g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2U1D5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1) HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0 Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 Query: 370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212 GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF Sbjct: 795 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1075
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2SEW2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1) HSP 1 Score: 547.354 bits (1409), Expect = 1.800e-179 Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 Query: 370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212 GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF Sbjct: 1025 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1305
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2UZA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1) HSP 1 Score: 547.354 bits (1409), Expect = 1.155e-178 Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3 Query: 370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212 GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF Sbjct: 1114 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1394
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0PZJ0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1) HSP 1 Score: 531.946 bits (1369), Expect = 1.012e-173 Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3 Query: 367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC Sbjct: 1009 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1290
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0Q103_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1) HSP 1 Score: 531.946 bits (1369), Expect = 4.223e-173 Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3 Query: 367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC Sbjct: 1077 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1358
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2NN15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G143000 PE=4 SV=1) HSP 1 Score: 527.324 bits (1357), Expect = 4.809e-171 Identity = 254/282 (90.07%), Postives = 266/282 (94.33%), Query Frame = -3 Query: 367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212 GGE AALLF+NWIGITIDFRNIPYERHFEVQAEK VNVQHLESLLNYSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYNKYPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESFQELSL+ TFGWESEKSFPKVL DVMES+AGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH +GVSS+TIEVEANG+V KHTSTACDK+MAKKLASKEILKSLK ANFC Sbjct: 1112 GGEVAALLFMNWIGITIDFRNIPYERHFEVQAEKIVNVQHLESLLNYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNKYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFQELSLDCTFGWESEKSFPKVLGDVMESIAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHGNGVSSVTIEVEANGEVLKHTSTACDKKMAKKLASKEILKSLKLANFC 1393
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061F5E0_THECC (Dicer-like protein isoform 5 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1) HSP 1 Score: 448.358 bits (1152), Expect = 7.230e-144 Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K VF+SIRPLLEP+IT ET+ PVKEL ELCQKEH++ R VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK + Sbjct: 792 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1070
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EXD5_THECC (Dicer-like protein isoform 6 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1) HSP 1 Score: 447.973 bits (1151), Expect = 2.580e-143 Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K VF+SIRPLLEP+IT ET+ PVKEL ELCQKEH++ R VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK + Sbjct: 829 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1107
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EZA5_THECC (Dicer-like protein isoform 3 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1) HSP 1 Score: 447.973 bits (1151), Expect = 1.388e-142 Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K VF+SIRPLLEP+IT ET+ PVKEL ELCQKEH++ R VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK + Sbjct: 917 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1195
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EY61_THECC (Dicer-like protein isoform 2 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1) HSP 1 Score: 447.973 bits (1151), Expect = 1.012e-141 Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3 Query: 376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212 GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K VF+SIRPLLEP+IT ET+ PVKEL ELCQKEH++ R VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK + Sbjct: 1022 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1300
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL2_ARATH (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.053e-29 Identity = 86/248 (34.68%), Postives = 146/248 (58.87%), Query Frame = -3 Query: 385 NVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESF-QELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETM--TVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITI-----EVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1104 +++ +E +LNY F + S L EA+TH S + P Y+RLEF+GDS + I+ +LY YP + P L+ LR+A+V+ A ++ G + + +++ L + +KE E+ +E L ++G + PKVLAD+ ESLAGA++VD ++ + ++ R LLEP++TL+ + QPV L++LC K + R I + +DG SI + E+ A+G+ A +K++A+ +A+KE L+ L Sbjct: 59 SMEAVEKILNYKFSNKSLLKEAITHTS--CTDFPS-YERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVKA--PKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCHK--HKKRIDIKNWKDGNVSIAVIYLDDELLASGR-------AENKDIARLIAAKEALRKL 292
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 5.271e-27 Identity = 82/251 (32.67%), Postives = 131/251 (52.19%), Query Frame = -3 Query: 376 AEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKL---YKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1119 A++ +E LL Y F+D L EALTH S+ A+ YQRLEF+GDS L + LY P + P L+ LR+A+++ A AV+ + + ++ +L ETV+ E L S PKVLAD++E++A A++VD ++ E +++ R L EP+IT ET+ QPV L+ELCQK H + + + G++ + + V ++ K +AK A+++ + L GA Sbjct: 31 ADRAEAAARVERLLRYQFRDGRLLEEALTHQSF--ADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELCQK-HGKMAQFKTWQKGGMTVVNVFVAGE---LVGIGSSEQKVIAKLNAARDATRKLAGA 275
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ASPNC (Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dcl1 PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 4.534e-26 Identity = 76/204 (37.25%), Postives = 113/204 (55.39%), Query Frame = -3 Query: 592 IDFRNIP-YERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSY--MLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHI------LQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIV---FQS-IRPLLEPMITLET 1164 I F IP Y+R AE +++ + +E L+Y F+ P+ L A TH SY A++P CYQRLEFLGDS++D + L+ ++P P+ LT+ + A V+N AVK G H H+ LQS Y + +T E E +++Y W K PK L D++E+ GA+FVDS +N E++ F+ I+P E M +T Sbjct: 1222 ISFYTIPKYQRRAADGAELYLS-RKIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVP-CYQRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAVDY---WTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDT 1420
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_ASPCL (Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl1 PE=3 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 1.029e-23 Identity = 86/257 (33.46%), Postives = 127/257 (49.42%), Query Frame = -3 Query: 379 HLESLLNYSFQDPSFLVEALTHGSYMLA---EIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHI------LQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIV---FQS-IRPLLEPMITLETMTVQ-PVKELYELCQKE----HYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1095 +E L Y F+ P L A+TH S +P CYQRLEFLGDS+LD + L++++P P+ LT+ + A V+N AVK GFHKHI LQ+ Y + ET E+ E +++Y W K PK L D++E+ GAIFVDS ++ E++ FQ+ I+P + M +T + P L+ E +Y L+ + DG+ + + +TA AK AS+ L L G Sbjct: 1252 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVP-CYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGAVDY---WVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANKHPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYAKIRASERALVVLDG 1504
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL1_COCIM (Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1 PE=3 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 2.147e-23 Identity = 72/206 (34.95%), Postives = 103/206 (50.00%), Query Frame = -3 Query: 583 LNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSY--MLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEY---TFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV 1185 LNW + +IP + V A + ++ L Y F+ P L A TH SY A +P CYQRLEFLGD++LD H+Y+K+P P+ LT+ + A V+N AV+ G H H+ S L I VE + LE W PK L D++E+ GAIF+DSG++ E+V + + L+ E MT+ Sbjct: 1196 LNWEQYS-RLYSIPKYQTAVVDAAELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVP-CYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKH--FEDMTI 1397 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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