g.arboreum_cottongen_reftransV1_0019635, g.arboreum_cottongen_reftransV1_0019635 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019635
Unique Nameg.arboreum_cottongen_reftransV1_0019635
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1706
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr7chromosomeg.arboreum_cottongen_reftransV1_0019635:1..1706 .
Chr7:30128615..30133654 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Match: M4CH51_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra003534 PE=3 SV=1)

HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 335/465 (72.04%), Postives = 388/465 (83.44%), Query Frame = 3
Query:   18 ERLLNGMGKDVGVPSWKHSLRHVLVATLSSFLYGYHLGVVNETLESISRDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTE---------VSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALL 1385
            E  + G GKD+G PSWK SL HV VA+L+S L+GYHLGVVNETLESIS DLGF GNT+AEGLVVSTCLGGAF+GSLFSGL+ADGVGRRRA QL ALPMIIGAS+SA  +SL  MLLGR FVG GMGIGP+V ALYVTE         VSPAYVRGTYGS TQIAT LGL+ SLF G PAK   GWWRICFW S  PA +LA+FM+   ESP WLFKRGRAA+AE  FEKLLGG YVK+AMAEL KSDRGD+ D+ K SELL+G   +VVFIGSTLFALQQLSGINAVFYFSSTVF+ AGVPS SAN+CVG+ NLLGS VA++LMD+LGRKVLLIGSF+GM V++ LQ  + TS  S    ++LSVGGMLLFVL+FA GAGPVPSILLSE+ PGR+RA A++VC+A HW++NFFVGL FLR+LEQ+G ++LN+IFG FC++AV+F++KNV+ETKGKSLQEIEI+LL
Sbjct:  946 ETAVTGTGKDIGNPSWKRSLPHVFVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIIGASVSATTESLEGMLLGRFFVGIGMGIGPSVTALYVTESEAHISTLQVSPAYVRGTYGSSTQIATCLGLLASLFAGIPAKDNLGWWRICFWISTVPAVVLAVFMQLCAESPQWLFKRGRAAEAEVVFEKLLGGAYVKAAMAELVKSDRGDDGDSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQALAHTSYSSTFGTLFLSVGGMLLFVLSFATGAGPVPSILLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVIETKGKSLQEIEISLL 1410          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Match: B9DHW0_ARATH (AT1G79820 protein OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=1)

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 341/457 (74.62%), Postives = 395/457 (86.43%), Query Frame = 3
Query:   21 RLLNGMGKDVGVPSWKHSLRHVLVATLSSFLYGYHLGVVNETLESISRDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALLPS 1391
            RL  G GKD G PSWK SL HVLVA+L+S L+GYHLGVVNETLESIS DLGF GNT+AEGLVVSTCLGGAF+GSLFSGL+ADGVGRRRA QL ALPMI+GAS+SA+ +SL  MLLGR  VG GMGIGP+V ALYVTEVSPAYVRGTYGS TQIAT +GL+GSLF G PAK   GWWRICFW S  PAA+LA+FME  VESP WLFKRGRAA+AEA FEKLLGG YVK+AMAEL KSDRGD+AD+ K SELL+G   +VVFIGSTLFALQQLSGINAVFYFSSTVF+ AGVPS SAN+CVG+ NLLGS VA++LMD+LGRKVLLIGSF+GM V++ LQ  + TSL S    ++LSVGGMLLFVL+FA GAGPVPS+LLSE+ PGR+RA A++VC+A HW++NFFVGL FLR+LEQ+G ++LN+IFG FC++AV+F++KNV+ETKGKSLQEIEI+LL S
Sbjct:   37 RLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISLLSS 493          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Match: D7KXP4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477286 PE=3 SV=1)

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 339/457 (74.18%), Postives = 395/457 (86.43%), Query Frame = 3
Query:   21 RLLNGMGKDVGVPSWKHSLRHVLVATLSSFLYGYHLGVVNETLESISRDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALLPS 1391
            RL  G GK+ G PSWK SL HVLVA+L+S L+GYHLGVVNETLESIS DLGF GNT+AEGLVVSTCLGGAF+GSLFSGL+ADGVGRRRA QL ALPMI+GAS+SA+ +SL  MLLGR  VG GMGIGP+V ALYVTEVSPAYVRGTYGS TQIAT +GL+GSLF G PAK   GWWRICFW S  PAA+LA+FME  VESP WLFKRGRAA+AEA FEKLLGG YVK++MAEL KSDRGD+AD+ K SELL+G   +VVFIGSTLFALQQLSGINAVFYFSSTVF+ AGVPS SAN+CVG+ NLLGS VA++LMD+LGRKVLLIGSF+GM V++ LQ  + TSL S    ++LSVGGMLLFVL+FA GAGPVPS+LLSE+ PGR+RA A++VC+A HW++NFFVGL FLR+LEQ+G ++LN+IFG FC++AV+F++KNV+ETKGKSLQEIEI+LL S
