g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001626
Unique Nameg.arboreum_cottongen_reftransV1_0001626
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1214
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold3086supercontigg.arboreum_cottongen_reftransV1_0001626:1..1214 .
scaffold3086:40516..41983 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: V4S3G0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010911mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 2.132e-124
Identity = 190/279 (68.10%), Postives = 229/279 (82.08%), Query Frame = -3
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE   L+FL+ IGI +DF N+PYER F+VQ E+ VNV+HLE LLNYSF DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT++LYNKYP ++P  LTD+RSASVNN+CYALS+VK G HKHIL +SQ+LYK I  TV+SF+ LSLE TFGWESE SFPK L D++ESL+GAIFVDSG NKE+VF+SIRPLLEPMIT ETM +QP +EL E CQK H+ ++K +    +G +++T+EV ANG +FKHT    DKE AKK+ASKE+LKSLK +
Sbjct: 1114 GGENVGLIFLDRIGIKVDFVNVPYERQFQVQVERLVNVRHLELLLNYSFCDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFAMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 1392          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: F6GX12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00920 PE=4 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 3.607e-122
Identity = 191/277 (68.95%), Postives = 232/277 (83.75%), Query Frame = -3
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE AAL+F+ W+GI +DF  +PY+R F V  ++ VNV +LES+LNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYL+T+HLY+KYPG++P LLTDLRSASVNN+CYA SAVKA  H+HIL SSQ+L++ I  TV +F +L +E TFGWESE SFPKVL DV+ESLAGAI VDS YNKE+VFQSIRPLLEP+IT ET+ + P +EL ELCQKEHYD+++ +VS ++G +S+TIEVEANG   KHTST+ DK  A KLASKE+LKSLK
Sbjct: 1113 GGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIKRVVVS-QNGKASVTIEVEANGAKHKHTSTS-DKRTATKLASKEVLKSLK 1387          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A5BU06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043738 PE=4 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 8.536e-121
Identity = 189/277 (68.23%), Postives = 229/277 (82.67%), Query Frame = -3
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE AAL+F+ W+GI +DF  +PY+R F V  ++ VNV +LES+LNYSF+DPS LVE+LTHGSYML EIP CYQRLEFLGD+VLDYL+T+HLY+KYPG++P LLTDLRSASVNN+CYA SAVKA  H+HIL SSQ+L++ I  TV  F +L  E TFGWESE SFPKVL DV+ESLAGAI VDS YNKE+VFQSIRPLLEP+IT ET+ + P +EL ELCQKEHY +++ +VS ++G +S+TIEVEANG   KHTST+ DK  A KLASKE+LKSLK
Sbjct: 1014 GGETAALIFMRWLGINVDFVKVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXELCQKEHYXIKRVVVS-QNGKASVTIEVEANGAKHKHTSTS-DKRTAXKLASKEVLKSLK 1288          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: M1BDS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016641 PE=4 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.380e-119
Identity = 182/277 (65.70%), Postives = 222/277 (80.14%), Query Frame = -3
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE AAL F+ W+G+ IDF + P  RHF + AEK +NV++LESLL+Y F DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDY++T HLY KYPG+TP L+TDLRSASVNN CYA SAVKAG HKHIL +SQ L + I  TVE F++L L  TFGWE+E +FPKVL DV+ESL GAIFVDSG+NK+  FQSIRPLLEP++T +T+ +QPV+EL ELC ++ Y  +K +VS E+GV+ IT+EVEANG + K T +  DK MAKK+ASK +LKSLK
Sbjct:  822 GGEVAALSFMKWLGVDIDFVDAPLPRHFPMNAEKLINVRYLESLLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAQSAVKAGLHKHILHASQDLQRQILGTVEDFEKLDLLSTFGWEAETTFPKVLGDVIESLGGAIFVDSGFNKDTTFQSIRPLLEPLVTPQTVKLQPVRELSELCDQKGYIKKKDVVSRENGVAYITVEVEANGVIHKSTCSGRDKIMAKKVASKNVLKSLK 1098          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: W9S3W9_9ROSA (Endoribonuclease Dicer-2-like protein OS=Morus notabilis GN=L484_005585 PE=4 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 1.844e-118
