g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: V4N7Q1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10012495mg PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 8.646e-66 Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 899 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1007
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B2SNQ3_GLYSO (Cellulose synthase-like protein D3 OS=Glycine soja GN=glysoja_035134 PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.665e-65 Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLL ITVTLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA Sbjct: 784 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCVLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 892
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: V4M4D3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019935mg PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 2.054e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 898 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLAILEIKWSGISLEEWWRNEQFWLIGGTSA 1006
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: M4ET92_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra032022 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.462e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 893 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1001
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D3CN50_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.477e-65 Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLII++TLCLLA+LEIKWSGI LEEWWRNEQFWLIGGTSA Sbjct: 894 TGSVEIFFSRNNAFLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLIYLLIISITLCLLALLEIKWSGISLEEWWRNEQFWLIGGTSA 1002
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 1.544e-55 Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNA LAS ++ LLQRI+YLNVGIYPFTSIFL+VYCF+PALSLFSG FIVQ L++ FL YLL +T+TL L +LE+KWSGIELE+WWRNEQFWLI GTSA Sbjct: 891 TGSVEIFFSRNNAFLASRKLMLLQRISYLNVGIYPFTSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSA 999
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.890e-51 Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFSRNNAL ASPRMKLLQR+AY N G+YPFTS+FL+ YC LPA+SLFSG+FIVQ L+ TFL +LL+IT+TLCLLA+LEIKWSGI L EWWRNEQFW+IGGTSA Sbjct: 950 TGSVEIFFSRNNALFASPRMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSA 1058
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 6.392e-50 Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFS+NNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YC LPALSLFSGQFIV TL+ TFL+YLL+IT+TL LL +LE+KWSGI LEEWWRNEQFW+IGGTSA Sbjct: 761 TGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSA 869
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 7.053e-50 Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGSVEIFFS+NNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YC LPALSLFSGQFIV TL+ TFL+YLL+IT+TL LL +LE+KWSGI LEEWWRNEQFW+IGGTSA Sbjct: 761 TGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSA 869
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.024e-33 Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = -3 Query: 3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329 TGS+EIFFSRNN L S + LQR+AY+N+ YPFT++FLI Y +PALS +G FIVQ F YL I+ TL +LAVLE+KW+G+ + EW+RN QFW+ SA Sbjct: 680 TGSLEIFFSRNNPLFGSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSA 788
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.352e-33 Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = -3 Query: 3 GSVEIFFSRNNALLASPRMKL--LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNV-TFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326 GS+EIFFSRNNALLA R +L LQR AYLN +YPFTS+FL+ YC PA+ L +G T++ +L + VTL +AVLE +WSGI L EWWRNEQFW++ TSA Sbjct: 574 GSLEIFFSRNNALLAGGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAALMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSA 684
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.315e-31 Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -3 Query: 3 GSVEIFFSRNNAL---LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326 GSVEIF SR+ L R+K LQR++Y+N +YPFTS+ LI YC LPA+ L +G+FI+ TL+ + L + +++ + +VLE++WSGI +E+WWRNEQFW+IGG SA Sbjct: 733 GSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSA 843
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 2.526e-31 Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -3 Query: 3 GSVEIFFSRNNAL---LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326 GSVEIF SR+ L R+K LQR++Y+N +YPFTS+ LI YC LPA+ L +G+FI+ TL+ + L + +++ + +VLE++WSGI +E+WWRNEQFW+IGG SA Sbjct: 733 GSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSA 843
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.067e-31 Identity = 52/111 (46.85%), Postives = 79/111 (71.17%), Query Frame = -3 Query: 3 GSVEIFFSRNNALL---ASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326 GSVEIFFSR++ LL + +K L+R +Y+N IYPFTS+ L+ YC LPA+ L +G+FI+ ++ + + + +++ +LE++WSG+ +EEWWRNEQFW+IGG SA Sbjct: 798 GSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSA 908
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.067e-31 Identity = 52/111 (46.85%), Postives = 79/111 (71.17%), Query Frame = -3 Query: 3 GSVEIFFSRNNALL---ASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326 GSVEIFFSR++ LL + +K L+R +Y+N IYPFTS+ L+ YC LPA+ L +G+FI+ ++ + + + +++ +LE++WSG+ +EEWWRNEQFW+IGG SA Sbjct: 798 GSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSA 908 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006804 ID=g.arboreum_cottongen_reftransV1_0006804; Name=g.arboreum_cottongen_reftransV1_0006804; organism=Gossypium arboreum; type=contig; length=331bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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