g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002266
Unique Name	g.arboreum_cottongen_reftransV1_0002266
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0002266:1..528 . Chr9:95967023..95967736 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0B0N1U6_GOSAR (Callose synthase 5-like protein OS=Gossypium arboreum GN=F383_31553 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.663e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            IILKIVSMGRMKFSADFQLMFRLLKLLLFIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA
Sbjct:  723 IILKIVSMGRMKFSADFQLMFRLLKLLLFIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 864

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0D2URY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G120300 PE=4 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.244e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            IILKIVSMGRMKFSADFQLMFRLLKLLLFIGCIVTIAMLFYFLNLT+GDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA
Sbjct: 1781 IILKIVSMGRMKFSADFQLMFRLLKLLLFIGCIVTIAMLFYFLNLTVGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 1922

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0B0P9B7_GOSAR (Callose synthase 5 OS=Gossypium arboreum GN=F383_05976 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.408e-70
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            IILKIVSMGRMKFSADFQLMFRL+KL++F+G IVTIAMLFYFL+LTIGDIFQSILAF+PTGWALLQISQACRT+VKGIGMWGSVKALARGYEYMMGVLLFAPI ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK QA
Sbjct: 1742 IILKIVSMGRMKFSADFQLMFRLVKLVMFVGSIVTIAMLFYFLDLTIGDIFQSILAFVPTGWALLQISQACRTVVKGIGMWGSVKALARGYEYMMGVLLFAPITILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKMQA 1883

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0D2VLH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G119900 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.469e-70
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            IILKIVSMGRMKFSADFQLMFRL+KL++F+G IVTIAMLFYFL+LTIGDIFQSILAF+PTGWALLQISQACRT+VKGIGMWGSVKALARGYEYMMGVLLFAPI ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK QA
Sbjct: 1776 IILKIVSMGRMKFSADFQLMFRLVKLVMFVGSIVTIAMLFYFLDLTIGDIFQSILAFVPTGWALLQISQACRTVVKGIGMWGSVKALARGYEYMMGVLLFAPITILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKMQA 1917

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0B0PE32_GOSAR (Callose synthase 5 OS=Gossypium arboreum GN=F383_05976 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.732e-70
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            IILKIVSMGRMKFSADFQLMFRL+KL++F+G IVTIAMLFYFL+LTIGDIFQSILAF+PTGWALLQISQACRT+VKGIGMWGSVKALARGYEYMMGVLLFAPI ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK QA
Sbjct: 1712 IILKIVSMGRMKFSADFQLMFRLVKLVMFVGSIVTIAMLFYFLDLTIGDIFQSILAFVPTGWALLQISQACRTVVKGIGMWGSVKALARGYEYMMGVLLFAPITILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKMQA 1853

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A061DKG3_THECC (Callose synthase 5 OS=Theobroma cacao GN=TCM_001476 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 5.868e-67
Identity = 126/142 (88.73%), Postives = 136/142 (95.77%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQA 428
            ++LKIVSMGR KFSADFQLMFRLLKLLLF+G +V IAMLFYFL+LT+GDIFQS+LAFMPTGWALLQISQACR +VKGIGMWGSVKALARGYEYMMGV +FAP+AILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQA
Sbjct: 1808 VVLKIVSMGRKKFSADFQLMFRLLKLLLFVGSLVIIAMLFYFLDLTVGDIFQSLLAFMPTGWALLQISQACRPVVKGIGMWGSVKALARGYEYMMGVFIFAPVAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQA 1949

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A067F553_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0457371mg PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.217e-62
Identity = 108/141 (76.60%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            IILKIVS+GR KFSADFQLMFRLLKL+LF+   VT+ ++F FLNL +GD+ QS+LA++PTGWALLQI+QACR +VKG+GMWGSVKA+ARGYEY+MG+++F P+ +LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KKQ
Sbjct:  100 IILKIVSLGRKKFSADFQLMFRLLKLVLFLAFTVTLVLMFLFLNLKVGDLLQSLLAYLPTGWALLQIAQACRPIVKGLGMWGSVKAIARGYEYLMGLVIFVPVGVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKQ 240

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0A0LM93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302250 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.039e-61
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVSMGR KFSADFQL+FRLLKL LFIG +V + MLF  L+LT+GDIF SILAFMPTGWA+LQI+QACR ++K IGMWGSVKALARGYEY+MGV++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct:  919 VILKIVSMGRKKFSADFQLLFRLLKLFLFIGSVVVVTMLFMLLHLTVGDIFASILAFMPTGWAILQIAQACRPIMKAIGMWGSVKALARGYEYVMGVVIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1059

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: A0A0A0LJS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302170 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.074e-61
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            +ILKIVSMGR KFSADFQL+FRLLKL LFIG +V +AMLF  L+LT+GDIF SILAFMPTGWA+LQI+QACR + K +GMWGSVKALARGYEYMMGV++FAP+A+LAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG K +
Sbjct:  946 VILKIVSMGRKKFSADFQLLFRLLKLSLFIGSVVVVAMLFTLLHLTVGDIFASILAFMPTGWAILQIAQACRPITKAMGMWGSVKALARGYEYMMGVVIFAPVAMLAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKNK 1086

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Match: W9QGA8_9ROSA (Callose synthase 5 OS=Morus notabilis GN=L484_007872 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.873e-61
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            IILKIVSMGR KFSADFQLMFRLLKL LFIG IVT+ +LF  LNLT+GDIF S+LAFMPTGWALLQISQ+CR LVKG+G WGSVKAL RGYEY+MG+LLFAP++ILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAG KK 
Sbjct: 1771 IILKIVSMGRKKFSADFQLMFRLLKLFLFIGSIVTLGILFTVLNLTVGDIFASLLAFMPTGWALLQISQSCRPLVKGLGFWGSVKALGRGYEYVMGLLLFAPVSILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGGKKN 1911

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.773e-23
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3

Query:    3 IILKIVSMGRMKFSADXXXXXXXXXXXXXIGCIVTIAMLFYFLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGM-WGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSKKQ 425
            ++  ++   R K+SA   + +RL++ LL +  I+ I  L  F + +  DIF S+LAF+PTGW +L I+Q  R  +K   + W +V ++AR Y+ + G+L+  P+A L+W P     QTR+LFN+AFSRGL+I +I+ G K +
Sbjct: 1636 VLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGKKSK 1777

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.347e-22
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 3

Query:  126 FLNLTIGDIFQSILAFMPTGWALLQISQACRTLVKGIGMWGSVKALARGYEYMMGVLLFAPIAILAWFPFVSEFQTRLLFNQAFSRGLQIQRILAGSK 419
            F  LT+ D+  S+LAF+PTGW L+ I+Q  +  +    +W +V ++AR Y+   G+++ AP+A+L+W P     QTR+LFN+AFSRGLQI  ILAG K
Sbjct: 1669 FTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGKK 1766

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N1U6_GOSAR	1.663e-76	100.00	Callose synthase 5-like protein OS=Gossypium arbor...	[more]
A0A0D2URY4_GOSRA	1.244e-74	99.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P9B7_GOSAR	3.408e-70	92.96	Callose synthase 5 OS=Gossypium arboreum GN=F383_0...	[more]
A0A0D2VLH1_GOSRA	3.469e-70	92.96	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PE32_GOSAR	3.732e-70	92.96	Callose synthase 5 OS=Gossypium arboreum GN=F383_0...	[more]
A0A061DKG3_THECC	5.868e-67	88.73	Callose synthase 5 OS=Theobroma cacao GN=TCM_00147...	[more]
A0A067F553_CITSI	3.217e-62	76.60	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A0A0LM93_CUCSA	1.039e-61	80.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A0A0LJS7_CUCSA	2.074e-61	80.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
W9QGA8_9ROSA	4.873e-61	84.40	Callose synthase 5 OS=Morus notabilis GN=L484_0078...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002266 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
CALSC_ARATH	2.773e-23	39.44	Callose synthase 12 OS=Arabidopsis thaliana GN=CAL...	[more]
CALSB_ARATH	9.347e-22	46.94	Callose synthase 11 OS=Arabidopsis thaliana GN=CAL...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 1..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 48..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..47
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..109
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 110..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	TMHMM	TMhelix		coord: 88..110
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002266 ID=g.arboreum_cottongen_reftransV1_0002266; Name=g.arboreum_cottongen_reftransV1_0002266; organism=Gossypium arboreum; type=contig; length=528bp
TGATTATTTTGAAGATAGTGTCGATGGGGAGAATGAAGTTCAGTGCGGAT
TTCCAGTTGATGTTCAGACTTCTTAAGCTATTACTGTTTATTGGGTGTAT
AGTCACCATTGCAATGTTGTTTTATTTCCTTAATCTCACAATTGGAGATA
TCTTCCAGAGCATACTGGCCTTTATGCCGACAGGGTGGGCTCTTCTGCAG
ATATCACAAGCATGTCGAACACTGGTGAAGGGAATAGGAATGTGGGGGTC
AGTAAAGGCACTAGCAAGAGGGTATGAATACATGATGGGTGTGTTACTGT
TTGCACCAATAGCTATATTGGCATGGTTCCCCTTCGTCTCAGAATTCCAG
ACCAGGCTGCTATTCAACCAAGCTTTCAGCCGAGGCCTCCAAATCCAACG
TATTCTGGCTGGCAGCAAGAAGCAAGCCTAAATAAATTGAAAAAAGAATA
AAAACCGAACCACGTATGTAGCAGATGCCACTAGGGGTGAAGGAATGGGA
GGAAATAATTTAGTGGTTTCTAATTTTG

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g.arboreum_cottongen_reftransV1_0002266, g.arboreum_cottongen_reftransV1_0002266 (contig) Gossypium arboreum

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