g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: K4D4L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g005980.1 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 8.433e-59 Identity = 113/141 (80.14%), Postives = 129/141 (91.49%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT MLF FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK Sbjct: 1790 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMLFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: C8C9X3_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CalS5 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.029e-58 Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: M1CSN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028665 PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.086e-58 Identity = 111/141 (78.72%), Postives = 128/141 (90.78%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++LKIVS+GR KFSADFQLMFRLLKL LFIG IVT M+F FL+LT+GDIF S+LAF+PTGWALL I+QACR +VKGIGMWGSVKALARGY+Y+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRIL G KK Sbjct: 947 VVLKIVSLGRKKFSADFQLMFRLLKLFLFIGFIVTFVMMFKFLSLTVGDIFASLLAFLPTGWALLSIAQACRPVVKGIGMWGSVKALARGYDYLMGLVIFTPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILTGGKKH 1087
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V4NWB2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022518mg PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.215e-58 Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 IILKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ Sbjct: 1769 IILKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVGRQLMKAVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1909
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: V7AVW9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G1503001g PE=4 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.326e-58 Identity = 111/141 (78.72%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 +ILKIVSMGR +FSADFQLMFRL+KL LF+G IV + ++F L+LTIGDIF S+LAF+PT WAL+QI+QACR VKGIGMWGSVKALARGYEY+MGV++FAP+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK Sbjct: 947 VILKIVSMGRKQFSADFQLMFRLVKLFLFVGAIVVLTLMFTLLSLTIGDIFASLLAFLPTAWALIQIAQACRPFVKGIGMWGSVKALARGYEYLMGVIIFAPVVILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKD 1087
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS5_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.204e-60 Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS7_ARATH (Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=3 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 3.262e-48 Identity = 91/141 (64.54%), Postives = 113/141 (80.14%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++LK+VSMGR KF DFQ+MFR+LK LLF+G + + +LF LTI D+F SILAF+PTGWA+L I QA R++ KG+G W SVK L R YEY+MG+++F PIA+L+WFPFVSEFQTRLLFNQAFSRGLQI ILAG K + Sbjct: 1787 LVLKMVSMGRRKFGTDFQVMFRILKALLFLGFLSVMTVLFVVCGLTISDLFASILAFLPTGWAILLIGQALRSVFKGLGFWDSVKELGRAYEYIMGLVIFTPIAVLSWFPFVSEFQTRLLFNQAFSRGLQISMILAGKKDK 1927
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS3_ARATH (Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3) HSP 1 Score: 157.147 bits (396), Expect = 2.316e-42 Identity = 88/140 (62.86%), Postives = 108/140 (77.14%), Query Frame = 3 Query: 6 ILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 ++K VS+GR +FSA FQLMFRL+K L+F+ I I +L ++TI DI ILAFMPTGW +L I+QAC+ +V G WGSV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K Sbjct: 1809 VMKTVSVGRRRFSASFQLMFRLIKGLIFMTFIAIIVILITLAHMTIQDIIVCILAFMPTGWGMLLIAQACKPVVHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHRKD 1948
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS6_ARATH (Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 3.208e-42 Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 3 Query: 12 KIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428 K+VSMGR +F DFQLMFR+LK LLF+G + + +LF LT+ D+ S+LAF+PTGWA+L I Q R+ +K +G+W SVK L R YE +MG+++FAPIA+L+WFP VSEFQ RLLFNQAFSRGLQI ILAG K +A Sbjct: 1778 KMVSMGRRRFGTDFQLMFRILKALLFLGFLSVMTILFVVFKLTLTDLSASVLAFLPTGWAILLIGQVLRSPIKALGVWDSVKELGRAYENIMGLVIFAPIAVLSWFPIVSEFQARLLFNQAFSRGLQISMILAGRKDKA 1916
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS1_ARATH (Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 1.175e-38 Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 3 Query: 108 IAMLFYFLNL---TIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 +A+L FL L TI D+F +LAFMPTGW +L I+QAC+ L++ +G+W SV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K Sbjct: 1835 VAILITFLALPLITIKDLFICMLAFMPTGWGMLLIAQACKPLIQQLGIWSSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKD 1943
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS2_ARATH (Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 1.724e-38 Identity = 83/144 (57.64%), Postives = 109/144 (75.69%), Query Frame = 3 Query: 3 IILKIVSMGRMKFSADXXXXXXXXX---XXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 +I+K + +GR +FS +FQL+FR++K L F+G ++T L + LT DIF +LAFMPTGW +L I+QAC+ L++ +G W SV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K Sbjct: 1803 LIVKGLGVGRQRFSTNFQLLFRIIKGFVFLTFLGLLITFLALRF---LTPKDIFLCMLAFMPTGWGMLLIAQACKPLIQRLGFWSSVRTLARGYEILMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKD 1943
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS8_ARATH (Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 8.519e-32 Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 3 Query: 9 LKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 +K V +GR FS L+FR K+ +F+ + I L +L++ D+ S LAF+PTGW L+ I+QA R ++G +W + LAR Y+Y MGV+LFAP+AILAW P +S FQTR LFN+AF+R LQIQ ILAG KK Sbjct: 1837 VKAVDLGRQLFSTRKHLVFRFFKVFVFVSILTIIITLANICHLSVKDLLVSCLAFLPTGWGLILIAQAVRPKIEGTSLWEFTQVLARAYDYGMGVVLFAPMAILAWLPIISAFQTRFLFNEAFNRRLQIQPILAGKKKN 1975
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS4_ARATH (Callose synthase 4 OS=Arabidopsis thaliana GN=CALS4 PE=3 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 7.268e-31 Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 3 Query: 147 DIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425 D+F +LA +PTGW LL I+Q+C+ L++ G+W V LA Y+ +MG LLF PIA +AWFPF+SEFQTR+LFNQAFSRGL I RIL+G +K Sbjct: 1772 DVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKH 1864
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS9_ARATH (Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 9.227e-30 Identity = 53/98 (54.08%), Postives = 77/98 (78.57%), Query Frame = 3 Query: 135 LTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428 L++ DIF +LAF+PTGW +L I+ A + ++K +GMW S+++LAR Y+ +MG+L+F P+A+ +WFPFVS FQTR++FNQAFSRGL+I ILAG + Sbjct: 1791 LSVTDIFACVLAFIPTGWGILSIACAWKPVLKRMGMWKSIRSLARLYDALMGMLIFLPVALCSWFPFVSTFQTRMMFNQAFSRGLEISLILAGDNPNS 1888
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5) HSP 1 Score: 115.931 bits (289), Expect = 3.982e-28 Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 3 Query: 99 IVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419 +V IAM +L+I D+F +L F+PTGWALL ++ + +++ +G+W +V+ R Y+ MG+L+F+PIA+L+WFPF+S FQ+RLLFNQAFSRGL+I ILAG++ Sbjct: 1797 VVAIAMT----DLSIPDMFACVLGFIPTGWALLSLAITWKQVLRVLGLWETVREFGRIYDAAMGMLIFSPIALLSWFPFISTFQSRLLFNQAFSRGLEISIILAGNR 1899 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 12
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bpback to top |