g.arboreum_cottongen_reftransV1_0011422, g.arboreum_cottongen_reftransV1_0011422 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011422
Unique Nameg.arboreum_cottongen_reftransV1_0011422
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2033
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Match: A0A067E0X5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018202mg PE=4 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.145e-98
Identity = 151/203 (74.38%), Postives = 172/203 (84.73%), Query Frame = 2 
Query:   20 LRARQQYMISQVSLLYPVKILVGPAQEQELESYPSSSRLGNSSVSKPINCGTLTILGLHLTMRPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELLRCVQSSEFIDT 628
            LR RQQ+MISQVS LYPVKILVGP QEQELES+PS +R GNS+ SKP+N G+LTILGLHLT+ PFTKMS FTDKKEVQ+SATALGY+AH VSLIASYL+VPLRYPLRLGGS +Y+ND  P   PT+ D S    LS   KP EFPLFL+GQD TRAAYA+FLL+KDIEQLLN+IG  SLGPRH++ANLKELLR +QS E+IDT
Sbjct:    2 LRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTS-DLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 203
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Match: V4U4V4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005271mg PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 3.217e-98
Identity = 150/203 (73.89%), Postives = 172/203 (84.73%), Query Frame = 2 
Query:   20 LRARQQYMISQVSLLYPVKILVGPAQEQELESYPSSSRLGNSSVSKPINCGTLTILGLHLTMRPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELLRCVQSSEFIDT 628
            LR RQQ+MISQVS LYPVKILVGP QEQELES+PS +R GNS+ SKP+N G+LTILGLHLT+ PFTKMS FTDKKEVQ+SATA+GY+AH VSLIASYL+VPLRYPLRLGGS +Y+ND  P   PT+ D S    LS   KP EFPLFL+GQD TRAAYA+FLL+KDIEQLLN+IG  SLGPRH++ANLKELLR +QS E+IDT
Sbjct:    2 LRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATAMGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTS-DLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 203
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Match: A0A067KT16_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01113 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 2.374e-96
Identity = 149/209 (71.29%), Postives = 180/209 (86.12%), Query Frame = 2 
Query:    2 KNMQRKLRARQQYMISQVSLLYPVKILVGPAQEQELESYPSSSRLGNSSVSKPINCGTLTILGLHLTMRPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELLRCVQSSEFIDT 628
            +N+Q+KLR RQ+ MISQV+LLYPVKI  GP++EQELES+PS+SR GN + SKP+N G+LTILGLHL+M PFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYL+VPLRYP+RLGGS SY+ND  P   P++ D    +  +A  K VEFPLFL+GQDTTRAAYA+FLL+KD+EQLLN+IG  SLGPRH++ANLKEL R +QS+EF++T
Sbjct:  147 RNLQKKLRLRQRNMISQVALLYPVKISAGPSEEQELESFPSTSRSGNYTGSKPVNQGSLTILGLHLSMLPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLKVPLRYPVRLGGSRSYINDYAPSTEPSSSDLLTSSSSNANPKSVEFPLFLEGQDTTRAAYAVFLLNKDLEQLLNYIGVKSLGPRHVLANLKELTRVIQSAEFLET 355
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Match: A0A067E1Y5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018202mg PE=4 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 5.914e-96
Identity = 150/203 (73.89%), Postives = 170/203 (83.74%), Query Frame = 2 
Query:   20 LRARQQYMISQVSLLYPVKILVGPAQEQELESYPSSSRLGNSSVSKPINCGTLTILGLHLTMRPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELLRCVQSSEFIDT 628
            LR RQQ+MISQVS LYPVKILVGP QEQELES+PS    GNS+ SKP+N G+LTILGLHLT+ PFTKMS FTDKKEVQ+SATALGY+AH VSLIASYL+VPLRYPLRLGGS +Y+ND  P   PT+ D S    LS   KP EFPLFL+GQD TRAAYA+FLL+KDIEQLLN+IG  SLGPRH++ANLKELLR +QS E+IDT
Sbjct:    2 LRMRQQFMISQVSFLYPVKILVGPKQEQELESFPS----GNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTS-DLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 199
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Match: U5FKV1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08370g PE=4 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.817e-91
Identity = 149/207 (71.98%), Postives = 177/207 (85.51%), Query Frame = 2 
Query:    8 MQRKLRARQQYMISQVSLLYPVKILVGPAQEQELESYPSSSRLGNSSVSKPINCGTLTILGLHLTMRPFTKMSFFTDKKEVQKSATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELLRCVQSSEFIDT 628
            +Q+KLR RQQ+MISQVSLLYP+KI  GP++EQELES+PSSS+ GN   SKP+N G+LTILGLHLTM PFTKMSFFTDKKEVQ+SA+ALG+VAHAVSLIASYL+VPLRY LRLGGS SY+ D  P    + L  S  T L+A  KPVEFPLFL+GQDTTRAAYA+FLL+KD+EQLLN+IG  SLGPRH++ANLKEL R +QS+EF+D+
Sbjct:  152 LQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSSSKSGNYVGSKPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRYSLRLGGSNSYIIDCAPSVESSDLLSS--TLLTANTKPVEFPLFLEGQDTTRAAYAVFLLNKDLEQLLNYIGVRSLGPRHVLANLKELTRTIQSAEFLDS 356
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy Swiss-Prot
Match: HUA2_ARATH (ENHANCER OF AG-4 protein 2 OS=Arabidopsis thaliana GN=HUA2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.124e-22
Identity = 95/223 (42.60%), Postives = 132/223 (59.19%), Query Frame = -2 
Query:  953 NGNQIVQMAGNTAHGGHIDASVKSELFPQQSPCFVP-GVCNSREPSGYVSSRQLDYGHNEMYLNAXXXXXXXXXXPGNAAFVQRPLAPSLPQTSSSHFSFTKPS-MXXXXXXXXXXXXSLPSQHDGRRPFVSDEQWRMPA---------GEYIAGRNPPSAGPLFVQEAYFRPPGERPPSNNMAFPIASTNTLPAGAPNSGHGVSPMLPCRPDVSTINCWRPA 1588
             G+QIVQ  GN++ GG ++ + K E F QQS  F P GVC+SREPS + SSRQL++G++++  N ++S  + +FQP +    QRP+   LP   SSHFS+  PS +    QHSY   Y  P Q D  R + ++E WR+P+         G +I GRN     P  V +++FRPP ERPPS  M +  ++ + L A     GH    MLP RPD+ T+NCWRPA
Sbjct: 1175 TGDQIVQGPGNSSRGGLVEGAGKPEYFVQQSSSFSPAGVCSSREPSSFTSSRQLEFGNSDVLFNPEASSQNHRFQP-STPLSQRPMV-RLPSAPSSHFSY--PSHIQSQSQHSYTHPYPFPPQRDDARRYRNEEPWRIPSSGHSAENQNGAWIHGRNSHPGLPR-VTDSFFRPPPERPPSGTMNYQPSAASNLQAVPAIPGHTAPQMLPSRPDIPTVNCWRPA 1392
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy Swiss-Prot
Match: HUAL1_ARATH (HUA2-like protein 1 OS=Arabidopsis thaliana GN=At5g08230 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.533e-22
Identity = 88/240 (36.67%), Postives = 127/240 (52.92%), Query Frame = -2 
Query:  953 QLAYQPPVPHEFRGTPNGNQIVQMAGNTAHGGHIDASVKSELFPQQSPCFVP-GVCNSREPSGYVSSRQLDYGHNEMYLNAXXXXXXXXXXPGNAAFVQRPLAPSLPQTSSSHFSF-TKPSMXXXXXXXXXXXXSLPSQ-HDGRRPFVSDEQWRMP---------AGEYIAGRNPPSAGPLFVQEAYFRPPGERPPSNNMAFPIASTNTLPAGAPNSGHGVSPMLPCRPDVSTINCWRPA 1636
            Q  YQ  +  +       NQI  +  N AHG H D  VKSE    QS  F P G+C+  EP  ++SS+QL+YG++++    ++S  +QQ +P N +F+QRP+  +L    SSHF    +       + S+P  Y  PSQ  DGR+    +E+WRMP          G +I  RN P  G   V +  F+PP ERPPS  + + +A+ N L  G+  SG+  S ML  RPDV +   +RP+
Sbjct: 1210 QHEYQISMQRDHSSIATSNQIAPVPVNAAHGRHADGGVKSEYLMPQSSSFAPVGMCSYGEPLPFISSKQLEYGNSDVLFKQEASSQNQQLRPINTSFLQRPMIRNLAPAPSSHFPLPCRIVQSEPQRSSFPHPYHFPSQPVDGRQHM--NEEWRMPPNGCSADPQYGAWIGVRN-PFPGSRTVTDGVFQPPPERPPSGTVRYQLAA-NNLQGGSTISGNIASQMLLSRPDVPSAAQYRPS 1445
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy Swiss-Prot
Match: UVRAG_HUMAN (UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.025e-11
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 2 
Query:  260 ATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELL 595
            A ALGY AH VS+I+ +LQVPLRYP+   GS S + DN+                  T K  EFPL+ KG +  +  Y ++LL+K+I QL    G  +   R  + NLK  +
Sbjct:  361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNIND--------------KLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458
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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy Swiss-Prot
Match: UVRAG_MOUSE (UV radiation resistance associated protein OS=Mus musculus GN=Uvrag PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 7.663e-11
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 2 
Query:  260 ATALGYVAHAVSLIASYLQVPLRYPLRLGGSCSYVNDNVPPAGPTTLDFSWKTPLSATVKPVEFPLFLKGQDTTRAAYAIFLLSKDIEQLLNFIGEDSLGPRHLVANLKELL 595
            A ALGY AH VS+I+ +LQVPLRYP+   GS S + DN+                  T K  EFPL+ KG +  +  Y ++LL+K+I QL    G  +   R  + NLK  +
Sbjct:  360 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNIND--------------KLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 457
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067E0X5_CITSI2.145e-9874.38Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4U4V4_9ROSI3.217e-9873.89Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067KT16_JATCU2.374e-9671.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A067E1Y5_CITSI5.914e-9673.89Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
U5FKV1_POPTR1.817e-9171.98Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011422 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HUA2_ARATH2.124e-2242.60ENHANCER OF AG-4 protein 2 OS=Arabidopsis thaliana... [more]
HUAL1_ARATH9.533e-2236.67HUA2-like protein 1 OS=Arabidopsis thaliana GN=At5... [more]
UVRAG_HUMAN6.025e-1138.39UV radiation resistance-associated gene protein OS... [more]
UVRAG_MOUSE7.663e-1138.39UV radiation resistance associated protein OS=Mus ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15157:SF14SUBFAMILY NOT NAMEDcoord: 1..31
NoneNo IPR availablePANTHERPTHR15157FAMILY NOT NAMEDcoord: 57..206
NoneNo IPR availablePANTHERPTHR15157FAMILY NOT NAMEDcoord: 1..31
NoneNo IPR availablePANTHERPTHR15157:SF14SUBFAMILY NOT NAMEDcoord: 57..206

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011422 ID=g.arboreum_cottongen_reftransV1_0011422; Name=g.arboreum_cottongen_reftransV1_0011422; organism=Gossypium arboreum; type=contig; length=2033bp
GAAAAACATGCAGAGGAAGCTACGAGCAAGGCAACAATATATGATATCAC
AAGTTTCTTTGCTCTATCCTGTAAAGATCTTGGTTGGACCTGCACAAGAG
CAAGAACTTGAATCCTATCCAAGCAGTAGTAGACTAGGGAATTCTTCTGT
ATCTAAGCCCATTAATTGTGGAACCTTGACGATATTGGGTCTGCATCTCA
CCATGCGTCCTTTTACGAAGATGAGTTTTTTCACTGACAAAAAGGAGGTT
CAGAAATCTGCAACTGCCTTAGGATATGTTGCACATGCTGTTTCACTAAT
TGCTTCATATTTACAAGTTCCCTTGCGTTATCCTTTGCGCTTGGGTGGTT
CCTGCTCTTATGTCAACGACAATGTACCACCAGCAGGGCCTACAACTTTG
GATTTTTCATGGAAAACACCACTGTCTGCAACTGTGAAGCCTGTCGAATT
TCCGTTGTTTTTAAAAGGTCAAGACACAACAAGAGCAGCTTATGCTATAT
TCTTGTTAAGCAAGGATATTGAGCAACTTTTGAACTTCATCGGTGAGGAC
AGCTTAGGGCCACGGCATTTAGTAGCAAATTTGAAGGAGCTTCTGAGGTG
TGTCCAGTCTTCAGAATTCATAGATACCTCCTCGACATTTTGCGGTACTT
TGCTTCGTGCTTAGGAGTAGGATCTGTCAACATTGGTGGATATCCAAGTT
CCAACACCATAAATAGAGATATTTCAGATTATATGATTTTCAAAACCAAG
TCAGAATTATGGGCCTACACTCGGAAGCAAATGTTCCCAGGAAACATTTG
TCAGGAAAAATTACAATATACAATCCTGCCAAGGGTCTCCACAAGTTATC
AACACAGCCTTCACGTGAATATTGTATGTTGTCCAAAAATTGAACCGCCC
TTTAATGTAACTTGTCTAGCAGCCAACTAATAAGACTATTTCCTTATTCT
CGAGCTGGTCTCCAACAATTAATGGTAGACACATCTGGTCGACACGGCAA
CATGGGTGAAACACCATGACCCGAATTTGGAGCTCCAGCTGGTAAAGTAT
TGGTGGAAGCAATCGGAAAAGCCATATTATTTGAAGGCGGTCTTTCACCA
GGTGGTCTAAAGTAAGCTTCTTGGACAAACAATGGACCAGCAGATGGTGG
ATTTCTTCCTGCTATATATTCTCCTGCAGGCATTCTCCACTGTTCATCAG
AAACAAATGGCCTGCGGCCATCATGTTGCGATGGCAATGAGTATTGTGGA
GGGTATGAATGCTGAGGATGCGGTGGCATTGAAGGCTTTGTGAATGAGAA
ATGGCTAGATGAGGTCTGTGGCAGACTTGGGGCTAAAGGTCTTTGCACAA
AGGCTGCATTACCAGGTTGAAACTGTTGACTTGGTTGAGAGGATTGAGCA
TTCAAGTACATTTCATTATGTCCATAGTCCAATTGCCTTGAAGAAACATA
TCCAGAAGGCTCTCTAGAATTGCACACTCCTGGTACAAAGCAAGGTGATT
GCTGTGGAAACAATTCACTTTTCACAGAAGCATCAATATGACCTCCATGA
GCAGTATTTCCAGCCATTTGAACTATCTGATTACCATTCGGTGTGCCCCG
GAATTCATGAGGTACAGGTGGTTGATATGCCAACTGCGGAGAAGACTGTA
TTGCTGATTGGGGTGGTAGCATGGGCTGGGATAGCAGTGACGGTTGAGTT
GGCACTGGTGGTTGAGGTATGAAGGGTGGAGGAGGGCATGAAGGTGGCGC
AGGAGGAAGTTGAGTTGGTAGAGGCGGAGGAGGTGGAGGTGGCGATGGAG
ATGTTGGAGGTGGAGGTGGGGATGGAAAAGGTGGCAAAGGGGGTGGAGGT
GGAGGAGAATCAGGGGGCAAAGGCGGTGAACCCTCTGGTAGAGGAGGGAA
TTCGTTGGAGCTATTTGAAGCTGGTTCCATAATCCCCTGCTGCTGCCAGT
CCATTTGAAGAGCATCATTTGTGAATGGCTGGTCATTCTTCAGATGTCCA
GAAACATCTTCCATTTCAAGCTCACCATCCACG
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