g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: K4D4L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g005980.1 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 8.433e-59 Identity = 113/141 (80.14%), Postives = 129/141 (91.49%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT MLF FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK Sbjct: 1790 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMLFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: C8C9X3_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CalS5 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.029e-58 Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: M1CSN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028665 PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.086e-58 Identity = 111/141 (78.72%), Postives = 128/141 (90.78%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT M+F FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRIL G KK Sbjct: 947 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMMFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILTGGKKH 1087
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V4NWB2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022518mg PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.215e-58 Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 IILKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ Sbjct: 1769 IILKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVGRQLMKAVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1909
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V7AVW9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G1503001g PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.326e-58 Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 +ILKIVSMGR +FSADFQLMFRL+KL LF+G IV + ++F L+LTIGDIF S+LAF+PT WAL+QI+QACR VKGIGMWGSVKALARGYEY+MGV++FAP+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK Sbjct: 947 VILKIVSMGRKQFSADFQLMFRLVKLFLFVGAIVVLTLMFTLLSLTIGDIFASLLAFLPTAWALIQIAQACRPFVKGIGMWGSVKALARGYEYLMGVIIFAPVVILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKD 1087
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.773e-23 Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGM-WGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++ ++ R K+SA + +RL++ LL + I+ I L F + + DIF S+LAF+PTGW +L I+Q R +K + W +V ++AR Y+ + G+L+ P+A L+W P QTR+LFN+AFSRGL+I +I+ G K + Sbjct: 1636 VLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSK 1777
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.347e-22 Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 3 Query: 126 FLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419 F LT+ D+ S+LAF+PTGW L+ I+Q + + +W +V ++AR Y+ G+++ AP+A+L+W P QTR+LFN+AFSRGLQI ILAG K Sbjct: 1669 FTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGKK 1766 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 12
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bpback to top |