Sbjct:   37 RLPTGTGKENGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLEGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKASMAELMKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLSSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISLLSS 493          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Match: A0A0A0LAW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G485850 PE=3 SV=1)

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 334/455 (73.41%), Postives = 391/455 (85.93%), Query Frame = 3
Query:   30 NGMGKDVGVPSWKHSLRHVLVATLSSFLYGYHLGVVNETLESISRDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALLPSE 1394
             G  +  G PSW+    HV+VATL+SFL+GYHLGVVNETLESIS DL F G+T+AEGLVVSTCLGGAF+GSLFSG IADGVGRRRALQLCALPMIIGASMSA  K+LW MLLGRLFVGTGMG+GPAVAALYV+EVSPAYVRGT+GSFTQI++ LGL+GSLF+G  AK I GWWR CFW SV PAA+LAL MEFS ESPHWLFK GR A+AEAEFEKLLGG  VK A AELSKSD+G+++   K SELL+G H +VVFIGSTLFALQQLSGINAVFYFSS+VF++ GVPS+ AN+C+G+AN LGS VAMILMD+LGR+VLL+GSFSGMVV+M LQ+  A+S  S     YLS GGMLLFVLTF++GAGPVPS+LLSE+FP R+RA A++ CM+ HW++NFFVGL FL LLEQIG  +L ++FGAFCL++V+F+K+NV+ETKGKSLQEIE+ALLP E
Sbjct:   29 EGSVRHTGYPSWRRPFPHVVVATLASFLFGYHLGVVNETLESISLDLAFSGSTLAEGLVVSTCLGGAFLGSLFSGWIADGVGRRRALQLCALPMIIGASMSATTKNLWGMLLGRLFVGTGMGLGPAVAALYVSEVSPAYVRGTFGSFTQISSCLGLLGSLFMGLQAKGIVGWWRACFWVSVIPAALLALLMEFSAESPHWLFKSGRTAEAEAEFEKLLGGADVKYAYAELSKSDKGEDSGAVKLSELLHGRHHRVVFIGSTLFALQQLSGINAVFYFSSSVFKSFGVPSDRANICIGVANFLGSIVAMILMDKLGRRVLLLGSFSGMVVSMGLQVFGASSFPSSTEAFYLSAGGMLLFVLTFSLGAGPVPSLLLSEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLPLLEQIGAQILYTVFGAFCLISVIFVKRNVVETKGKSLQEIEMALLPVE 483          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Match: R0GHA2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10020183mg PE=3 SV=1)

HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 338/457 (73.96%), Postives = 393/457 (86.00%), Query Frame = 3
Query:   21 RLLNGMGKDVGVPSWKHSLRHVLVATLSSFLYGYHLGVVNETLESISRDLGFHGNTMAEGLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALLPS 1391
            RL  G  KD G PSWK SL HVLVA+L+S L+GYHLGVVNETLESIS DLGF GNTMAEGLVVSTCLGGAF+GSLFSGL+ DGVGRRRA QL ALPMI+GAS+SA+ +SL  MLLGR  VG GMGIGP+V ALYVTEVSPAYVRGTYGS TQIAT +GL+G+LF G PAK   GWWRICFW S+ PAA+LA+FME  VESP WLFKRGRAA+AEA FEKLLGG YVK+AMAEL KSDRGD+AD+ K SELL+G   +VVFIGSTLFALQQLSGINAVFYFSSTVF+ AGVPS SAN+CVG+ NLLGS VA++LMD+LGRKVLLIGSF+GM V++ LQ  + TSL S    ++LSVGGMLLFVL+FA GAGPVPS+LLSE+ PGR+RA A++VC+A HW++NFFVGL FLR+LEQ+G ++LN+ FG FC++AV+F++KNV+ETKGKSLQEIEI+LL S
Sbjct:   37 RLPTGAAKDSGDPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTMAEGLVVSTCLGGAFIGSLFSGLVTDGVGRRRAFQLSALPMIVGASLSASTESLEGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGALFAGIPAKDNLGWWRICFWISIFPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGAYVKAAMAELMKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSASANICVGLCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAMAYTSLSSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNATFGFFCVVAVIFVQKNVIETKGKSLQEIEISLLSS 493          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Match: TRET1_CULQU (Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.431e-44
Identity = 122/394 (30.96%), Postives = 197/394 (50.00%), Query Frame = 3
Query:  231 FVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLG-----GPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMC---VGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAM-----FLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIE 1373
             VG +  G + + +GR+  +   A P II   + A A  +  +L+GR   G  +G+      +Y+ E     VRGT G    + T  G +G + + F A     W  + F  +  P   L L M    E+P W   RGR   A    + L G      P +K  +     ++R   A      +LL   + K + I   L   QQLSGINAV +++  +F+ AG  +   N+C   VG+ N + +F+A +L+DRLGRK+LL  S   M++ +     F  + +    VS     +L +   ++FVL F++G GP+P +++ E+ PG++R +A SV  AF+W   F V   F  ++  IG      +FG+ C++ ++F+   V ET+GKSL++IE
Sbjct:  111 LVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLG---LLPTAFGNIG-ILLCFVAGNYMDWSELAFLGATLPVPFLIL-MFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAER--HASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAG-STIDENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIG--WLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIE 494          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Match: GTR3_HUMAN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Homo sapiens GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.060e-44
Identity = 130/452 (28.76%), Postives = 220/452 (48.67%), Query Frame = 3
Query:   84 VLVATLSSFLYGYHLGVVN--ETL--ESISRDLGFHGNTMAEGLVVSTCLG--------GAFVGSLFSGLIADGVGRRRALQLCALPMIIGAS---MSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFP-AKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLF-KRGRAADAEAEFEKLLGGPYVKSAMAEL-SKSDRGDEADTFKFSELL-YGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSE-SANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIA 1379
            + VAT+ SF +GY+ GV+N  E +  E I++ L   GN     +++++           G  +GS   GL  +  GRR ++ +  L  + G     +   AKS+  ++LGRL +G   G+      +Y+ E+SP  +RG +G+  Q+   +G++ +   G       E  W +    ++ PA + +  + F  ESP +L   R    +A+   ++L G   V   + E+  +S R  +       EL     +R+ + I   L   QQLSGINAVFY+S+ +F+ AGV     A +  G+ N + + V++ L++R GR+ L +    GM     L   S     +     ++ +G +L+FV  F IG GP+P  +++E+F    R  A++V    +W  NF VGL F      +G  V   IF  F +  + F    V ET+G++ ++I  A
Sbjct:   14 ITVATIGSFQFGYNTGVINAPEKIIKEFINKTLTDKGNAPPSEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVVGILVAQIFGLEFILGSEELWPLLLGFTILPAILQSAALPFCPESPRFLLINRKEEENAKQILQRLWGTQDVSQDIQEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHYLGAYVF-IIFTGFLITFLAFTFFKVPETRGRTFEDITRA 464          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Match: TRET1_POLVA (Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.990e-44
Identity = 122/386 (31.61%), Postives = 192/386 (49.74%), Query Frame = 3
Query:  270 VGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGG-----PYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSESANMC---VGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAMFLQITSATSLVSRGSGV------YLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALL 1385
            +GR+  +   A+P I+   + A A S+W +L GR   G  +GI      +Y+ E     VRGT G    + T  G +G + I F A     W  + F  S+ P   + L +    E+P W   RGR   A    + L G      P +K  +    +++R   A      +L+   + K + I   L   QQLSGINAV +++ ++F+ AG  +   N+C   VG+ N   +F A +L+DRLGRK+LL  S   MV+ +   +T  T    + SG       +L +   +++V+ F+ G GP+P ++L E+ PG++R +A SV   F+W   F V   F  ++  IG       FG  CL+ + F+   V ET+GKSL+EIE  ++
Sbjct:  111 LGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETVQPEVRGTLG---LLPTAFGNIG-ILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIP-ETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAER--HASQNAIFDLMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAG-STIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITL---LTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMM 485          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Match: TRET1_BOMMO (Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.104e-44
Identity = 123/410 (30.00%), Postives = 203/410 (49.51%), Query Frame = 3
Query:  228 AFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGWWRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLG-GPYVKSAMAELSKSD-RGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAG--VPSESANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVV------AMFLQITSATSLVSRGSGVYLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQI---GPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEIEIALLPSE*RALRDIS 1418
            A VG +  G + + +GR++ +   A+P  IG  + A A ++  +  GR+  G  +GI      +Y+ E     VRG  G    + T  G  G + + F   +   W  + F+ +  P     L M  + E+P W   + R  +A      L G    ++  M +L+ S    D      F +L    +   V I   L   QQL+GINAV ++++++F+ +G  V    A++ +G+ N + +F+A +L+DRLGRKVLL  S   M+       A F    +   + + G   +L +  ++++VL F+IG GP+P ++L E+ P ++R  A S+   F+W   F V   F  +++ I   G L L   F   C+  +LF+   V ETKGKSL+EIE+ L     R +R+IS
Sbjct:  101 ALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALG---LLPTAFGNTG-ILLAFLVGSYLDWSNLAFFGAAIPVPFF-LLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGGNAFKQLFSKRYLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYG---WLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWL---FAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGS-RRVRNIS 498          
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.475e-44
Identity = 141/465 (30.32%), Postives = 229/465 (49.25%), Query Frame = 3
Query:   78 RHVLVATLSSFL----YGYHLGVVNETLESISRDLGFH---GNTMAE--GLVVSTCLGGAFVGSLFSGLIADGVGRRRALQLCALPMIIGASMSAAAKSLWAMLLGRLFVGTGMGIGPAVAALYVTEVSPAYVRGTYGSFTQIATGLGLMGSLFIGFPAKAIEGW---WRICFWASVAPAAILALFMEFSVESPHWLFKRGRAADAEAEFEKLLGGPYVKSAMAELSKSDRGDEADTFKFSELLYGHHRKVVFIGSTLFALQQLSGINAVFYFSSTVFETAGVPSES-ANMCVGIANLLGSFVAMILMDRLGRKVLLIGSFSGMVVAM-----FLQITSATSLVSRGSGV----------------YLSVGGMLLFVLTFAIGAGPVPSILLSEMFPGRVRANAVSVCMAFHWIVNFFVGLFFLRLLEQIGPLVLNSIFGAFCLLAVLFIKKNVLETKGKSLQEI 1370
            R V +AT ++ L    +G+ LG  +  + S+ R        G+T A   G VV+       V   +   + D  GR+ +L LC +P + G ++  AA+ +W +L GRL  G   G+   VA +Y++E++   VRG  GS  Q+    G++ +         + GW   WR        P  ++ L M +  E+P +L  + +  +A A    L G      +     +   G E   F+ + L      K + IG  L   QQLSG+NA+ ++++T+FE A     S A++ VGI  +L + VA ++MDR GRK+LL  S   MV +M     + ++T +    S   G+                +L+VG M LF+  FA+G GP+P +L+SE+FP  ++  A  VC+  +W + F V   F  ++E + P     +  AFC+L+VLF    V ETKG++L++I
Sbjct:   24 RRVFLATFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDTAASWFGAVVTLGAAAGGVLGGW---LLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAY--------VAGWVLEWRWLAVLGCVPPTLMLLLMCYMPETPRFLLTQHQYQEAMAALRFLWG------SEEGWEEPPVGAEHQGFQLAMLRRPGVHKPLIIGICLMVFQQLSGVNAIMFYANTIFEEAKFKDSSLASVTVGIIQVLFTAVAALIMDRAGRKLLLALSGVIMVFSMSAFGTYFKLTQSGPSNSSHVGLLVPISAEPADVHLGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHIKGVATGVCVLTNWFMAFLVTKEFNSIMEILRPYGAFWLTAAFCILSVLFTLTFVPETKGRTLEQI 471          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M4CH51_BRARP0.000e+072.04Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
B9DHW0_ARATH0.000e+074.62AT1G79820 protein OS=Arabidopsis thaliana GN=At1g7... [more]
D7KXP4_ARALL0.000e+074.18Putative uncharacterized protein OS=Arabidopsis ly... [more]
A0A0A0LAW8_CUCSA0.000e+073.41Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
R0GHA2_9BRAS0.000e+073.96Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019635 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRET1_CULQU2.431e-4430.96Facilitated trehalose transporter Tret1 OS=Culex q... [more]
GTR3_HUMAN3.060e-4428.76Solute carrier family 2, facilitated glucose trans... [more]
TRET1_POLVA4.990e-4431.61Facilitated trehalose transporter Tret1 OS=Polyped... [more]
TRET1_BOMMO5.104e-4430.00Facilitated trehalose transporter Tret1 OS=Bombyx ... [more]
