g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002266
Unique Name	g.arboreum_cottongen_reftransV1_0002266
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	528

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0002266:1..528 . Chr9:95967023..95967736 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A078HFN9_BRANA (BnaA09g08360D protein OS=Brassica napus GN=BnaA09g08360D PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.241e-61
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct:  562 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 702

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: U6C0V2_NICAL (Putative callose synthase OS=Nicotiana alata GN=NaGSL1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 9.980e-61
Identity = 116/141 (82.27%), Postives = 132/141 (93.62%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVSMGR KFSADFQLMFRLLKL LFIG IVT+ +LF FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKGIGMWGSVKALARGYEY+MG+++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1790 VVLKIVSMGRKKFSADFQLMFRLLKLFLFIGFIVTLVVLFKFLSLTVGDIFASLLAFLPTGWALLQIAQACRPVVKGIGMWGSVKALARGYEYLMGLVIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: Q93XQ3_NICAL (Putative beta-1,3-glucan synthase OS=Nicotiana alata GN=Gsl1 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.027e-60
Identity = 116/141 (82.27%), Postives = 132/141 (93.62%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVSMGR KFSADFQLMFRLLKL LFIG IVT+ +LF FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKGIGMWGSVKALARGYEY+MG+++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1790 VVLKIVSMGRKKFSADFQLMFRLLKLFLFIGFIVTLVVLFKFLSLTVGDIFASLLAFLPTGWALLQIAQACRPVVKGIGMWGSVKALARGYEYLMGLVIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A059AK67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00208 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.576e-60
Identity = 116/141 (82.27%), Postives = 131/141 (92.91%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVSMGR KFSADFQLMFRLLKL LFIG +VT+ MLF FL+LT+GDIF S+LAF+PTGWALLQISQACR LVKG+GMWGSVKALARG+EY+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1695 VILKIVSMGRKKFSADFQLMFRLLKLFLFIGFMVTLGMLFAFLSLTVGDIFASLLAFLPTGWALLQISQACRPLVKGLGMWGSVKALARGFEYLMGLVIFTPVAMLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1835

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: B9SUQ8_RICCO (Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0627050 PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.448e-60
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVS GR KFSADFQLMFRLLKL LFIGC+VT+ +LF  L+LT+GDI QS+LAF+PTGWALLQI+QACR +VKG+ MWGSVKALARGYEYMMG+ +FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1723 VILKIVSKGRKKFSADFQLMFRLLKLFLFIGCVVTLVILFTTLHLTVGDILQSLLAFLPTGWALLQIAQACRPVVKGLKMWGSVKALARGYEYMMGLAIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1863

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A068UAR2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018753001 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.015e-59
Identity = 114/141 (80.85%), Postives = 130/141 (92.20%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            IILKIVSMGR KFSADFQLMFRLLK+ LFI  +VTI ++F FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKG+GMWGSVKALARGYEY+MG+++F PIA+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1771 IILKIVSMGRKKFSADFQLMFRLLKMFLFIAFLVTIGIMFTFLSLTVGDIFSSLLAFLPTGWALLQIAQACRPIVKGLGMWGSVKALARGYEYLMGLVIFTPIAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1911

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: M4F802_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037213 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.564e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1769 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1909

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A078CWC4_BRANA (BnaC09g08620D protein OS=Brassica napus GN=BnaC09g08620D PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.831e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1791 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1931

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0D3E2V1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=CALS5 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.841e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1641 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1781

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: D7L053_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899601 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.056e-59
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ  R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARQLMKAVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.773e-23
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGM-WGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++  ++   R K+SA   + +RL++ LL +  I+ I  L  F + +  DIF S+LAF+PTGW +L I+Q  R  +K   + W +V ++AR Y+ + G+L+  P+A L+W P     QTR+LFN+AFSRGL+I +I+ G K +
Sbjct: 1636 VLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSK 1777

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.347e-22
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 3

Query:  126 FLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419
            F  LT+ D+  S+LAF+PTGW L+ I+Q  +  +    +W +V ++AR Y+   G+++ AP+A+L+W P     QTR+LFN+AFSRGLQI  ILAG K
Sbjct: 1669 FTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGKK 1766

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A078HFN9_BRANA	6.241e-61	81.56	BnaA09g08360D protein OS=Brassica napus GN=BnaA09g...	[more]
U6C0V2_NICAL	9.980e-61	82.27	Putative callose synthase OS=Nicotiana alata GN=Na...	[more]
Q93XQ3_NICAL	1.027e-60	82.27	Putative beta-1,3-glucan synthase OS=Nicotiana ala...	[more]
A0A059AK67_EUCGR	3.576e-60	82.27	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
B9SUQ8_RICCO	7.448e-60	80.85	Transferase, transferring glycosyl groups, putativ...	[more]
A0A068UAR2_COFCA	1.015e-59	80.85	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
M4F802_BRARP	2.564e-59	81.56	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078CWC4_BRANA	2.831e-59	81.56	BnaC09g08620D protein OS=Brassica napus GN=BnaC09g...	[more]
A0A0D3E2V1_BRAOL	2.841e-59	81.56	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
D7L053_ARALL	7.056e-59	80.14	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
CALSC_ARATH	2.773e-23	39.44	Callose synthase 12 OS=Arabidopsis thaliana GN=CAL...	[more]
CALSB_ARATH	9.347e-22	46.94	Callose synthase 11 OS=Arabidopsis thaliana GN=CAL...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 1..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 48..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..47
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..109
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 110..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	TMHMM	TMhelix		coord: 88..110
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bp
TGATTATTTTGAAGATAGTGTCGATGGGGAGAATGAAGTTCAGTGCGGAT
TTCCAGTTGATGTTCAGACTTCTTAAGCTATTACTGTTTATTGGGTGTAT
AGTCACCATTGCAATGTTGTTTTATTTCCTTAATCTCACAATTGGAGATA
TCTTCCAGAGCATACTGGCCTTTATGCCGACAGGGTGGGCTCTTCTGCAG
ATATCACAAGCATGTCGAACACTGGTGAAGGGAATAGGAATGTGGGGGTC
AGTAAAGGCACTAGCAAGAGGGTATGAATACATGATGGGTGTGTTACTGT
TTGCACCAATAGCTATATTGGCATGGTTCCCCTTCGTCTCAGAATTCCAG
ACCAGGCTGCTATTCAACCAAGCTTTCAGCCGAGGCCTCCAAATCCAACG
TATTCTGGCTGGCAGCAAGAAGCAAGCCTAAATAAATTGAAAAAAGAATA
AAAACCGAACCACGTATGTAGCAGATGCCACTAGGGGTGAAGGAATGGGA
GGAAATAATTTAGTGGTTTCTAATTTTG

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g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

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