g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001626
Unique Name	g.arboreum_cottongen_reftransV1_0001626
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1214

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold3086	supercontig	g.arboreum_cottongen_reftransV1_0001626:1..1214 . scaffold3086:40516..41983 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2U1D5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3

Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct:  795 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1075

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2SEW2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.354 bits (1409), Expect = 1.800e-179
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3

Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct: 1025 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1305

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2UZA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G374900 PE=4 SV=1)

HSP 1 Score: 547.354 bits (1409), Expect = 1.155e-178
Identity = 263/281 (93.59%), Postives = 272/281 (96.80%), Query Frame = -3

Query:  370 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GGEAA LLFL+WIGI+IDF NIPYERHF+V+AEKFVNVQH ESLL+YSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITP LLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVL DVMESLAGAIFVDSGY KEIVFQSIRPLLEPMIT ETMTV PVKELYELCQKEHY+LRKPIVSHEDG+SSITIEVEANGKVFKHTSTACDK+MAKKLASKE+LKSLKGANF
Sbjct: 1114 GGEAAGLLFLDWIGISIDFTNIPYERHFKVRAEKFVNVQHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPGLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLGDVMESLAGAIFVDSGYKKEIVFQSIRPLLEPMITPETMTVHPVKELYELCQKEHYELRKPIVSHEDGISSITIEVEANGKVFKHTSTACDKKMAKKLASKEVLKSLKGANF 1394

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0PZJ0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1)

HSP 1 Score: 531.946 bits (1369), Expect = 1.012e-173
Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3

Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC
Sbjct: 1009 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1290

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0B0Q103_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12835 PE=4 SV=1)

HSP 1 Score: 531.946 bits (1369), Expect = 4.223e-173
Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = -3

Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYN YPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESF+ELSL+ TFGWESEKSFPKVL DVMESLAGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH++GVSS+TIEVEANG+V KHTSTA D++MAKKLASKEILKSLKGANFC
Sbjct: 1077 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNNYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFRELSLDCTFGWESEKSFPKVLGDVMESLAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHDNGVSSVTIEVEANGEVLKHTSTASDRKMAKKLASKEILKSLKGANFC 1358

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A0D2NN15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G143000 PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 4.809e-171
Identity = 254/282 (90.07%), Postives = 266/282 (94.33%), Query Frame = -3

Query:  367 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANFC 1212
            GGE AALLF+NWIGITIDFRNIPYERHFEVQAEK VNVQHLESLLNYSFQDPS LVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT HLYNKYPGI+P LLTDLRSASVNNNCYALSAVKAG HKHILQSSQKLYK IKETVESFQELSL+ TFGWESEKSFPKVL DVMES+AGAIFVDSGYNKE VF+SIRPLLEP+ITLETMTV PVKEL ELCQK+HY+ RKPIVSH +GVSS+TIEVEANG+V KHTSTACDK+MAKKLASKEILKSLK ANFC
Sbjct: 1112 GGEVAALLFMNWIGITIDFRNIPYERHFEVQAEKIVNVQHLESLLNYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITRHLYNKYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFQELSLDCTFGWESEKSFPKVLGDVMESIAGAIFVDSGYNKETVFRSIRPLLEPLITLETMTVHPVKELNELCQKKHYEQRKPIVSHGNGVSSVTIEVEANGEVLKHTSTACDKKMAKKLASKEILKSLKLANFC 1393

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061F5E0_THECC (Dicer-like protein isoform 5 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 7.230e-144
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3

Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  792 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1070

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EXD5_THECC (Dicer-like protein isoform 6 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 2.580e-143
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3

Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  829 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1107

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EZA5_THECC (Dicer-like protein isoform 3 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.388e-142
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3

Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct:  917 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1195

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Match: A0A061EY61_THECC (Dicer-like protein isoform 2 OS=Theobroma cacao GN=TCM_025106 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.012e-141
Identity = 212/279 (75.99%), Postives = 248/279 (88.89%), Query Frame = -3

Query:  376 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGA 1212
            GGEAA +LFLNWIGI +DF NIPY+R F+V AEK VNV+ LESLLNYSFQDPS LVEALTHGSYMLAEIP CYQR+EFLGDSVLDYLIT+HLY+KYP ++P LLTDLRSASVNN+CYALSAVKAG HK+IL +SQKL+K+I ETVESF+ELS++YTFGWE +KSFPKVLAD++ESLAGAIFVDSGY+K  VF+SIRPLLEP+IT ET+   PVKEL ELCQKEH++ R   VSH++GV+SIT EVEANG VFKHTS+A +K+MA+KLA KE+LKSLK +
Sbjct: 1022 GGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKAS 1300

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_CHICK (Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 7.329e-38
Identity = 105/267 (39.33%), Postives = 148/267 (55.43%), Query Frame = -3

Query:  379 AEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1119
            AEK +N      ++ E  +NYSF++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ    E   G +SE                PK + D+ ESLAGAI++DSG + E+V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1654 AEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQMEKNEMQ-GMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1913

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_CRIGR (Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.755e-37
Identity = 104/267 (38.95%), Postives = 147/267 (55.06%), Query Frame = -3

Query:  379 AEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1119
            AEK +N      ++ E  +NY F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E+V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1650 AEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1909

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_XENTR (Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.774e-37
Identity = 108/286 (37.76%), Postives = 153/286 (53.50%), Query Frame = -3

Query:  379 GITIDFRNIPYERHFE-VQAEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1173
            GI   +  IP    FE   AEK ++      ++ E  +NY F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+    P+++P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1607 GIDYGYLKIPPRCMFEHPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1885

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_MOUSE (Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 3.906e-37
Identity = 104/267 (38.95%), Postives = 147/267 (55.06%), Query Frame = -3

Query:  379 AEKFVN-----VQHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1119
            AEK +N      +  E  +NY F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E+V+Q   P+++P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1649 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1908

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_HUMAN (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 7.044e-37
Identity = 100/255 (39.22%), Postives = 141/255 (55.29%), Query Frame = -3

Query:  379 QHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1098
            ++ E  +NY F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+Q   P++ P+I   +  V   PV+EL E+ + E      P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1667 ENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM-EPETAKF-SPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1914

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DICER_BOVIN (Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 8.703e-37
Identity = 99/255 (38.82%), Postives = 140/255 (54.90%), Query Frame = -3

Query:  379 QHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESE-------------KSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKG 1098
            ++ E  +NY F++ ++L++A TH SY    I  CYQRLEFLGD++LDYLIT HLY      +P +LTDLRSA VNN  +A  AVK  +HK+    S +L+  I + V+ FQ L      G +SE                PK + D+ ESLAGAI++DSG + E V+Q   P++ P+I   +  V   PV+EL E+  +       P     DG   +T+EV   GK FK    +    +AK  A++  L+SLK 
Sbjct: 1668 ENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ-FQ-LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM--EPEITKFSPAERTYDGKVRVTVEVVGKGK-FKGVGRS--YRIAKSAAARRALRSLKA 1915

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.566e-36
Identity = 105/288 (36.46%), Postives = 147/288 (51.04%), Query Frame = -3

Query:  382 GGEAAALLFLNWIGITIDFRNIPYERHFEVQAEKFVNVQ----------HLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYT-FGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1212
            GG  AA+  L W+GI  +      E    VQA    +VQ           LE+ L YSF     LVEALTH S        CY+RLEFLGD+VLD L+T +L+N +       LTDLRSASVNN  +A  AVK  FH  +  SS  L   I E V   +  S++      +     PKVL D++ES+AGAI +D+  + ++V+    PLL P++T E + + P +EL E C K  Y +        D V + T++V+    +      +  ++ AK  AS  +LK L+
Sbjct: 1199 GGLRAAMAVLKWLGIGAEI-----EEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGDTVVA-TLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLE 1480

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCL3_ARATH (Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.722e-35
Identity = 98/292 (33.56%), Postives = 152/292 (52.05%), Query Frame = -3

Query:  370 GGEAAALLFLNWIGITIDFR-NIPYERHFEVQAEKFVNVQ----HLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWESEKSF-----PKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTVQPVKELYELCQKEHYDLRKPIVSHEDGV-SSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLKGANF 1212
            GG +A+L  + W+GI +DF  N+  E    V    ++  +     LE  + + F     L EA+TH S   +     Y+RLEFLGDSVLD+LIT HL+N Y    P  +TDLRSA VNN  +A  AVK   H H+ + +  L   I + + SFQ+         E+ +S      PK L DV+ES+AGA+ +D+  + + V++   PLL P++T + + + P +EL ELC    Y  R  +    DGV +  TI+++ +  +     +    ++A   A+  +L  L+  N 
Sbjct: 1156 GGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLLKEAITHSSLRESY---SYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPD-------ETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFR--VKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNI 1435

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCR1_CAEEL (Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.065e-33
Identity = 92/255 (36.08%), Postives = 134/255 (52.55%), Query Frame = -3

Query:  385 HLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQELSLEYTFGWE---------------SEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITL--ETMTVQPVKELYELCQ-KEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSL 1095
             LE  + Y F++ ++LV+A TH SY+   + GCYQRLEFLGD+VLDY+IT +L+      +P +LTDLRSA VNN  +A  AVK  F KH +     LY  I++ V+   E + +  F  E                +   PK + D+ ES+AGAI++DSG N +  +Q I  ++   I L        P++EL E  Q K  +   + I+  E G   +T+EV  N    + T    +  +AK  A+K  LK L
Sbjct: 1645 QLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEFEQSKVRFSKMERIL--ESGKVRVTVEVVNN---MRFTGMGRNYRIAKATAAKRALKYL 1894

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Match: DCR1_DROME (Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.772e-31
Identity = 109/330 (33.03%), Postives = 148/330 (44.85%), Query Frame = -3

Query:  382 GEAAALLFLNWIGITIDFRNIPYERHFE-------------VQAEKFVNV-----------------------------QHLESLLNYSFQDPSFLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVESFQE----------LSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLETMTV--QPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKLASKEILKSLK 1209
            G   ALLF+ W+G+    R +P  R  +               AE  V V                             +  E  L Y F+D S+L++A+TH SY    +  CYQRLEFLGD+VLDYLIT HLY      +P  LTDLRSA VNN  +A  AV+ GFHK     S  L   I   V   QE          L  E       +   PK L DV ES+AGAIF+DS  + ++V+     ++ P I   + +V   P++EL EL + E     KP    +     +T++V   G  F+      +  +AK  A+K  L+ LK
Sbjct: 1919 GPRGALLFMAWLGV----RVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLEL-EPETAKFGKPEKLADGRRVRVTVDVFCKG-TFRGIGR--NYRIAKCTAAKCALRQLK 2240

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2U1D5_GOSRA	0.000e+0	93.59	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SEW2_GOSRA	1.800e-179	93.59	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UZA8_GOSRA	1.155e-178	93.59	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PZJ0_GOSAR	1.012e-173	90.78	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0B0Q103_GOSAR	4.223e-173	90.78	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2NN15_GOSRA	4.809e-171	90.07	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061F5E0_THECC	7.230e-144	75.99	Dicer-like protein isoform 5 OS=Theobroma cacao GN...	[more]
A0A061EXD5_THECC	2.580e-143	75.99	Dicer-like protein isoform 6 OS=Theobroma cacao GN...	[more]
A0A061EZA5_THECC	1.388e-142	75.99	Dicer-like protein isoform 3 OS=Theobroma cacao GN...	[more]
A0A061EY61_THECC	1.012e-141	75.99	Dicer-like protein isoform 2 OS=Theobroma cacao GN...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001626 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
DICER_CHICK	7.329e-38	39.33	Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 ...	[more]
DICER_CRIGR	1.755e-37	38.95	Endoribonuclease Dicer OS=Cricetulus griseus GN=DI...	[more]
DICER_XENTR	3.774e-37	37.76	Endoribonuclease Dicer OS=Xenopus tropicalis GN=di...	[more]
DICER_MOUSE	3.906e-37	38.95	Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 P...	[more]
DICER_HUMAN	7.044e-37	39.22	Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 P...	[more]
DICER_BOVIN	8.703e-37	38.82	Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=...	[more]
DCL3A_ORYSJ	2.566e-36	36.46	Endoribonuclease Dicer homolog 3a OS=Oryza sativa ...	[more]
DCL3_ARATH	1.722e-35	33.56	Endoribonuclease Dicer homolog 3 OS=Arabidopsis th...	[more]
DCR1_CAEEL	1.065e-33	36.08	Endoribonuclease dcr-1 OS=Caenorhabditis elegans G...	[more]
DCR1_DROME	2.772e-31	33.03	Endoribonuclease Dcr-1 OS=Drosophila melanogaster ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 44..199 e-value: 4.3E-38 score: 142.6
IPR000999	Ribonuclease III domain	PFAM	PF00636	Ribonuclease_3	coord: 65..176 e-value: 6.0E-21 score: 74.9
IPR000999	Ribonuclease III domain	GENE3D	1.10.1520.10		coord: 28..195 e-value: 2.6E-42 score: 143.2
IPR000999	Ribonuclease III domain	PROSITE	PS00517	RNASE_3_1	coord: 65..73
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 29..176 score: 33.522
IPR000999	Ribonuclease III domain	SUPERFAMILY	69065	RNase III domain-like	coord: 28..122 coord: 156..196
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 203..267 e-value: 5.2E-6 score: 26.9
IPR014720	Double-stranded RNA-binding domain	GENE3D	3.30.160.20		coord: 202..268 e-value: 5.9E-5 score: 22.7
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 202..269 score: 9.392
None	No IPR available	PANTHER	PTHR14950:SF19	ENDORIBONUCLEASE DICER HOMOLOG 2	coord: 1..268
None	No IPR available	PANTHER	PTHR14950	HELICASE-RELATED	coord: 1..268
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 158..267

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001626 ID=g.arboreum_cottongen_reftransV1_0001626; Name=g.arboreum_cottongen_reftransV1_0001626; organism=Gossypium arboreum; type=contig; length=1214bp
CCATTAAGATAGAATAACAGTAGTGTTTAAAAGTGCAAGAACAAGATTTA
CAAAGATGAGCAAAAGACCTTATGATGTGTTCCAACCCAAATGGCAGATC
AATTAGTACCAAAAATGAACCAGCAACAACATTAAACAAAAAATTACCTG
CTCTCAACTTCTTGAAGCATTGCATGCAGCAACGAGTAAGATGCATTAAT
GGACACCGTTCTCATCACTAAAACAAGCTTTTTCAGATGCCAGAAAAAAT
GATGAAGATGCATTTTTCCTTTTCTTTTCTGATCAAGTAGTTTCTACTGA
GAAGAAGGCTGAATGTCTAAACCAAGCTCTTTGAGTAGCTAACATTGAGG
TCAACTGCAAAATCTAGCAAAAATTGGCTCCCTTTAGGGACTTCAAAATT
TCTTTGGAAGCCAGTTTCTTGGCCATCTCCTTATCACAAGCTGTGGATGT
GTGCTTGAATACCTTCCCATTTGCTTCAACCTCTATCGTAATAGAAGAAA
CGCCATCCTCATGTGAAACAATGGGTTTTCTTAGGTCATAATGCTCCTTT
TGACAGAGCTCATATAGCTCTTTGACAGGTTGAACCGTCATAGTCTCCAG
AGTAATCATGGGCTCCAACAGTGGCCTTATACTCTGGAATACGATTTCCT
TATTGTATCCTGAATCAACAAAAATAGCTCCAGCAAGTGACTCCATCACG
TCAGCAAGTACCTTGGGGAAAGATTTTTCAGATTCCCAGCCGAAAGTGTA
TTCCAATGATAATTCCTGAAAACTTTCGACGGTTTCTTTTATATCCTTGT
AAAGCTTCTGTGAACTTTGGAGAATGTGCTTATGAAATCCAGCCTTTACA
GCTGATAATGCATAGCAATTGTTGTTAACAGATGCTGACCTAAGATCCGT
TAATAATCTTGGCGTGATCCCAGGATATTTATTATATAAATGCAGAGTAA
TAAGATAATCTAAAACGGAGTCCCCTAGAAATTCCAGCCGCTGATAACAT
CCTGGAATTTCAGCAAGCATGTAAGAACCATGTGTTAGTGCTTCCACTAA
AAAAGAAGGGTCTTGAAATGAATAGTTAAGAAGAGACTCTAAATGTTGGA
CATTAACAAACTTTTCAGCCTGCACTTCGAAATGTCTTTCGTACGGTATA
TTTCTAAAATCAATAGTTATACCAATCCAATTCAAAAATAATAATGCAGC
AGCTTCACCTCCCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000999	RNase_III_dom
IPR014720	dsRBD_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0004525	ribonuclease III activity

Search form

g.arboreum_cottongen_reftransV1_0001626, g.arboreum_cottongen_reftransV1_0001626 (contig) Gossypium arboreum

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