g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002266
Unique Nameg.arboreum_cottongen_reftransV1_0002266
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length528
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0002266:1..528 .
Chr9:95967023..95967736 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: K4D4L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g005980.1 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.433e-59
Identity = 113/141 (80.14%), Postives = 129/141 (91.49%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT  MLF FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1790 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMLFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: C8C9X3_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CalS5 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.029e-58
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ  R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: M1CSN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028665 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.086e-58
Identity = 111/141 (78.72%), Postives = 128/141 (90.78%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT  M+F FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRIL G KK 
Sbjct:  947 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMMFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILTGGKKH 1087          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V4NWB2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022518mg PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.215e-58
Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            IILKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ  R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1769 IILKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVGRQLMKAVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1909          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V7AVW9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G1503001g PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.326e-58
Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVSMGR +FSADFQLMFRL+KL LF+G IV + ++F  L+LTIGDIF S+LAF+PT WAL+QI+QACR  VKGIGMWGSVKALARGYEY+MGV++FAP+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct:  947 VILKIVSMGRKQFSADFQLMFRLVKLFLFVGAIVVLTLMFTLLSLTIGDIFASLLAFLPTAWALIQIAQACRPFVKGIGMWGSVKALARGYEYLMGVIIFAPVVILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKD 1087          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.773e-23
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGM-WGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++  ++   R K+SA   + +RL++ LL +  I+ I  L  F + +  DIF S+LAF+PTGW +L I+Q  R  +K   + W +V ++AR Y+ + G+L+  P+A L+W P     QTR+LFN+AFSRGL+I +I+ G K +
Sbjct: 1636 VLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSK 1777          
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.347e-22
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  126 FLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419
            F  LT+ D+  S+LAF+PTGW L+ I+Q  +  +    +W +V ++AR Y+   G+++ AP+A+L+W P     QTR+LFN+AFSRGLQI  ILAG K
Sbjct: 1669 FTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGKK 1766          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K4D4L1_SOLLC8.433e-5980.14Uncharacterized protein OS=Solanum lycopersicum GN... [more]
C8C9X3_ARATH1.029e-5880.14Callose synthase 5 OS=Arabidopsis thaliana GN=CalS... [more]
M1CSN6_SOLTU1.086e-5878.72Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
V4NWB2_EUTSA1.215e-5880.85Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
V7AVW9_PHAVU1.326e-5878.72Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSC_ARATH2.773e-2339.44Callose synthase 12 OS=Arabidopsis thaliana GN=CAL... [more]
CALSB_ARATH9.347e-2246.94Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12741LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1coord: 1..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bp
TGATTATTTTGAAGATAGTGTCGATGGGGAGAATGAAGTTCAGTGCGGAT
TTCCAGTTGATGTTCAGACTTCTTAAGCTATTACTGTTTATTGGGTGTAT
AGTCACCATTGCAATGTTGTTTTATTTCCTTAATCTCACAATTGGAGATA
TCTTCCAGAGCATACTGGCCTTTATGCCGACAGGGTGGGCTCTTCTGCAG
ATATCACAAGCATGTCGAACACTGGTGAAGGGAATAGGAATGTGGGGGTC
AGTAAAGGCACTAGCAAGAGGGTATGAATACATGATGGGTGTGTTACTGT
TTGCACCAATAGCTATATTGGCATGGTTCCCCTTCGTCTCAGAATTCCAG
ACCAGGCTGCTATTCAACCAAGCTTTCAGCCGAGGCCTCCAAATCCAACG
TATTCTGGCTGGCAGCAAGAAGCAAGCCTAAATAAATTGAAAAAAGAATA
AAAACCGAACCACGTATGTAGCAGATGCCACTAGGGGTGAAGGAATGGGA
GGAAATAATTTAGTGGTTTCTAATTTTG
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