g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002266
Unique Name	g.arboreum_cottongen_reftransV1_0002266
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0002266:1..528 . Chr9:95967023..95967736 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A078HFN9_BRANA (BnaA09g08360D protein OS=Brassica napus GN=BnaA09g08360D PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.241e-61
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct:  562 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 702

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: U6C0V2_NICAL (Putative callose synthase OS=Nicotiana alata GN=NaGSL1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 9.980e-61
Identity = 116/141 (82.27%), Postives = 132/141 (93.62%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVSMGR KFSADFQLMFRLLKL LFIG IVT+ +LF FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKGIGMWGSVKALARGYEY+MG+++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1790 VVLKIVSMGRKKFSADFQLMFRLLKLFLFIGFIVTLVVLFKFLSLTVGDIFASLLAFLPTGWALLQIAQACRPVVKGIGMWGSVKALARGYEYLMGLVIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: Q93XQ3_NICAL (Putative beta-1,3-glucan synthase OS=Nicotiana alata GN=Gsl1 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.027e-60
Identity = 116/141 (82.27%), Postives = 132/141 (93.62%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LKIVSMGR KFSADFQLMFRLLKL LFIG IVT+ +LF FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKGIGMWGSVKALARGYEY+MG+++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1790 VVLKIVSMGRKKFSADFQLMFRLLKLFLFIGFIVTLVVLFKFLSLTVGDIFASLLAFLPTGWALLQIAQACRPVVKGIGMWGSVKALARGYEYLMGLVIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1930

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A059AK67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00208 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.576e-60
Identity = 116/141 (82.27%), Postives = 131/141 (92.91%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVSMGR KFSADFQLMFRLLKL LFIG +VT+ MLF FL+LT+GDIF S+LAF+PTGWALLQISQACR LVKG+GMWGSVKALARG+EY+MG+++F P+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1695 VILKIVSMGRKKFSADFQLMFRLLKLFLFIGFMVTLGMLFAFLSLTVGDIFASLLAFLPTGWALLQISQACRPLVKGLGMWGSVKALARGFEYLMGLVIFTPVAMLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1835

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: B9SUQ8_RICCO (Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0627050 PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.448e-60
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVS GR KFSADFQLMFRLLKL LFIGC+VT+ +LF  L+LT+GDI QS+LAF+PTGWALLQI+QACR +VKG+ MWGSVKALARGYEYMMG+ +FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1723 VILKIVSKGRKKFSADFQLMFRLLKLFLFIGCVVTLVILFTTLHLTVGDILQSLLAFLPTGWALLQIAQACRPVVKGLKMWGSVKALARGYEYMMGLAIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1863

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A068UAR2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_13 OS=Coffea canephora GN=GSCOC_T00018753001 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.015e-59
Identity = 114/141 (80.85%), Postives = 130/141 (92.20%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            IILKIVSMGR KFSADFQLMFRLLK+ LFI  +VTI ++F FL+LT+GDIF S+LAF+PTGWALLQI+QACR +VKG+GMWGSVKALARGYEY+MG+++F PIA+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1771 IILKIVSMGRKKFSADFQLMFRLLKMFLFIAFLVTIGIMFTFLSLTVGDIFSSLLAFLPTGWALLQIAQACRPIVKGLGMWGSVKALARGYEYLMGLVIFTPIAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKH 1911

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: M4F802_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037213 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.564e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1769 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1909

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A078CWC4_BRANA (BnaC09g08620D protein OS=Brassica napus GN=BnaC09g08620D PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.831e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1791 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1931

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0D3E2V1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=CALS5 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.841e-59
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS LAF+PTGWALLQISQ  RTL+K +GMWGSVKALARGYEY+MGV++F P+ ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1641 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDILQSFLAFLPTGWALLQISQVGRTLMKAVGMWGSVKALARGYEYIMGVVIFMPVTILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1781

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: D7L053_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899601 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.056e-59
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ  R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARQLMKAVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS5_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.204e-60
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            I+LKIVSMGR KFSADFQLMFRLLKL LFIG +V + MLF+FL LT+GDI QS+LAF+PTGWALLQISQ  R L+K +GMWGSVKALARGYEY+MGV++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct: 1782 IVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 1922