Identity = 186/311 (59.81%), Postives = 233/311 (74.92%), Query Frame = -3
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQ--------------------------------RLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE  A+ F+NW+GI +D    PYE HF+VQ+++ +N++HLE LLNY+F+D S LVEALTHGSYML EIP CYQ                                RLEFLGD+VLDY+IT+H YN YPG++P  LTD+RSASVNN+CYALSAVKAG  KHIL +S +L+K+I  T+ +F++LS E TFGWESE SFPKVL DV+ESLAGAIFVDSGY+KE+VFQSIRPLLEP+IT ET+ + P KEL ELCQK H+D++KP+ S E+GVSSITIEVEANG  ++HTS   DK++ KK+A KE+L++LK A
Sbjct: 1115 GGEIPAVKFMNWLGIEVDLEFKPYETHFQVQSDRLLNIKHLEFLLNYTFRDRSLLVEALTHGSYMLPEIPRCYQFLLNYTFRDHSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVITMHFYNTYPGMSPEKLTDMRSASVNNDCYALSAVKAGLQKHILYTSHQLHKEIANTIINFEKLSSESTFGWESETSFPKVLGDVIESLAGAIFVDSGYDKELVFQSIRPLLEPLITPETVKLHPAKELNELCQKMHFDMKKPVKSRENGVSSITIEVEANGVTYRHTSNVSDKKIGKKVACKEVLEALKRA 1425          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.474e-110
Identity = 178/279 (63.80%), Postives = 212/279 (75.99%), Query Frame = -3
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE AAL+F+NW+GI +DF     +R   +QAEK VNV ++ESLLNYSF+D S LVEALTHGSYM+ EIP CYQRLEFLGDSVLDYLIT HLY+KYP ++P LLTD+RSASVNN CYAL AVKA  HKHIL +S  L+K I  TV  F++ SL+ TFGWES+ SFPKVL DV+ESLAGAIFVDSGYNKE+VF SI+PLL  MIT ET+ + PV+EL ELCQK  ++L K          S T+EV+A    F HT+ A DK+MAKKLA KE+L  LK +
Sbjct: 1112 GGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.612e-76
Identity = 135/277 (48.74%), Postives = 186/277 (67.15%), Query Frame = -3
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F+NV+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   +E F +     ++GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1123 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.428e-72
Identity = 135/278 (48.56%), Postives = 186/278 (66.91%), Query Frame = -3
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETV-ESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F++V+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   + +SF   S    +GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1094 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPS----YGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCK-LAKKLASKAVLKDL 1365          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.267e-50
Identity = 116/284 (40.85%), Postives = 169/284 (59.51%), Query Frame = -3
Query:  382 GGEAAALLFLNWIGI--TIDFRNIPYERHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GG+ AA   + WIGI   +D   IP  + +++     + +N   L+ +L   FQ+   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H H+   S  L   I+E V+  QE  L+    +FG    K+ PKVL D++ES+AGAIF+DSGY+  +V++  +PLL PM+T ET+ + PV+EL E CQ++   L     S    ++  T+EV  +G V    +    K+MA+KLA++  L  LK
Sbjct: 1497 GGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYK-ASRAGNIA--TVEVFVDG-VQIGVAQNPQKKMAQKLAARNALVVLK 1774          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.147e-48
Identity = 106/286 (37.06%), Postives = 160/286 (55.94%), Query Frame = -3
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQA-----EKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GG  AA  FL+WIGI +DF N    R  +  +       + ++  LE L+ Y F+    L++A  H S+      GCYQRLEFLGD+VL+Y+IT +LY+ YP I P  +TDLRS +V N+  A +AV+   HKH+++ S  L   I +  E + +LS       E E + PK L D++ES  GA+ +DSG+N   V++ +  LL+P++T   M   P++EL ELCQ   ++L  P     DG   + +EV    K+   T+   + + A+K A++E L  LK   +
