOSRA1.077e-3962.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2US49_GOSRA1.100e-3962.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0020780 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AP2_ARATH1.505e-1750.59Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031112AP2-like ethylene-responsive transcription factorPANTHERPTHR32467FAMILY NOT NAMEDcoord: 1..157
NoneNo IPR availablePANTHERPTHR32467:SF18FLORAL HOMEOTIC PROTEIN APETALA 2coord: 1..157

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020780 ID=g.arboreum_cottongen_reftransV1_0020780; Name=g.arboreum_cottongen_reftransV1_0020780; organism=Gossypium arboreum; type=contig; length=557bp
GTTTTTTTGAGAATTTTCTGCTTTGAAAATATATAGTATCTTCGTGATTT
TTAATAGCTGAAAAAGTTTGTGAAGTGAAAAAAAAAATGTGGGATCTTAA
CGATTCTCCTGATCGTTCAAGAGACGAGGAATCGGAAGGGTGTTCATCGC
CGGTAGACGGCGAAGAAGGGAAGGGTAAACGGGTTGGATCCGTTTCGAAT
TCGAGTTCTTCCGCCGTGGTGATCGAGGATGGATCAGAGGAAGAAGATGC
AGCAGCTTTAAAGAAACGAAACAGTAACATGATTTTTGGGTTCTCGGTGC
CTGTCGAGACCGGTGGACCAGCTCCGGTGACTCGTCAGTTTTTTCCACTT
GACCAAGACCCAGAAATGAGGGCAGTTCCCAGCGGAACTGCACAAGGGTT
CCCCATGGCTCACTGGGTCGGAGTCAAATTCCGGCAATCGGAACCACTCG
CCGTTGCTAAATCCGTTGAAGCTACGAATCCCATGAAAAAAAGTAGAAGA
GGACCAAGGTCAAGAAGCTCTCAATATAGAGGTGTTACTTTCTATAGAAG
AACCGGC
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031112AP2-like_transcript_factor
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0007275multicellular organism development
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity