g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: V4N7Q1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10012495mg PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 8.646e-66 Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 899 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1007
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B2SNQ3_GLYSO (Cellulose synthase-like protein D3 OS=Glycine soja GN=glysoja_035134 PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.665e-65 Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLL ITVTLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA Sbjct: 784 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCVLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 892
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: V4M4D3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019935mg PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 2.054e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 898 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLAILEIKWSGISLEEWWRNEQFWLIGGTSA 1006
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: M4ET92_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra032022 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.462e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 893 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1001
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D3CN50_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.477e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 894 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1002
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 4.817e-66 Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA ASPRMK+LQRIAYLNVGIYPFTS FLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 892 TGSVEIFFSRNNAFFASPRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1000
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 5.932e-66 Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNAL AS +MK+LQRIAYLNVGIYPFTS+FLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIIT+TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 872 TGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSA 980
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=3 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 5.932e-66 Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNAL AS +MK+LQRIAYLNVGIYPFTS+FLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIIT+TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 872 TGSVEIFFSRNNALFASSKMKVLQRIAYLNVGIYPFTSVFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITITLCLLAMLEIKWSGIALEEWWRNEQFWLIGGTSA 980
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 9.887e-66 Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLAS +MK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 892 TGSVEIFFSRNNALLASSKMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1000
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.164e-65 Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLAS +MK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV+TLNVTFLTYLL+IT+T+C+LAVLEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 917 TGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSA 1025
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.164e-65 Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLAS +MK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV+TLNVTFLTYLL+IT+T+C+LAVLEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 917 TGSVEIFFSRNNALLASRKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRNEQFWLIGGTSA 1025
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 2.283e-57 Identity = 86/109 (78.90%), Postives = 100/109 (91.74%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA+ A+ RMK LQR+AY NVG+YPFTS+FLIVYC LPA+SLFSGQFIVQ+L++TFL YLL IT+TLC+L++LEIKWSGI L EWWRNEQFW+IGGTSA Sbjct: 928 TGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRNEQFWVIGGTSA 1036
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.011e-57 Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA+ A P++KLLQRIAYLNVGIYPFTSIF++ YCFLP LSLFSG F+V+TL +FL YLLIIT++LC LAVLE+KWSGI LEEWWRNEQFWLIGGTSA Sbjct: 727 TGSVEIFFSRNNAIFAGPKLKLLQRIAYLNVGIYPFTSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRNEQFWLIGGTSA 835
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 8.268e-57 Identity = 86/109 (78.90%), Postives = 101/109 (92.66%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFS+NNA+ A+ R+K LQR+AYLNVGIYPFTSIFL+VYCFLPAL LFSG+FIVQ+L++ FL+YLL ITVTL L+++LE+KWSGI LEEWWRNEQFWLIGGTSA Sbjct: 785 TGSVEIFFSKNNAMFATRRLKFLQRVAYLNVGIYPFTSIFLVVYCFLPALCLFSGKFIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRNEQFWLIGGTSA 893
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 3.639e-56 Identity = 86/109 (78.90%), Postives = 100/109 (91.74%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YCFLPA SLFSGQFIV+TL+++FL YLL+IT+ L LAVLE+KWSGI LEEWWRNEQ+WLI GTS+ Sbjct: 853 TGSVEIFFSRNNAILASKRLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQFIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRNEQWWLISGTSS 961 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006804 ID=g.arboreum_cottongen_reftransV1_0006804; Name=g.arboreum_cottongen_reftransV1_0006804; organism=Gossypium arboreum; type=contig; length=331bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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