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS7_ARATH (Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.262e-48
Identity = 91/141 (64.54%), Postives = 113/141 (80.14%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++LK+VSMGR KF  DFQ+MFR+LK LLF+G +  + +LF    LTI D+F SILAF+PTGWA+L I QA R++ KG+G W SVK L R YEY+MG+++F PIA+L+WFPFVSEFQTRLLFNQAFSRGLQI  ILAG K +
Sbjct: 1787 LVLKMVSMGRRKFGTDFQVMFRILKALLFLGFLSVMTVLFVVCGLTISDLFASILAFLPTGWAILLIGQALRSVFKGLGFWDSVKELGRAYEYIMGLVIFTPIAVLSWFPFVSEFQTRLLFNQAFSRGLQISMILAGKKDK 1927

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS3_ARATH (Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 2.316e-42
Identity = 88/140 (62.86%), Postives = 108/140 (77.14%), Query Frame = 3

Query:    6 ILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++K VS+GR +FSA FQLMFRL+K L+F+  I  I +L    ++TI DI   ILAFMPTGW +L I+QAC+ +V   G WGSV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K 
Sbjct: 1809 VMKTVSVGRRRFSASFQLMFRLIKGLIFMTFIAIIVILITLAHMTIQDIIVCILAFMPTGWGMLLIAQACKPVVHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHRKD 1948

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS6_ARATH (Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.208e-42
Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 3

Query:   12 KIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            K+VSMGR +F  DFQLMFR+LK LLF+G +  + +LF    LT+ D+  S+LAF+PTGWA+L I Q  R+ +K +G+W SVK L R YE +MG+++FAPIA+L+WFP VSEFQ RLLFNQAFSRGLQI  ILAG K +A
Sbjct: 1778 KMVSMGRRRFGTDFQLMFRILKALLFLGFLSVMTILFVVFKLTLTDLSASVLAFLPTGWAILLIGQVLRSPIKALGVWDSVKELGRAYENIMGLVIFAPIAVLSWFPIVSEFQARLLFNQAFSRGLQISMILAGRKDKA 1916

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS1_ARATH (Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.175e-38
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 3

Query:  108 IAMLFYFLNL---TIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +A+L  FL L   TI D+F  +LAFMPTGW +L I+QAC+ L++ +G+W SV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K 
Sbjct: 1835 VAILITFLALPLITIKDLFICMLAFMPTGWGMLLIAQACKPLIQQLGIWSSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKD 1943

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS2_ARATH (Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.724e-38
Identity = 83/144 (57.64%), Postives = 109/144 (75.69%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXX---XXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +I+K + +GR +FS +FQL+FR++K    L F+G ++T   L +   LT  DIF  +LAFMPTGW +L I+QAC+ L++ +G W SV+ LARGYE +MG+LLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQI RIL G +K 
Sbjct: 1803 LIVKGLGVGRQRFSTNFQLLFRIIKGFVFLTFLGLLITFLALRF---LTPKDIFLCMLAFMPTGWGMLLIAQACKPLIQRLGFWSSVRTLARGYEILMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKD 1943

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS8_ARATH (Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.519e-32
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 3

Query:    9 LKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +K V +GR  FS    L+FR  K+ +F+  +  I  L    +L++ D+  S LAF+PTGW L+ I+QA R  ++G  +W   + LAR Y+Y MGV+LFAP+AILAW P +S FQTR LFN+AF+R LQIQ ILAG KK 
Sbjct: 1837 VKAVDLGRQLFSTRKHLVFRFFKVFVFVSILTIIITLANICHLSVKDLLVSCLAFLPTGWGLILIAQAVRPKIEGTSLWEFTQVLARAYDYGMGVVLFAPMAILAWLPIISAFQTRFLFNEAFNRRLQIQPILAGKKKN 1975

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS4_ARATH (Callose synthase 4 OS=Arabidopsis thaliana GN=CALS4 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.268e-31
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 3

Query:  147 DIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            D+F  +LA +PTGW LL I+Q+C+ L++  G+W  V  LA  Y+ +MG LLF PIA +AWFPF+SEFQTR+LFNQAFSRGL I RIL+G +K 
Sbjct: 1772 DVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKH 1864

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALS9_ARATH (Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.227e-30
Identity = 53/98 (54.08%), Postives = 77/98 (78.57%), Query Frame = 3

Query:  135 LTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            L++ DIF  +LAF+PTGW +L I+ A + ++K +GMW S+++LAR Y+ +MG+L+F P+A+ +WFPFVS FQTR++FNQAFSRGL+I  ILAG    +
Sbjct: 1791 LSVTDIFACVLAFIPTGWGILSIACAWKPVLKRMGMWKSIRSLARLYDALMGMLIFLPVALCSWFPFVSTFQTRMMFNQAFSRGLEISLILAGDNPNS 1888

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5)

HSP 1 Score: 115.931 bits (289), Expect = 3.982e-28
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 3

Query:   99 IVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419
            +V IAM     +L+I D+F  +L F+PTGWALL ++   + +++ +G+W +V+   R Y+  MG+L+F+PIA+L+WFPF+S FQ+RLLFNQAFSRGL+I  ILAG++
Sbjct: 1797 VVAIAMT----DLSIPDMFACVLGFIPTGWALLSLAITWKQVLRVLGLWETVREFGRIYDAAMGMLIFSPIALLSWFPFISTFQSRLLFNQAFSRGLEISIILAGNR 1899

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A078HFN9_BRANA	6.241e-61	81.56	BnaA09g08360D protein OS=Brassica napus GN=BnaA09g...	[more]
U6C0V2_NICAL	9.980e-61	82.27	Putative callose synthase OS=Nicotiana alata GN=Na...	[more]
Q93XQ3_NICAL	1.027e-60	82.27	Putative beta-1,3-glucan synthase OS=Nicotiana ala...	[more]
A0A059AK67_EUCGR	3.576e-60	82.27	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
B9SUQ8_RICCO	7.448e-60	80.85	Transferase, transferring glycosyl groups, putativ...	[more]
A0A068UAR2_COFCA	1.015e-59	80.85	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
M4F802_BRARP	2.564e-59	81.56	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078CWC4_BRANA	2.831e-59	81.56	BnaC09g08620D protein OS=Brassica napus GN=BnaC09g...	[more]
A0A0D3E2V1_BRAOL	2.841e-59	81.56	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
D7L053_ARALL	7.056e-59	80.14	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
CALS5_ARATH	1.204e-60	80.14	Callose synthase 5 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS7_ARATH	3.262e-48	64.54	Callose synthase 7 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS3_ARATH	2.316e-42	62.86	Callose synthase 3 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS6_ARATH	3.208e-42	60.43	Putative callose synthase 6 OS=Arabidopsis thalian...	[more]
CALS1_ARATH	1.175e-38	64.22	Callose synthase 1 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS2_ARATH	1.724e-38	57.64	Callose synthase 2 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS8_ARATH	8.519e-32	49.64	Putative callose synthase 8 OS=Arabidopsis thalian...	[more]
CALS4_ARATH	7.268e-31	59.14	Callose synthase 4 OS=Arabidopsis thaliana GN=CALS...	[more]
CALS9_ARATH	9.227e-30	54.08	Callose synthase 9 OS=Arabidopsis thaliana GN=CALS...	[more]
CALSA_ARATH	3.982e-28	50.47	Callose synthase 10 OS=Arabidopsis thaliana GN=CAL...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 1..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 48..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..47
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..109
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 110..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	TMHMM	TMhelix		coord: 88..110
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bp
TGATTATTTTGAAGATAGTGTCGATGGGGAGAATGAAGTTCAGTGCGGAT
TTCCAGTTGATGTTCAGACTTCTTAAGCTATTACTGTTTATTGGGTGTAT
AGTCACCATTGCAATGTTGTTTTATTTCCTTAATCTCACAATTGGAGATA
TCTTCCAGAGCATACTGGCCTTTATGCCGACAGGGTGGGCTCTTCTGCAG
ATATCACAAGCATGTCGAACACTGGTGAAGGGAATAGGAATGTGGGGGTC
AGTAAAGGCACTAGCAAGAGGGTATGAATACATGATGGGTGTGTTACTGT
TTGCACCAATAGCTATATTGGCATGGTTCCCCTTCGTCTCAGAATTCCAG
ACCAGGCTGCTATTCAACCAAGCTTTCAGCCGAGGCCTCCAAATCCAACG
TATTCTGGCTGGCAGCAAGAAGCAAGCCTAAATAAATTGAAAAAAGAATA
AAAACCGAACCACGTATGTAGCAGATGCCACTAGGGGTGAAGGAATGGGA
GGAAATAATTTAGTGGTTTCTAATTTTG

Search form

g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

Pages

Pages