g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0006804
Unique Name	g.arboreum_cottongen_reftransV1_0006804
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	331

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0006804:1..331 . Chr3:41009127..41009457 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NW57_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_19785 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.992e-69
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2N3T6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G257300 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.030e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0D2QFY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G052200 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A0B0NST5_GOSAR (Cellulose synthase-like protein D3 OS=Gossypium arboreum GN=F383_10451 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.276e-68
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK+LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  891 TGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 999

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: F6HEF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02020 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.485e-68
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQR+AYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL+ITVTLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  896 TGSVEIFFSRNNALLASPRMKLLQRVAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLVITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1004

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: W9QDD3_9ROSA (Cellulose synthase-like protein D3 OS=Morus notabilis GN=L484_019681 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.637e-68
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLC+LAVLEI+WSGIELEEWWRNEQFWLIGGTSA
Sbjct:  893 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCMLAVLEIRWSGIELEEWWRNEQFWLIGGTSA 1001

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A067JP46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00552 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLL+ITVTLCLLA+LEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  888 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLVITVTLCLLAILEIKWSGIELEEWWRNEQFWLIGGTSA 996

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A058ZXT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00085 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.763e-67
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL IT+TLC+LAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  885 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITLTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 993

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: A0A061EYA4_THECC (Cellulose synthase-like D3 OS=Theobroma cacao GN=TCM_025462 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.592e-67
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLL ITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  922 TGSVEIFFSRNNAFLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLTITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 1030

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Match: L0ATQ4_POPTO (Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.772e-67
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNALLASPRMK LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFL YLLIIT+TLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA
Sbjct:  890 TGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLIITLTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 998

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.544e-55
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNA LAS ++ LLQRI+YLNVGIYPFTSIFL+VYCF+PALSLFSG FIVQ L++ FL YLL +T+TL  L +LE+KWSGIELE+WWRNEQFWLI GTSA
Sbjct:  891 TGSVEIFFSRNNAFLASRKLMLLQRISYLNVGIYPFTSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRNEQFWLISGTSA 999

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.890e-51
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFSRNNAL ASPRMKLLQR+AY N G+YPFTS+FL+ YC LPA+SLFSG+FIVQ L+ TFL +LL+IT+TLCLLA+LEIKWSGI L EWWRNEQFW+IGGTSA
Sbjct:  950 TGSVEIFFSRNNALFASPRMKLLQRVAYFNAGMYPFTSVFLLAYCLLPAVSLFSGKFIVQRLSATFLAFLLVITLTLCLLALLEIKWSGITLHEWWRNEQFWVIGGTSA 1058

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.392e-50
Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFS+NNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YC LPALSLFSGQFIV TL+ TFL+YLL+IT+TL LL +LE+KWSGI LEEWWRNEQFW+IGGTSA
Sbjct:  761 TGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSA 869

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.053e-50
Identity = 88/109 (80.73%), Postives = 101/109 (92.66%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGSVEIFFS+NNA+LAS R+K LQR+AYLNVGIYPFTS+FLI+YC LPALSLFSGQFIV TL+ TFL+YLL+IT+TL LL +LE+KWSGI LEEWWRNEQFW+IGGTSA
Sbjct:  761 TGSVEIFFSKNNAVLASRRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQFWVIGGTSA 869

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.024e-33
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = -3

Query:    3 TGSVEIFFSRNNALLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 329
            TGS+EIFFSRNN L  S  +  LQR+AY+N+  YPFT++FLI Y  +PALS  +G FIVQ     F  YL I+  TL +LAVLE+KW+G+ + EW+RN QFW+    SA
Sbjct:  680 TGSLEIFFSRNNPLFGSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSA 788

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.352e-33
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = -3

Query:    3 GSVEIFFSRNNALLASPRMKL--LQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNV-TFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GS+EIFFSRNNALLA  R +L  LQR AYLN  +YPFTS+FL+ YC  PA+ L +G          T++ +L  + VTL  +AVLE +WSGI L EWWRNEQFW++  TSA
Sbjct:  574 GSLEIFFSRNNALLAGGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCLFPAIPLIAGGGGWNAAPTPTYVAFLAALMVTLAAVAVLETRWSGIALGEWWRNEQFWMVSATSA 684

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.315e-31
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -3

Query:    3 GSVEIFFSRNNAL---LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIF SR+  L       R+K LQR++Y+N  +YPFTS+ LI YC LPA+ L +G+FI+ TL+     + L + +++ + +VLE++WSGI +E+WWRNEQFW+IGG SA
Sbjct:  733 GSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSA 843

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.526e-31
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -3

Query:    3 GSVEIFFSRNNAL---LASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIF SR+  L       R+K LQR++Y+N  +YPFTS+ LI YC LPA+ L +G+FI+ TL+     + L + +++ + +VLE++WSGI +E+WWRNEQFW+IGG SA
Sbjct:  733 GSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSA 843

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.067e-31
Identity = 52/111 (46.85%), Postives = 79/111 (71.17%), Query Frame = -3

Query:    3 GSVEIFFSRNNALL---ASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIFFSR++ LL    +  +K L+R +Y+N  IYPFTS+ L+ YC LPA+ L +G+FI+  ++     + + + +++    +LE++WSG+ +EEWWRNEQFW+IGG SA
Sbjct:  798 GSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSA 908

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.067e-31
Identity = 52/111 (46.85%), Postives = 79/111 (71.17%), Query Frame = -3

Query:    3 GSVEIFFSRNNALL---ASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLIITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA 326
            GSVEIFFSR++ LL    +  +K L+R +Y+N  IYPFTS+ L+ YC LPA+ L +G+FI+  ++     + + + +++    +LE++WSG+ +EEWWRNEQFW+IGG SA
Sbjct:  798 GSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRNEQFWVIGGVSA 908

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NW57_GOSAR	9.992e-69	100.00	Cellulose synthase-like protein D3 OS=Gossypium ar...	[more]
A0A0D2N3T6_GOSRA	1.030e-68	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QFY2_GOSRA	2.276e-68	99.08	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NST5_GOSAR	2.276e-68	99.08	Cellulose synthase-like protein D3 OS=Gossypium ar...	[more]
F6HEF7_VITVI	5.485e-68	97.25	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9QDD3_9ROSA	9.637e-68	97.25	Cellulose synthase-like protein D3 OS=Morus notabi...	[more]
A0A067JP46_JATCU	2.763e-67	96.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A058ZXT3_EUCGR	2.763e-67	97.25	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A061EYA4_THECC	3.592e-67	98.17	Cellulose synthase-like D3 OS=Theobroma cacao GN=T...	[more]
L0ATQ4_POPTO	4.772e-67	97.25	Cellulose synthase-like protein OS=Populus tomento...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0006804 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CSLD3_ORYSJ	1.544e-55	77.98	Cellulose synthase-like protein D3 OS=Oryza sativa...	[more]
CSLD4_ORYSJ	1.890e-51	79.82	Cellulose synthase-like protein D4 OS=Oryza sativa...	[more]
CSLD5_ORYSI	6.392e-50	80.73	Putative cellulose synthase-like protein D5 OS=Ory...	[more]
CSLD5_ORYSJ	7.053e-50	80.73	Cellulose synthase-like protein D5 OS=Oryza sativa...	[more]
CSLF6_ORYSJ	1.024e-33	54.13	Probable mixed-linked glucan synthase 6 OS=Oryza s...	[more]
CSLF7_ORYSJ	1.352e-33	55.86	Probable mixed-linked glucan synthase 7 OS=Oryza s...	[more]
CESA4_ORYSJ	2.315e-31	50.45	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA4_ORYSI	2.526e-31	50.45	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]
CESA9_ORYSJ	8.067e-31	46.85	Cellulose synthase A catalytic subunit 9 [UDP-form...	[more]
CESA9_ORYSI	8.067e-31	46.85	Cellulose synthase A catalytic subunit 9 [UDP-form...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005150	Cellulose synthase	PFAM	PF03552	Cellulose_synt	coord: 1..90 e-value: 3.5E-44 score: 151.3
None	No IPR available	PANTHER	PTHR13301:SF65	SUBFAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 1..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..64
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..35
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 39..61

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0006804 ID=g.arboreum_cottongen_reftransV1_0006804; Name=g.arboreum_cottongen_reftransV1_0006804; organism=Gossypium arboreum; type=contig; length=331bp
TGGGCACTTGTGCCCCCAATTAACCAAAACTGCTCGTTTCTCCACCATTC
TTCTAACTCAATACCAGACCACTTGATTTCTAGCACGGCAAGCAAACAAA
GAGTTACAGTAATGATGAGGAGGTATGTAAGGAAAGTGACATTGAGGGTC
TGCACGATGAACTGGCCGGAGAAGAGGGAAAGTGCGGGAAGGAAGCAGTA
GACAATCAGGAAAATCGAGGTAAAGGGGTAGATTCCGACGTTTAGATATG
CAATCCTCTGCAATAACTTCATTCGTGGACTGGCGAGGAGAGCATTGTTA
CGGGAAAAGAAGATCTCAACAGAGCCAGTTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005150	Cellulose_synth

Vocabulary: **Molecular Function**
Term	Definition
GO:0016760	cellulose synthase (UDP-forming) activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

Search form

g.arboreum_cottongen_reftransV1_0006804, g.arboreum_cottongen_reftransV1_0006804 (contig) Gossypium arboreum

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