g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: V4S3G0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010911mg PE=4 SV=1) HSP 1 Score: 402.905 bits (1034), Expect = 2.132e-124 Identity = 190/279 (68.10%), Postives = 229/279 (82.08%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGE L+FL+ IGI +DF N+PYER F+VQ E+ VNV+HLE LLNYSF DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT++LYNKYP ++P LTD+RSASVNN+CYALS+VK G HKHIL +SQ+LYK I TV+SF+ LSLE TFGWESE SFPK L D++ESL+GAIFVDSG NKE+VF+SIRPLLEPMIT ETM +QP +EL E CQK H+ ++K + +G +++T+EV ANG +FKHT DKE AKK+ASKE+LKSLK + Sbjct: 1114 GGENVGLIFLDRIGIKVDFVNVPYERQFQVQVERLVNVRHLELLLNYSFCDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFAMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 1392
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: F6GX12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00920 PE=4 SV=1) HSP 1 Score: 396.741 bits (1018), Expect = 3.607e-122 Identity = 191/277 (68.95%), Postives = 232/277 (83.75%), Query Frame = -3 Query: 382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212 GGE AAL+F+ W+GI +DF +PY+R F V ++ VNV +LES+LNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYL+T+HLY+KYPG++P LLTDLRSASVNN+CYA SAVKA H+HIL SSQ+L++ I TV +F +L +E TFGWESE SFPKVL DV+ESLAGAI VDS YNKE+VFQSIRPLLEP+IT ET+ + P +EL ELCQKEHYD+++ +VS ++G +S+TIEVEANG KHTST+ DK A KLASKE+LKSLK Sbjct: 1113 GGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIKRVVVS-QNGKASVTIEVEANGAKHKHTSTS-DKRTATKLASKEVLKSLK 1387
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A5BU06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043738 PE=4 SV=1) HSP 1 Score: 391.734 bits (1005), Expect = 8.536e-121 Identity = 189/277 (68.23%), Postives = 229/277 (82.67%), Query Frame = -3 Query: 382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212 GGE AAL+F+ W+GI +DF +PY+R F V ++ VNV +LES+LNYSF+DPS LVE+LTHGSYML EIP CYQRLEFLGD+VLDYL+T+HLY+KYPG++P LLTDLRSASVNN+CYA SAVKA H+HIL SSQ+L++ I TV F +L E TFGWESE SFPKVL DV+ESLAGAI VDS YNKE+VFQSIRPLLEP+IT ET+ + P +EL ELCQKEHY +++ +VS ++G +S+TIEVEANG KHTST+ DK A KLASKE+LKSLK Sbjct: 1014 GGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXELCQKEHYXIKRVVVS-QNGKASVTIEVEANGAKHKHTSTS-DKRTAXKLASKEVLKSLK 1288
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: M1BDS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016641 PE=4 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 2.380e-119 Identity = 182/277 (65.70%), Postives = 222/277 (80.14%), Query Frame = -3 Query: 382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212 GGE AAL F+ W+G+ IDF + P RHF + AEK +NV++LESLL+Y F DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDY++T HLY KYPG+TP L+TDLRSASVNN CYA SAVKAG HKHIL +SQ L + I TVE F++L L TFGWE+E +FPKVL DV+ESL GAIFVDSG+NK+ FQSIRPLLEP++T +T+ +QPV+EL ELC ++ Y +K +VS E+GV+ IT+EVEANG + K T + DK MAKK+ASK +LKSLK Sbjct: 822 GGEVAALSFMKWLGVDIDFVDAPLPRHFPMNAEKLINVRYLESLLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAQSAVKAGLHKHILHASQDLQRQILGTVEDFEKLDLLSTFGWEAETTFPKVLGDVIESLGGAIFVDSGFNKDTTFQSIRPLLEPLVTPQTVKLQPVRELSELCDQKGYIKKKDVVSRENGVAYITVEVEANGVIHKSTCSGRDKIMAKKVASKNVLKSLK 1098
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: W9S3W9_9ROSA (Endoribonuclease Dicer-2-like protein OS=Morus notabilis GN=L484_005585 PE=4 SV=1) HSP 1 Score: 387.111 bits (993), Expect = 1.844e-118 Identity = 186/311 (59.81%), Postives = 233/311 (74.92%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQ--------------------------------RLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGE A+ F+NW+GI +D PYE HF+VQ+++ +N++HLE LLNY+F+D S LVEALTHGSYML EIP CYQ RLEFLGD+VLDY+IT+H YN YPG++P LTD+RSASVNN+CYALSAVKAG KHIL +S +L+K+I T+ +F++LS E TFGWESE SFPKVL DV+ESLAGAIFVDSGY+KE+VFQSIRPLLEP+IT ET+ + P KEL ELCQK H+D++KP+ S E+GVSSITIEVEANG ++HTS DK++ KK+A KE+L++LK A Sbjct: 1115 GGEIPAVKFMNWLGIEVDLEFKPYETHFQVQSDRLLNIKHLEFLLNYTFRDRSLLVEALTHGSYMLPEIPRCYQFLLNYTFRDHSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVITMHFYNTYPGMSPEKLTDMRSASVNNDCYALSAVKAGLQKHILYTSHQLHKEIANTIINFEKLSSESTFGWESETSFPKVLGDVIESLAGAIFVDSGYDKELVFQSIRPLLEPLITPETVKLHPAKELNELCQKMHFDMKKPVKSRENGVSSITIEVEANGVTYRHTSNVSDKKIGKKVACKEVLEALKRA 1425
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2) HSP 1 Score: 359.377 bits (921), Expect = 1.474e-110 Identity = 178/279 (63.80%), Postives = 212/279 (75.99%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGE AAL+F+NW+GI +DF +R +QAEK VNV ++ESLLNYSF+D S LVEALTHGSYM+ EIP CYQRLEFLGDSVLDYLIT HLY+KYP ++P LLTD+RSASVNN CYAL AVKA HKHIL +S L+K I TV F++ SL+ TFGWES+ SFPKVL DV+ESLAGAIFVDSGYNKE+VF SI+PLL MIT ET+ + PV+EL ELCQK ++L K S T+EV+A F HT+ A DK+MAKKLA KE+L LK + Sbjct: 1112 GGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 2.612e-76 Identity = 135/277 (48.74%), Postives = 186/277 (67.15%), Query Frame = -3 Query: 385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212 GE AA L + +G+ I+F IP ER ++AE+F+NV+ LE +L Y F D L+EALTHGSY + CYQRLEFLGD++LD+L T + Y+KYP TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ + +E F + ++GWE+ PKVL DV+ES+AGAI++DS +KE+V++S++ LLEP+ T ET+ PVK L E C + + + +H DGVSS+ V+A + T + K +AKKLASK +LK L Sbjct: 1123 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2) HSP 1 Score: 252.677 bits (644), Expect = 1.428e-72 Identity = 135/278 (48.56%), Postives = 186/278 (66.91%), Query Frame = -3 Query: 385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETV-ESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212 GE AA L + +G+ I+F IP ER ++AE+F++V+ LE +L Y F D L+EALTHGSY + CYQRLEFLGD++LD+L T + Y+KYP TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ + + +SF S +GWE+ PKVL DV+ES+AGAI++DS +KE+V++S++ LLEP+ T ET+ PVK L E C + + + +H DGVSS+ V+A + T + K +AKKLASK +LK L Sbjct: 1094 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPS----YGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCK-LAKKLASKAVLKDL 1365
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 7.267e-50 Identity = 116/284 (40.85%), Postives = 169/284 (59.51%), Query Frame = -3 Query: 382 GGEAAALLFLNWIGI--TIDFRNIPYERHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212 GG+ AA + WIGI +D IP + +++ + +N L+ +L FQ+ LVEA+TH S + + CYQRLEF+GD+VLD+LIT HL+ Y + P LTDLR+A+VNN +A AVK H H+ S L I+E V+ QE L+ +FG K+ PKVL D++ES+AGAIF+DSGY+ +V++ +PLL PM+T ET+ + PV+EL E CQ++ L S ++ T+EV +G V + K+MA+KLA++ L LK Sbjct: 1497 GGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYK-ASRAGNIA--TVEVFVDG-VQIGVAQNPQKKMAQKLAARNALVVLK 1774
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.147e-48 Identity = 106/286 (37.06%), Postives = 160/286 (55.94%), Query Frame = -3 Query: 370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQA-----EKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212 GG AA FL+WIGI +DF N R + + + ++ LE L+ Y F+ L++A H S+ GCYQRLEFLGD+VL+Y+IT +LY+ YP I P +TDLRS +V N+ A +AV+ HKH+++ S L I + E + +LS E E + PK L D++ES GA+ +DSG+N V++ + LL+P++T M P++EL ELCQ ++L P DG + +EV K+ T+ + + A+K A++E L LK + Sbjct: 1172 GGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFS-QHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK-FEMYVKLSNSEKDLLE-EPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKNYGY 1454
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 6.059e-43 Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = -3 Query: 544 GGEAAALLFLNWIGITIDFRNIPYE-----RHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKE 1212 GG+ AA + WIGI ++ + P E ++ V K ++ LE L Y F++ LVEA+TH S + + CYQRLEF+GD+VLD+LIT HL+ Y + P LTDLR+A+VNN +A AVK H ++ S L K I+E V+ Q S + +FG K+ PKVL D++ES+AGAIF+DSG + ++ +PLL+PM+T ET+ + PV+EL E CQ++ Sbjct: 1517 GGKIAANHLMKWIGIHVE--DDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.113e-41 Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = -3 Query: 553 GGEAAALLFLNWIGITID-----FRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL-SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELC 1212 GG AAAL + W GI I + + + K +++ LE+ L Y+F L+EA+TH S + CYQRLEFLGDSVLD L+T HLY + + P LTDLRSA V+N +A + V+ H H+ S L + I E V S E E F + PKVL D+MES+AGA+F+D+ +N ++V++ PLL P+IT + + + P +EL ELC Sbjct: 1199 GGIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELC 1424
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 2.611e-40 Identity = 99/286 (34.62%), Postives = 149/286 (52.10%), Query Frame = -3 Query: 379 GEAAALLFLNWIGITIDFRN-------IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL--SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209 G A+ FL WIG+ +DF + I R+ + N++ LE+ L+Y F LV+A H SY GCYQRLEFLGD+VLDYL+T + + +P + P LTDLRS SVNN A AV + + S L+ E +E + S G PKVL D++ES GA+F+D G+N V+ + L+P+ L + + P+KEL ELCQ +D R+ + +DG ++ ++V NG ++T +K K A++ ++ +LK Sbjct: 1251 GFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRN--NLETLENQLDYKFLHKGLLVQAFIHPSYN-RHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLH----EVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 7.955e-40 Identity = 92/241 (38.17%), Postives = 140/241 (58.09%), Query Frame = -3 Query: 382 VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGC-YQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1101 V +ESLL Y F+D + + EALTHGS+ PG Y+RLE+LGD+VL +++ ++ Y + P LT LR+A+V+ A AV G H + + L I + +E ELS+ Y PKVL DV+ESL GAI+ DS +N+EIV+Q + L +P+I+LET+ PV EL+E CQK ++ + ++ ++T+EV +G++ + A KE+A+ A+K L LK Sbjct: 39 VAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE---ELSM-YPIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTRRGVK---IVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_DANRE (Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 2.036e-38 Identity = 116/314 (36.94%), Postives = 163/314 (51.91%), Query Frame = -3 Query: 379 GEAAALLFLNWIGITI----------------DFRNIPYERHFE-VQAEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209 GE AA LFL +G+ + + IP FE AE+ +N + ES +NY+F++ ++L++A TH SY I CYQRLEFLGD++LDYLIT HLY +P +LTDLRSA VNN +A AVK +HK+ S +L+ I + V+ FQ L G +SE PK + D+ ESLAGAI++DSG + E V+Q P++ P+I + V PV+EL E+ + E P DG +T+EV GK FK + +AK A++ L+SLK Sbjct: 1551 GERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1857 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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