g.arboreum_cottongen_reftransV1_0000642, g.arboreum_cottongen_reftransV1_0000642 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000642
Unique Nameg.arboreum_cottongen_reftransV1_0000642
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length560
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0000642:1..559 .
Chr4:50655263..50655821 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A061DV80_THECC (Helicase/SANT-associated, putative isoform 3 OS=Theobroma cacao GN=TCM_002924 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.938e-25
Identity = 133/191 (69.63%), Postives = 145/191 (75.92%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKE----RXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQAYAMRLAKE    +  Q+     QQQPQQQQQ+QF ASS L+  VQPQTQ    S    +  Q Q       +    PSSPMTPMS QHQQKHHLA HGLGR+PQ GASGL NQIGKQRQRQ QQQQQQFQQSGRHHPQQRQQ QSQQQ KLLKG+GRGN+L+HQNLS DPAHLNGL+MAP
Sbjct: 1389 SNHATGSQQQAYAMRLAKERQMQQHQQRLMQQHQQQPQQQQQQQFAASSALMPQVQPQTQLPISSLQNSSQIQSQPSTQPVSLPPLTPSSPMTPMSLQHQQKHHLASHGLGRNPQPGASGLTNQIGKQRQRQSQQQQQQFQQSGRHHPQQRQQTQSQQQAKLLKGMGRGNVLMHQNLSVDPAHLNGLTMAP 1579
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A061DPA2_THECC (Helicase/SANT-associated, putative isoform 1 OS=Theobroma cacao GN=TCM_002924 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.139e-25
Identity = 133/191 (69.63%), Postives = 145/191 (75.92%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKE----RXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQAYAMRLAKE    +  Q+     QQQPQQQQQ+QF ASS L+  VQPQTQ    S    +  Q Q       +    PSSPMTPMS QHQQKHHLA HGLGR+PQ GASGL NQIGKQRQRQ QQQQQQFQQSGRHHPQQRQQ QSQQQ KLLKG+GRGN+L+HQNLS DPAHLNGL+MAP
Sbjct: 1540 SNHATGSQQQAYAMRLAKERQMQQHQQRLMQQHQQQPQQQQQQQFAASSALMPQVQPQTQLPISSLQNSSQIQSQPSTQPVSLPPLTPSSPMTPMSLQHQQKHHLASHGLGRNPQPGASGLTNQIGKQRQRQSQQQQQQFQQSGRHHPQQRQQTQSQQQAKLLKGMGRGNVLMHQNLSVDPAHLNGLTMAP 1730
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A061DMI8_THECC (Helicase/SANT-associated, putative isoform 5 OS=Theobroma cacao GN=TCM_002924 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.246e-25
Identity = 133/191 (69.63%), Postives = 145/191 (75.92%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKE----RXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQAYAMRLAKE    +  Q+     QQQPQQQQQ+QF ASS L+  VQPQTQ    S    +  Q Q       +    PSSPMTPMS QHQQKHHLA HGLGR+PQ GASGL NQIGKQRQRQ QQQQQQFQQSGRHHPQQRQQ QSQQQ KLLKG+GRGN+L+HQNLS DPAHLNGL+MAP
Sbjct: 1512 SNHATGSQQQAYAMRLAKERQMQQHQQRLMQQHQQQPQQQQQQQFAASSALMPQVQPQTQLPISSLQNSSQIQSQPSTQPVSLPPLTPSSPMTPMSLQHQQKHHLASHGLGRNPQPGASGLTNQIGKQRQRQSQQQQQQFQQSGRHHPQQRQQTQSQQQAKLLKGMGRGNVLMHQNLSVDPAHLNGLTMAP 1702
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A061DNA8_THECC (Helicase/SANT-associated, putative isoform 2 OS=Theobroma cacao GN=TCM_002924 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.275e-25
Identity = 133/191 (69.63%), Postives = 145/191 (75.92%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKE----RXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQAYAMRLAKE    +  Q+     QQQPQQQQQ+QF ASS L+  VQPQTQ    S    +  Q Q       +    PSSPMTPMS QHQQKHHLA HGLGR+PQ GASGL NQIGKQRQRQ QQQQQQFQQSGRHHPQQRQQ QSQQQ KLLKG+GRGN+L+HQNLS DPAHLNGL+MAP
Sbjct: 1540 SNHATGSQQQAYAMRLAKERQMQQHQQRLMQQHQQQPQQQQQQQFAASSALMPQVQPQTQLPISSLQNSSQIQSQPSTQPVSLPPLTPSSPMTPMSLQHQQKHHLASHGLGRNPQPGASGLTNQIGKQRQRQSQQQQQQFQQSGRHHPQQRQQTQSQQQAKLLKGMGRGNVLMHQNLSVDPAHLNGLTMAP 1730