Sbjct: 1172 GGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFS-QHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK-FEMYVKLSNSEKDLLE-EPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKNYGY 1454          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.059e-43
Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = -3
Query:  544 GGEAAALLFLNWIGITIDFRNIPYE-----RHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKE 1212
            GG+ AA   + WIGI ++  + P E     ++  V     K ++   LE  L Y F++   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H ++   S  L K I+E V+  Q  S +    +FG    K+ PKVL D++ES+AGAIF+DSG +    ++  +PLL+PM+T ET+ + PV+EL E CQ++
Sbjct: 1517 GGKIAANHLMKWIGIHVE--DDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.113e-41
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = -3
Query:  553 GGEAAALLFLNWIGITID-----FRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL-SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELC 1212
            GG AAAL  + W GI I       + + +         K  +++ LE+ L Y+F     L+EA+TH S     +  CYQRLEFLGDSVLD L+T HLY  +  + P  LTDLRSA V+N  +A + V+   H H+   S  L + I E V S  E    E  F   +    PKVL D+MES+AGA+F+D+ +N ++V++   PLL P+IT + + + P +EL ELC
Sbjct: 1199 GGIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELC 1424          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.611e-40
Identity = 99/286 (34.62%), Postives = 149/286 (52.10%), Query Frame = -3
Query:  379 GEAAALLFLNWIGITIDFRN-------IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL--SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            G   A+ FL WIG+ +DF +       I   R+  +      N++ LE+ L+Y F     LV+A  H SY      GCYQRLEFLGD+VLDYL+T + +  +P + P  LTDLRS SVNN   A  AV     + +   S  L+    E +E +     S     G       PKVL D++ES  GA+F+D G+N   V+  +   L+P+  L  + + P+KEL ELCQ   +D R+   + +DG  ++ ++V  NG     ++T  +K    K A++ ++ +LK 
Sbjct: 1251 GFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRN--NLETLENQLDYKFLHKGLLVQAFIHPSYN-RHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLH----EVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.955e-40
Identity = 92/241 (38.17%), Postives = 140/241 (58.09%), Query Frame = -3
Query:  382 VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGC-YQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1101
            V  +ESLL Y F+D + + EALTHGS+     PG  Y+RLE+LGD+VL  +++  ++  Y  + P  LT LR+A+V+    A  AV  G H  +   +  L   I + +E   ELS+ Y          PKVL DV+ESL GAI+ DS +N+EIV+Q  + L +P+I+LET+   PV EL+E CQK    ++   +  ++   ++T+EV  +G++    + A  KE+A+  A+K  L  LK
Sbjct:   39 VAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE---ELSM-YPIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTRRGVK---IVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272          
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_DANRE (Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.036e-38
Identity = 116/314 (36.94%), Postives = 163/314 (51.91%), Query Frame = -3
Query:  379 GEAAALLFLNWIGITI----------------DFRNIPYERHFE-VQAEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            GE AA LFL  +G+ +                 +  IP    FE   AE+ +N       + ES +NY+F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1551 GERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1857          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4S3G0_9ROSI2.132e-12468.10Uncharacterized protein OS=Citrus clementina GN=CI... [more]
F6GX12_VITVI3.607e-12268.95Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BU06_VITVI8.536e-12168.23Putative uncharacterized protein OS=Vitis vinifera... [more]
M1BDS7_SOLTU2.380e-11965.70Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
W9S3W9_9ROSA1.844e-11859.81Endoribonuclease Dicer-2-like protein OS=Morus not... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DCL2_ARATH1.474e-11063.80Endoribonuclease Dicer homolog 2 OS=Arabidopsis th... [more]
DCL2A_ORYSJ2.612e-7648.74Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL2B_ORYSJ1.428e-7248.56Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL1_ORYSJ7.267e-5040.85Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
DCL4_ORYSJ1.147e-4837.06Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL1_ARATH6.059e-4342.06Endoribonuclease Dicer homolog 1 OS=Arabidopsis th... [more]
DCL3B_ORYSJ1.113e-4140.27Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]
DCL4_ARATH2.611e-4034.62Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
RTL3_ORYSJ7.955e-4038.17Ribonuclease 3-like protein 3 OS=Oryza sativa subs... [more]
DICER_DANRE2.036e-3836.94Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 44..199
e-value: 4.3E-38
score: 142.6
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 65..176
e-value: 6.0E-21
score: 74.9
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 28..195
e-value: 2.6E-42
score: 143.2
IPR000999Ribonuclease III domainPROSITEPS00517RNASE_3_1coord: 65..73
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 29..176
score: 33.522
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 28..122
coord: 156..196
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 203..267
e-value: 5.2E-6
score: 26.9
IPR014720Double-stranded RNA-binding domainGENE3D3.30.160.20coord: 202..268
e-value: 5.9E-5
score: 22.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 202..269
score: 9.392
NoneNo IPR availablePANTHERPTHR14950:SF19ENDORIBONUCLEASE DICER HOMOLOG 2coord: 1..268
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 1..268
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 158..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bp
CCATTAAGATAGAATAACAGTAGTGTTTAAAAGTGCAAGAACAAGATTTA
CAAAGATGAGCAAAAGACCTTATGATGTGTTCCAACCCAAATGGCAGATC
AATTAGTACCAAAAATGAACCAGCAACAACATTAAACAAAAAATTACCTG
CTCTCAACTTCTTGAAGCATTGCATGCAGCAACGAGTAAGATGCATTAAT
GGACACCGTTCTCATCACTAAAACAAGCTTTTTCAGATGCCAGAAAAAAT
GATGAAGATGCATTTTTCCTTTTCTTTTCTGATCAAGTAGTTTCTACTGA
GAAGAAGGCTGAATGTCTAAACCAAGCTCTTTGAGTAGCTAACATTGAGG
TCAACTGCAAAATCTAGCAAAAATTGGCTCCCTTTAGGGACTTCAAAATT
TCTTTGGAAGCCAGTTTCTTGGCCATCTCCTTATCACAAGCTGTGGATGT
GTGCTTGAATACCTTCCCATTTGCTTCAACCTCTATCGTAATAGAAGAAA
CGCCATCCTCATGTGAAACAATGGGTTTTCTTAGGTCATAATGCTCCTTT
TGACAGAGCTCATATAGCTCTTTGACAGGTTGAACCGTCATAGTCTCCAG
AGTAATCATGGGCTCCAACAGTGGCCTTATACTCTGGAATACGATTTCCT
TATTGTATCCTGAATCAACAAAAATAGCTCCAGCAAGTGACTCCATCACG
TCAGCAAGTACCTTGGGGAAAGATTTTTCAGATTCCCAGCCGAAAGTGTA
TTCCAATGATAATTCCTGAAAACTTTCGACGGTTTCTTTTATATCCTTGT
AAAGCTTCTGTGAACTTTGGAGAATGTGCTTATGAAATCCAGCCTTTACA
GCTGATAATGCATAGCAATTGTTGTTAACAGATGCTGACCTAAGATCCGT
TAATAATCTTGGCGTGATCCCAGGATATTTATTATATAAATGCAGAGTAA
TAAGATAATCTAAAACGGAGTCCCCTAGAAATTCCAGCCGCTGATAACAT
CCTGGAATTTCAGCAAGCATGTAAGAACCATGTGTTAGTGCTTCCACTAA
AAAAGAAGGGTCTTGAAATGAATAGTTAAGAAGAGACTCTAAATGTTGGA
CATTAACAAACTTTTCAGCCTGCACTTCGAAATGTCTTTCGTACGGTATA
TTTCTAAAATCAATAGTTATACCAATCCAATTCAAAAATAATAATGCAGC
AGCTTCACCTCCCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity