g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001626
Unique Nameg.arboreum_cottongen_reftransV1_0001626
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold3086supercontigg.arboreum_cottongen_reftransV1_0001626:1..1214 .
scaffold3086:40516..41983 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EXD1_THECC (Dicer-like protein isoform 1 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 3.911e-141
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct: 1133 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1411
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A067DSB6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0030622mg PE=4 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 6.562e-138
Identity = 192/279 (68.82%), Postives = 232/279 (83.15%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE   L+FL+ IGI +DF N+PYER F+VQAE+ VNV+HLESLLNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT++LYNKYP ++P  LTD+RSASVNN+CYALS+VK G HKHIL +SQ+LYK I  TV+SF+ LSLE TFGWESE SFPK L D++ESL+GAIFVDSG NKE+VF+SIRPLLEPMIT ETM +QP +EL E CQK H+ ++K +    +G +++T+EV ANG +FKHT    DKE AKK+ASKE+LKSLK +
Sbjct:   64 GGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 342
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: B9HHX6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07580g PE=4 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 1.689e-134
Identity = 202/281 (71.89%), Postives = 238/281 (84.70%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGE  ALLF++WIGI +DF N PYERH ++QAEKFVNV++LESLLNYSF DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLITLH+Y +YPG++P LLTDLRSASVNN+CYALSAVK G  +HIL +S  L+K I  TV+  QE SLE TFGWESE +FPKVL DV+ESLAGAI VDSGYNKE+VF+SIRPLLEP+IT ET+ +QPV+EL ELCQ++H+D +KPIVS     +S+TIEVEANG +FKHT+T  DK  AKKLASKE+LK+LK +NF
Sbjct: 1179 GGEVTALLFMDWIGIKVDFMNTPYERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRELNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKALKESNF 1459
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A067K507_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18057 PE=4 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.938e-132
Identity = 187/277 (67.51%), Postives = 231/277 (83.39%), Query Frame = -3 
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE A LLFL+WIGI  +F NIPY RHFEV+AE+ VNV +LESLLNY F+DPS LVEALTHGSYML E+P CYQRLEFLGDSVLDYLIT++LY +YPG++P LLTD+RSASVNN+CYA SAV+ G HK+I  +SQKL+KDI   VE+F  +S   TFGWESE SFPKVL DV+ESLAGAI+VDSGYNKE VF+SIRPLLEP+IT ET+ + PV+EL ELCQK +++  K +V  ++G+ S+T EV A+G++FKHTS A DK+ AK++ASKE+L++LK
Sbjct:  136 GGEIAGLLFLDWIGIKAEFDNIPYVRHFEVKAERLVNVSYLESLLNYQFRDPSLLVEALTHGSYMLPEVPRCYQRLEFLGDSVLDYLITVYLYKQYPGMSPGLLTDMRSASVNNDCYAQSAVRGGLHKYICHASQKLHKDIAIAVENFNNVSSAPTFGWESETSFPKVLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEKSKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALK 412
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: B9HYI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18870g PE=4 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 1.074e-131
Identity = 202/281 (71.89%), Postives = 235/281 (83.63%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGE  AL F++WIGI +DF  +PYERHF++QAEKFVNV++LESLLNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT+HLY +YPG++P LLTDLRSASVNN+CYA SAVK   HKHIL +SQ L+K I ET E FQ+ SL  TFGWESE SFPKVL DV+ESLAGAI VDSGYNKEIVFQSIRPLLEP+IT  T+ + P +EL ELCQK+H+D +K +VS+    +SITI V ANG  FKHT+TA DK+ AKKLASKE+LKSLK +NF
Sbjct: 1118 GGEVLALFFMDWIGIKVDFMIVPYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKEYPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGSTFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARELSELCQKQHFDYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKEVLKSLKESNF 1398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: B9RM41_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077610 PE=4 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.659e-131
Identity = 198/282 (70.21%), Postives = 236/282 (83.69%), Query Frame = -3 
Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGE A LLFL+WIGI  DF N+PYER FE+  EK+VN+ HLESLL YSF+DP  LVEALTHGSYML EIP CYQRLEFLGDSVLDYLIT+HLY KYPG++P LLTD+RSASVNN+CYA SAV+ G HK+IL +SQKL+KDI  TV + +E S E TFGWESE SFPKVL DV+ESLAGAIFVDSGYNKE+VF SIRPLLEP+IT ET+ + P +EL ELCQK+H+D RKP+VS  +G+S +T+EVEANG VFKHTS A +++ AK+LASKE+L++LK +  C
Sbjct: 1106 GGEIAGLLFLDWIGIKADFLNMPYERGFEMNPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITVHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCKEFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIRLHPTRELTELCQKQHFDRRKPVVSRNNGMSCVTVEVEANGVVFKHTSAAAERKTAKRLASKEVLRALKDSLAC 1387
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: M5W8C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000240mg PE=4 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 1.554e-129
Identity = 192/277 (69.31%), Postives = 239/277 (86.28%), Query Frame = -3 
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE AA+ F+NW+GI +D  +IPY RHF+VQ EK VNV+H+ESLLNYSF+DPS LVEALTHGSYML EIPGCYQRLEFLGD+VLD+LIT++LYNKYPG++P +LTD+RSASVNN+CYA SA+KAG HKHIL +S KL+KDI  T+E+F+ LS E TFGWESE SFPKVL DV+ESLAGAIFVDSGY+K+IVFQSI PL++P++T ETM + PV+EL E CQK HY+L+KP+ S ++ V+++TIEVEANG  +KH+STA +K+ A KLA KE+L+SLK
Sbjct: 1136 GGEIAAMYFMNWVGIKVDSVHIPYGRHFQVQPEKLVNVRHVESLLNYSFRDPSLLVEALTHGSYMLPEIPGCYQRLEFLGDAVLDHLITIYLYNKYPGMSPGILTDMRSASVNNDCYARSAIKAGLHKHILHASHKLHKDIVYTIENFERLSSESTFGWESETSFPKVLGDVIESLAGAIFVDSGYDKKIVFQSISPLIQPLVTPETMRLHPVRELNEHCQKMHYNLKKPVKSFQNNVATVTIEVEANGYTYKHSSTASNKKTALKLACKEVLRSLK 1412
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: M1BDS8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016641 PE=4 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 7.112e-127
Identity = 182/277 (65.70%), Postives = 222/277 (80.14%), Query Frame = -3 
Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GGE AAL F+ W+G+ IDF + P  RHF + AEK +NV++LESLL+Y F DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDY++T HLY KYPG+TP L+TDLRSASVNN CYA SAVKAG HKHIL +SQ L + I  TVE F++L L  TFGWE+E +FPKVL DV+ESL GAIFVDSG+NK+  FQSIRPLLEP++T +T+ +QPV+EL ELC ++ Y  +K +VS E+GV+ IT+EVEANG + K T +  DK MAKK+ASK +LKSLK
Sbjct:  130 GGEVAALSFMKWLGVDIDFVDAPLPRHFPMNAEKLINVRYLESLLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAQSAVKAGLHKHILHASQDLQRQILGTVEDFEKLDLLSTFGWEAETTFPKVLGDVIESLGGAIFVDSGFNKDTTFQSIRPLLEPLVTPQTVKLQPVRELSELCDQKGYIKKKDVVSRENGVAYITVEVEANGVIHKSTCSGRDKIMAKKVASKNVLKSLK 406
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A067DVW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000607mg PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.881e-125
Identity = 187/279 (67.03%), Postives = 231/279 (82.80%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE   L+FL+ IGI +DF N+PY+R F+V AE+ VNV+HLESLLNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT++LYNKYPG++P  LTD+RSASVNN+CYALS+VK G HKHIL +S +LYK I  TV+SF++LSL  TFGWES  SFPK L D++ESLAGAIFVDSG N+E+VFQSIRPLLEPMIT ETM   PV+EL E CQK H+ ++KP+ S   G +++T+EV+ANG++F+HT    DK+ AKK+A KE+LKSL+ +
Sbjct: 1114 GGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRAS 1392
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: V4UQW2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010912mg PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.881e-125
Identity = 187/279 (67.03%), Postives = 231/279 (82.80%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE   L+FL+ IGI +DF N+PY+R F+V AE+ VNV+HLESLLNYSF+DPS LVEALTHGSYML EIP CYQRLEFLGD+VLDYLIT++LYNKYPG++P  LTD+RSASVNN+CYALS+VK G HKHIL +S +LYK I  TV+SF++LSL  TFGWES  SFPK L D++ESLAGAIFVDSG N+E+VFQSIRPLLEPMIT ETM   PV+EL E CQK H+ ++KP+ S   G +++T+EV+ANG++F+HT    DK+ AKK+A KE+LKSL+ +
Sbjct: 1114 GGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRAS 1392
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.474e-110
Identity = 178/279 (63.80%), Postives = 212/279 (75.99%), Query Frame = -3 
Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGE AAL+F+NW+GI +DF     +R   +QAEK VNV ++ESLLNYSF+D S LVEALTHGSYM+ EIP CYQRLEFLGDSVLDYLIT HLY+KYP ++P LLTD+RSASVNN CYAL AVKA  HKHIL +S  L+K I  TV  F++ SL+ TFGWES+ SFPKVL DV+ESLAGAIFVDSGYNKE+VF SI+PLL  MIT ET+ + PV+EL ELCQK  ++L K          S T+EV+A    F HT+ A DK+MAKKLA KE+L  LK +
Sbjct: 1112 GGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSKA-----KDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.612e-76
Identity = 135/277 (48.74%), Postives = 186/277 (67.15%), Query Frame = -3 
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F+NV+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   +E F +     ++GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1123 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.428e-72
Identity = 135/278 (48.56%), Postives = 186/278 (66.91%), Query Frame = -3 
Query:  385 GGEAAALLFLNWIGITIDFRN-IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETV-ESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1212
             GE AA L +  +G+ I+F   IP ER   ++AE+F++V+ LE +L Y F D   L+EALTHGSY  +    CYQRLEFLGD++LD+L T + Y+KYP  TP LLTDLRSASVNNNCYA +AVK+G +KHIL SS +L++ +   + +SF   S    +GWE+    PKVL DV+ES+AGAI++DS  +KE+V++S++ LLEP+ T ET+   PVK L E C +  + +     +H DGVSS+   V+A    +  T +   K +AKKLASK +LK L
Sbjct: 1094 AGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPS----YGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYE-KNHVDGVSSVIARVKAGETTYSATKSGPCK-LAKKLASKAVLKDL 1365
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.267e-50
Identity = 116/284 (40.85%), Postives = 169/284 (59.51%), Query Frame = -3 
Query:  382 GGEAAALLFLNWIGI--TIDFRNIPYERHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GG+ AA   + WIGI   +D   IP  + +++     + +N   L+ +L   FQ+   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H H+   S  L   I+E V+  QE  L+    +FG    K+ PKVL D++ES+AGAIF+DSGY+  +V++  +PLL PM+T ET+ + PV+EL E CQ++   L     S    ++  T+EV  +G V    +    K+MA+KLA++  L  LK
Sbjct: 1497 GGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYK-ASRAGNIA--TVEVFVDG-VQIGVAQNPQKKMAQKLAARNALVVLK 1774
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.147e-48
Identity = 106/286 (37.06%), Postives = 160/286 (55.94%), Query Frame = -3 
Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQA-----EKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GG  AA  FL+WIGI +DF N    R  +  +       + ++  LE L+ Y F+    L++A  H S+      GCYQRLEFLGD+VL+Y+IT +LY+ YP I P  +TDLRS +V N+  A +AV+   HKH+++ S  L   I +  E + +LS       E E + PK L D++ES  GA+ +DSG+N   V++ +  LL+P++T   M   P++EL ELCQ   ++L  P     DG   + +EV    K+   T+   + + A+K A++E L  LK   +
Sbjct: 1172 GGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFS-QHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK-FEMYVKLSNSEKDLLE-EPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKNYGY 1454
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.059e-43
Identity = 98/233 (42.06%), Postives = 142/233 (60.94%), Query Frame = -3 
Query:  544 GGEAAALLFLNWIGITIDFRNIPYE-----RHFEVQAE--KFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLE---YTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKE 1212
            GG+ AA   + WIGI ++  + P E     ++  V     K ++   LE  L Y F++   LVEA+TH S   + +  CYQRLEF+GD+VLD+LIT HL+  Y  + P  LTDLR+A+VNN  +A  AVK   H ++   S  L K I+E V+  Q  S +    +FG    K+ PKVL D++ES+AGAIF+DSG +    ++  +PLL+PM+T ET+ + PV+EL E CQ++
Sbjct: 1517 GGKIAANHLMKWIGIHVE--DDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.113e-41
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = -3 
Query:  553 GGEAAALLFLNWIGITID-----FRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL-SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELC 1212
            GG AAAL  + W GI I       + + +         K  +++ LE+ L Y+F     L+EA+TH S     +  CYQRLEFLGDSVLD L+T HLY  +  + P  LTDLRSA V+N  +A + V+   H H+   S  L + I E V S  E    E  F   +    PKVL D+MES+AGA+F+D+ +N ++V++   PLL P+IT + + + P +EL ELC
Sbjct: 1199 GGIAAALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELC 1424
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.611e-40
Identity = 99/286 (34.62%), Postives = 149/286 (52.10%), Query Frame = -3 
Query:  379 GEAAALLFLNWIGITIDFRN-------IPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQEL--SLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            G   A+ FL WIG+ +DF +       I   R+  +      N++ LE+ L+Y F     LV+A  H SY      GCYQRLEFLGD+VLDYL+T + +  +P + P  LTDLRS SVNN   A  AV     + +   S  L+    E +E +     S     G       PKVL D++ES  GA+F+D G+N   V+  +   L+P+  L  + + P+KEL ELCQ   +D R+   + +DG  ++ ++V  NG     ++T  +K    K A++ ++ +LK 
Sbjct: 1251 GFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLTTRN--NLETLENQLDYKFLHKGLLVQAFIHPSYN-RHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLH----EVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKA 1528
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.955e-40
Identity = 92/241 (38.17%), Postives = 140/241 (58.09%), Query Frame = -3 
Query:  382 VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGC-YQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1101
            V  +ESLL Y F+D + + EALTHGS+     PG  Y+RLE+LGD+VL  +++  ++  Y  + P  LT LR+A+V+    A  AV  G H  +   +  L   I + +E   ELS+ Y          PKVL DV+ESL GAI+ DS +N+EIV+Q  + L +P+I+LET+   PV EL+E CQK    ++   +  ++   ++T+EV  +G++    + A  KE+A+  A+K  L  LK
Sbjct:   39 VAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE---ELSM-YPIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQKTRRGVK---IVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLK 272
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_DANRE (Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.036e-38
Identity = 116/314 (36.94%), Postives = 163/314 (51.91%), Query Frame = -3 
Query:  379 GEAAALLFLNWIGITI----------------DFRNIPYERHFE-VQAEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1209
            GE AA LFL  +G+ +                 +  IP    FE   AE+ +N       + ES +NY+F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1551 GERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1857
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061EXD1_THECC3.911e-14175.99Dicer-like protein isoform 1 OS=Theobroma cacao GN... [more]
A0A067DSB6_CITSI6.562e-13868.82Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
B9HHX6_POPTR1.689e-13471.89Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067K507_JATCU1.938e-13267.51Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HYI3_POPTR1.074e-13171.89Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9RM41_RICCO1.659e-13170.21ATP binding protein, putative OS=Ricinus communis ... [more]
M5W8C9_PRUPE1.554e-12969.31Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M1BDS8_SOLTU7.112e-12765.70Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A067DVW3_CITSI1.881e-12567.03Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4UQW2_9ROSI1.881e-12567.03Uncharacterized protein OS=Citrus clementina GN=CI... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DCL2_ARATH1.474e-11063.80Endoribonuclease Dicer homolog 2 OS=Arabidopsis th... [more]
DCL2A_ORYSJ2.612e-7648.74Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCL2B_ORYSJ1.428e-7248.56Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL1_ORYSJ7.267e-5040.85Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
DCL4_ORYSJ1.147e-4837.06Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
DCL1_ARATH6.059e-4342.06Endoribonuclease Dicer homolog 1 OS=Arabidopsis th... [more]
DCL3B_ORYSJ1.113e-4140.27Endoribonuclease Dicer homolog 3b OS=Oryza sativa ... [more]
DCL4_ARATH2.611e-4034.62Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
RTL3_ORYSJ7.955e-4038.17Ribonuclease 3-like protein 3 OS=Oryza sativa subs... [more]
DICER_DANRE2.036e-3836.94Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 44..199
e-value: 4.3E-38
score: 142.6
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 65..176
e-value: 6.0E-21
score: 74.9
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 28..195
e-value: 2.6E-42
score: 143.2
IPR000999Ribonuclease III domainPROSITEPS00517RNASE_3_1coord: 65..73
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 29..176
score: 33.522
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 28..122
coord: 156..196
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 203..267
e-value: 5.2E-6
score: 26.9
IPR014720Double-stranded RNA-binding domainGENE3D3.30.160.20coord: 202..268
e-value: 5.9E-5
score: 22.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 202..269
score: 9.392
NoneNo IPR availablePANTHERPTHR14950:SF19ENDORIBONUCLEASE DICER HOMOLOG 2coord: 1..268
NoneNo IPR availablePANTHERPTHR14950HELICASE-RELATEDcoord: 1..268
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 158..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bp
CCATTAAGATAGAATAACAGTAGTGTTTAAAAGTGCAAGAACAAGATTTA
CAAAGATGAGCAAAAGACCTTATGATGTGTTCCAACCCAAATGGCAGATC
AATTAGTACCAAAAATGAACCAGCAACAACATTAAACAAAAAATTACCTG
CTCTCAACTTCTTGAAGCATTGCATGCAGCAACGAGTAAGATGCATTAAT
GGACACCGTTCTCATCACTAAAACAAGCTTTTTCAGATGCCAGAAAAAAT
GATGAAGATGCATTTTTCCTTTTCTTTTCTGATCAAGTAGTTTCTACTGA
GAAGAAGGCTGAATGTCTAAACCAAGCTCTTTGAGTAGCTAACATTGAGG
TCAACTGCAAAATCTAGCAAAAATTGGCTCCCTTTAGGGACTTCAAAATT
TCTTTGGAAGCCAGTTTCTTGGCCATCTCCTTATCACAAGCTGTGGATGT
GTGCTTGAATACCTTCCCATTTGCTTCAACCTCTATCGTAATAGAAGAAA
CGCCATCCTCATGTGAAACAATGGGTTTTCTTAGGTCATAATGCTCCTTT
TGACAGAGCTCATATAGCTCTTTGACAGGTTGAACCGTCATAGTCTCCAG
AGTAATCATGGGCTCCAACAGTGGCCTTATACTCTGGAATACGATTTCCT
TATTGTATCCTGAATCAACAAAAATAGCTCCAGCAAGTGACTCCATCACG
TCAGCAAGTACCTTGGGGAAAGATTTTTCAGATTCCCAGCCGAAAGTGTA
TTCCAATGATAATTCCTGAAAACTTTCGACGGTTTCTTTTATATCCTTGT
AAAGCTTCTGTGAACTTTGGAGAATGTGCTTATGAAATCCAGCCTTTACA
GCTGATAATGCATAGCAATTGTTGTTAACAGATGCTGACCTAAGATCCGT
TAATAATCTTGGCGTGATCCCAGGATATTTATTATATAAATGCAGAGTAA
TAAGATAATCTAAAACGGAGTCCCCTAGAAATTCCAGCCGCTGATAACAT
CCTGGAATTTCAGCAAGCATGTAAGAACCATGTGTTAGTGCTTCCACTAA
AAAAGAAGGGTCTTGAAATGAATAGTTAAGAAGAGACTCTAAATGTTGGA
CATTAACAAACTTTTCAGCCTGCACTTCGAAATGTCTTTCGTACGGTATA
TTTCTAAAATCAATAGTTATACCAATCCAATTCAAAAATAATAATGCAGC
AGCTTCACCTCCCA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity