g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006804
Unique Nameg.arboreum_cottongen_reftransV1_0006804
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0006804:1..331 .
Chr3:41009127..41009457 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NW57_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_19785 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.992e-69
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2N3T6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G257300 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.030e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2QFY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G052200 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NST5_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_10451 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: F6HEF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02020 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.485e-68
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQR+AYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL+ITVTLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  896 TGSVEIFFSRNNALLASPRMKLLQRVAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLVITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1004
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: W9QDD3_9ROSA (Cellulose synthase-like protein D3 OS=Morus notabilis GN=L484_019681 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.637e-68
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLC+LAVLEI+WSGIELEEWWRNEQFWLIGGTSA
Sbjct:  893 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCMLAVLEIRWSGIELEEWWRNEQFWLIGGTSA 1001
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A067JP46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00552 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLL+ITVTLCLLA+LEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  888 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLVITVTLCLLAILEIKWSGIELEEWWRNEQFWLIGGTSA 996
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A058ZXT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00085 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL IT+TLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  885 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITLTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 993
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A061EYA4_THECC (Cellulose synthase-like D3 OS=Theobroma cacao GN=TCM_025462 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.592e-67
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL ITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  922 TGSVEIFFSRNNAFLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1030
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: L0ATQ4_POPTO (Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.772e-67
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -3 
Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLIIT+TLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLIITLTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.474e-30
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = -3 
Query:    3 GSVEIFFSRNNALLAS--PRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIF SR+  L  +   R+K L+R AY N  +YPFTSI L+ YC +PA+ L +G+FI+ TLN     + + + +++    VLE++WSG+ +E+WWRNEQFW+IGG SA
Sbjct:  807 GSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWRNEQFWVIGGVSA 916
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.126e-30
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = -3 
Query:    3 GSVEIFFSRNNAL---LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIFFSR++ L       ++K L+R AY N  IYPFTSI L+ YC LPA+ L + +FI+  ++     + + + +++ +  +LE++WSG+ +EEWWRNEQFW+IGG SA
Sbjct:  771 GSVEIFFSRHSPLWYGYKGGKLKWLERFAYANTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSGVSIEEWWRNEQFWVIGGISA 881
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.746e-29
Identity = 52/110 (47.27%), Postives = 80/110 (72.73%), Query Frame = -3 
Query:    3 GSVEIFFSRNNALLAS--PRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIFFSR+  L  +   ++K+L+R+AY+N  +YPFTSI L+ YC +PA+ L +G+FI+ T+N     + L + +++   A+LE++WSG+ + + WRNEQFW+IGG SA
Sbjct:  793 GSVEIFFSRHCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRNEQFWVIGGVSA 902
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.068e-29
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = -3 
Query:    3 GSVEIFFSRNNALLAS--PRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GS+EI  SR+  +      R++LL+RIAY+N  +YP TSI LI YC LPA  L + +FI+  ++     + +++ +++ +  +LE++WSG+ +E+WWRNEQFW+IGGTSA
Sbjct:  825 GSIEILLSRHCPIWYGYHGRLRLLERIAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRNEQFWVIGGTSA 934
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.430e-29
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = -3 
Query:    3 GSVEIFFSRNNALLAS--PRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEI FSR+  +      R+K L+R AY+N  IYP TSI L++YC LPA+ L +G+FI+  ++     + + + +++    +LE++WSG+ ++EWWRNEQFW+IGG SA
Sbjct:  826 GSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRNEQFWVIGGISA 935
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NW57_GOSAR9.992e-69100.00Cellulose synthase-like protein D3 OS=Gossypium ar... [more]
A0A0D2N3T6_GOSRA1.030e-68100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QFY2_GOSRA2.276e-6899.08Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NST5_GOSAR2.276e-6899.08Cellulose synthase-like protein D3 OS=Gossypium ar... [more]
F6HEF7_VITVI5.485e-6897.25Putative uncharacterized protein OS=Vitis vinifera... [more]
W9QDD3_9ROSA9.637e-6897.25Cellulose synthase-like protein D3 OS=Morus notabi... [more]
A0A067JP46_JATCU2.763e-6796.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A058ZXT3_EUCGR2.763e-6797.25Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A061EYA4_THECC3.592e-6798.17Cellulose synthase-like D3 OS=Theobroma cacao GN=T... [more]
L0ATQ4_POPTO4.772e-6797.25Cellulose synthase-like protein OS=Populus tomento... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CESA7_ORYSJ3.474e-3049.09Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA7_ARATH5.126e-3046.85Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA4_ARATH2.746e-2947.27Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA1_ARATH6.068e-2944.55Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA8_ORYSJ6.430e-2945.45Probable cellulose synthase A catalytic subunit 8 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005150Cellulose synthasePFAMPF03552Cellulose_syntcoord: 1..90
e-value: 3.5E-44
score: 151.3
NoneNo IPR availablePANTHERPTHR13301:SF65SUBFAMILY NOT NAMEDcoord: 1..90
NoneNo IPR availablePANTHERPTHR13301X-BOX TRANSCRIPTION FACTOR-RELATEDcoord: 1..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 39..61

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006804 ID=g.arboreum_cottongen_reftransV1_0006804; Name=g.arboreum_cottongen_reftransV1_0006804; organism=Gossypium arboreum; type=contig; length=331bp
TGGGCACTTGTGCCCCCAATTAACCAAAACTGCTCGTTTCTCCACCATTC
TTCTAACTCAATACCAGACCACTTGATTTCTAGCACGGCAAGCAAACAAA
GAGTTACAGTAATGATGAGGAGGTATGTAAGGAAAGTGACATTGAGGGTC
TGCACGATGAACTGGCCGGAGAAGAGGGAAAGTGCGGGAAGGAAGCAGTA
GACAATCAGGAAAATCGAGGTAAAGGGGTAGATTCCGACGTTTAGATATG
CAATCCTCTGCAATAACTTCATTCGTGGACTGGCGAGGAGAGCATTGTTA
CGGGAAAAGAAGATCTCAACAGAGCCAGTTG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005150Cellulose_synth
Vocabulary: Molecular Function
TermDefinition
GO:0016760cellulose synthase (UDP-forming) activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0030244cellulose biosynthetic process