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A061DM77_THECC (Helicase/SANT-associated, putative isoform 4 OS=Theobroma cacao GN=TCM_002924 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.580e-25
Identity = 134/191 (70.16%), Postives = 146/191 (76.44%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKE----RXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQAYAMRLAKE    +  Q+     QQQPQQQQQ+QF ASS L+  VQPQTQL   S    +  Q Q       +    PSSPMTPMS QHQQKHHLA HGLGR+PQ GASGL NQIGKQRQRQ QQQQQQFQQSGRHHPQQRQQ QSQQQ KLLKG+GRGN+L+HQNLS DPAHLNGL+MAP
Sbjct: 1541 SNHATGSQQQAYAMRLAKERQMQQHQQRLMQQHQQQPQQQQQQQFAASSALMPQVQPQTQLPISSLQNSSQIQSQPSTQPVSLPPLTPSSPMTPMSLQHQQKHHLASHGLGRNPQPGASGLTNQIGKQRQRQSQQQQQQFQQSGRHHPQQRQQTQSQQQAKLLKGMGRGNVLMHQNLSVDPAHLNGLTMAP 1731
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2PGN3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G226000 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.053e-20
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQ YAMRLAKERQMQ Q+L   QQ QQ  Q  F ASSTL+  VQPQ QLPISS   +S      ++        PSSPM P S Q QQKH L+PHGLGR+PQ GASGLNNQ+GK  QRQ Q  QQQFQQS RHHPQQ QQ QSQQQ+KLLKG GRG  L+HQN+SAD A LNG+SMAP
Sbjct: 1487 SNHATGSQQQVYAMRLAKERQMQPQQLHVHQQQQQPLQP-FAASSTLMPQVQPQAQLPISSLQTSSQIQSQASNQPVSLPLTPSSPMPPTSIQRQQKHQLSPHGLGRNPQPGASGLNNQVGK--QRQRQSLQQQFQQSSRHHPQQHQQTQSQQQSKLLKGGGRG--LMHQNVSADHARLNGVSMAP 1667
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2PGN8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G226000 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.088e-20
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQ YAMRLAKERQMQ Q+L   QQ QQ  Q  F ASSTL+  VQPQ QLPISS   +S      ++        PSSPM P S Q QQKH L+PHGLGR+PQ GASGLNNQ+GK  QRQ Q  QQQFQQS RHHPQQ QQ QSQQQ+KLLKG GRG  L+HQN+SAD A LNG+SMAP
Sbjct: 1516 SNHATGSQQQVYAMRLAKERQMQPQQLHVHQQQQQPLQP-FAASSTLMPQVQPQAQLPISSLQTSSQIQSQASNQPVSLPLTPSSPMPPTSIQRQQKHQLSPHGLGRNPQPGASGLNNQVGK--QRQRQSLQQQFQQSSRHHPQQHQQTQSQQQSKLLKGGGRG--LMHQNVSADHARLNGVSMAP 1696
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2R2D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G226000 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.088e-20
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQ YAMRLAKERQMQ Q+L   QQ QQ  Q  F ASSTL+  VQPQ QLPISS   +S      ++        PSSPM P S Q QQKH L+PHGLGR+PQ GASGLNNQ+GK  QRQ Q  QQQFQQS RHHPQQ QQ QSQQQ+KLLKG GRG  L+HQN+SAD A LNG+SMAP
Sbjct: 1517 SNHATGSQQQVYAMRLAKERQMQPQQLHVHQQQQQPLQP-FAASSTLMPQVQPQAQLPISSLQTSSQIQSQASNQPVSLPLTPSSPMPPTSIQRQQKHQLSPHGLGRNPQPGASGLNNQVGK--QRQRQSLQQQFQQSSRHHPQQHQQTQSQQQSKLLKGGGRG--LMHQNVSADHARLNGVSMAP 1697
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2N2B8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G226000 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.188e-20
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQ YAMRLAKERQMQ Q+L   QQ QQ  Q  F ASSTL+  VQPQ QLPISS   +S      ++        PSSPM P S Q QQKH L+PHGLGR+PQ GASGLNNQ+GK  QRQ Q  QQQFQQS RHHPQQ QQ QSQQQ+KLLKG GRG  L+HQN+SAD A LNG+SMAP
Sbjct: 1415 SNHATGSQQQVYAMRLAKERQMQPQQLHVHQQQQQPLQP-FAASSTLMPQVQPQAQLPISSLQTSSQIQSQASNQPVSLPLTPSSPMPPTSIQRQQKHQLSPHGLGRNPQPGASGLNNQVGK--QRQRQSLQQQFQQSSRHHPQQHQQTQSQQQSKLLKGGGRG--LMHQNVSADHARLNGVSMAP 1595
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Match: A0A0D2R931_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G226000 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.193e-20
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 3 
Query:    3 SNHASGPQQQAYAMRLAKERXXXXXXXXXXXXXXXXXXXXFTASSTLLSHVQPQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQQKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSMAP 560
            SNHA+G QQQ YAMRLAKERQMQ Q+L   QQ QQ  Q  F ASSTL+  VQPQ QLPISS   +S      ++        PSSPM P S Q QQKH L+PHGLGR+PQ GASGLNNQ+GK  QRQ Q  QQQFQQS RHHPQQ QQ QSQQQ+KLLKG GRG  L+HQN+SAD A LNG+SMAP
Sbjct: 1504 SNHATGSQQQVYAMRLAKERQMQPQQLHVHQQQQQPLQP-FAASSTLMPQVQPQAQLPISSLQTSSQIQSQASNQPVSLPLTPSSPMPPTSIQRQQKHQLSPHGLGRNPQPGASGLNNQVGK--QRQRQSLQQQFQQSSRHHPQQHQQTQSQQQSKLLKGGGRG--LMHQNVSADHARLNGVSMAP 1684
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Match: EAF1B_ARATH (Chromatin modification-related protein EAF1 B OS=Arabidopsis thaliana GN=EAF1B PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.038e-10
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:  288 QKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSM 554
            QK  LA HGLGRSPQ+G SG+NNQ GK       Q+Q+Q QQS R HP QRQ  Q QQ  K LKG+GRGNM +HQN++ D +HLNGL+M
Sbjct: 1542 QKSQLALHGLGRSPQSGTSGVNNQAGK-------QRQRQLQQSARQHPHQRQPTQGQQLNKQLKGMGRGNM-IHQNITVDQSHLNGLTM 1622
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Match: EAF1A_ARATH (Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana GN=EAF1A PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.415e-10
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 3 
Query:  288 QKHHLAPHGLGRSPQTGASGLNNQIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLKGVGRGNMLVHQNLSADPAHLNGLSM 554
            QK  LA HGLGRSPQ+G SG+NNQ GK       Q+Q+Q QQS R HP QRQ  Q QQ  K LKG+GRGNM +HQN++ D +HLNGL+M
Sbjct: 1592 QKSQLALHGLGRSPQSGTSGVNNQAGK-------QRQRQLQQSARQHPHQRQPTQGQQLNKQLKGMGRGNM-IHQNITVDQSHLNGLTM 1672
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061DV80_THECC5.938e-2569.63Helicase/SANT-associated, putative isoform 3 OS=Th... [more]
A0A061DPA2_THECC6.139e-2569.63Helicase/SANT-associated, putative isoform 1 OS=Th... [more]
A0A061DMI8_THECC6.246e-2569.63Helicase/SANT-associated, putative isoform 5 OS=Th... [more]
A0A061DNA8_THECC6.275e-2569.63Helicase/SANT-associated, putative isoform 2 OS=Th... [more]
A0A061DM77_THECC6.580e-2570.16Helicase/SANT-associated, putative isoform 4 OS=Th... [more]
A0A0D2PGN3_GOSRA1.053e-2065.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PGN8_GOSRA1.088e-2065.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R2D0_GOSRA1.088e-2065.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2N2B8_GOSRA1.188e-2065.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R931_GOSRA1.193e-2065.59Uncharacterized protein OS=Gossypium raimondii GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0000642 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EAF1B_ARATH3.038e-1060.67Chromatin modification-related protein EAF1 B OS=A... [more]
EAF1A_ARATH3.415e-1060.67Chromatin modification-related protein EAF1 A OS=A... [more]
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000642 ID=g.arboreum_cottongen_reftransV1_0000642; Name=g.arboreum_cottongen_reftransV1_0000642; organism=Gossypium arboreum; type=contig; length=560bp
GTTCCAATCATGCTTCCGGGCCGCAGCAACAAGCATATGCCATGCGCCTC
GCTAAAGAAAGGCAAATGCAGCAGCAGCGTCTTATGCAGCAACAGCAGCC
CCAGCAACAGCAGCAAAAACAGTTCACTGCATCTAGCACTTTGCTGTCAC
ATGTCCAGCCTCAGACCCAACTTCCCATATCCTCTTCTCTTCAGAATAGT
TCCCAGATTCAATCTCAAGCATCAACTCAACCAGTGTCACTCCCCCCTCC
ATCTTCACCAATGACTCCTATGTCATCACAGCACCAACAGAAACACCACT
TGGCCCCTCATGGACTTGGTAGGAGTCCCCAAACTGGTGCTAGTGGATTG
AACAATCAGATAGGCAAGCAACGGCAGCGGCAACCCCAGCAACAGCAGCA
GCAGTTTCAACAGTCTGGCAGGCACCATCCTCAGCAACGACAACAACCTC
AGTCCCAACAGCAAACTAAACTTTTGAAGGGAGTAGGAAGAGGGAACATG
CTGGTGCATCAGAACCTTTCCGCTGACCCTGCTCATCTGAATGGCCTCAG
CATGGCCCCA
back to top