GTR8_RAT6.475e-4430.32Solute carrier family 2, facilitated glucose trans... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003663Sugar/inositol transporterPRINTSPR00171SUGRTRNSPORTcoord: 354..375
score: 28.3
coord: 113..132
score: 28.42
coord: 28..38
score: 39.92
coord: 377..389
score: 38.4
coord: 268..278
score: 65.38
IPR003663Sugar/inositol transporterTIGRFAMTIGR00879TIGR00879coord: 21..449
e-value: 6.2E-85
score: 283.6
IPR005828Major facilitator, sugar transporter-likePFAMPF00083Sugar_trcoord: 21..451
e-value: 5.0E-91
score: 305.7
NoneNo IPR availableGENE3D1.20.1250.20coord: 255..437
e-value: 1.1E-16
score: 60.2
coord: 19..203
e-value: 6.6E-22
score: 77.2
NoneNo IPR availablePANTHERPTHR23503FAMILY NOT NAMEDcoord: 3..453
NoneNo IPR availablePANTHERPTHR23503:SF19PLASTIDIC GLUCOSE TRANSPORTER 3-RELATEDcoord: 3..453
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 135..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..168
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..281
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 314..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 282..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 320..338
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 388..408
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 350..376
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..90
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 414..434
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..256
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 339..349
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 435..457
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 169..173
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 293..313
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 377..387
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..197
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 409..413
NoneNo IPR availableTMHMMTMhelixcoord: 144..166
NoneNo IPR availableTMHMMTMhelixcoord: 389..411
NoneNo IPR availableTMHMMTMhelixcoord: 354..376
NoneNo IPR availableTMHMMTMhelixcoord: 112..134
NoneNo IPR availableTMHMMTMhelixcoord: 21..38
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 415..434
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 320..339
NoneNo IPR availableTMHMMTMhelixcoord: 257..279
IPR005829Sugar transporter, conserved sitePROSITEPS00216SUGAR_TRANSPORT_1coord: 76..93
IPR005829Sugar transporter, conserved sitePROSITEPS00216SUGAR_TRANSPORT_1coord: 309..325
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 20..442
score: 43.152
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 12..450

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019635 ID=g.arboreum_cottongen_reftransV1_0019635; Name=g.arboreum_cottongen_reftransV1_0019635; organism=Gossypium arboreum; type=contig; length=1706bp
TTTTTATGGGCTTTTGAGAACGTTTGCTGAATGGAATGGGCAAGGATGTT
GGAGTCCCTTCTTGGAAGCATTCACTCCGGCATGTACTCGTGGCAACATT
ATCTTCCTTCCTCTATGGTTATCATCTTGGAGTAGTTAATGAAACACTAG
AAAGTATTTCACGTGACCTTGGTTTTCATGGGAATACCATGGCTGAAGGT
CTGGTTGTAAGTACATGTTTAGGGGGTGCCTTTGTTGGATCGCTGTTCAG
TGGTTTGATTGCAGACGGAGTTGGGCGTCGCAGGGCACTCCAGCTATGTG
CTTTGCCTATGATAATTGGGGCTTCAATGAGTGCAGCAGCAAAAAGCCTT
TGGGCCATGCTTCTGGGGAGGTTATTTGTGGGGACTGGAATGGGTATTGG
CCCAGCTGTGGCAGCTCTTTATGTGACAGAGGTTTCTCCAGCTTATGTAA
GAGGTACATATGGAAGCTTCACTCAAATTGCAACAGGCCTAGGATTGATG
GGCTCTCTATTTATTGGATTCCCTGCTAAGGCAATCGAGGGTTGGTGGCG
CATATGTTTCTGGGCATCTGTTGCTCCTGCTGCTATACTTGCTCTTTTTA
TGGAGTTTTCTGTAGAGAGTCCCCATTGGCTTTTTAAGAGAGGAAGAGCT
GCTGATGCTGAAGCTGAGTTTGAAAAACTTTTGGGAGGACCATATGTCAA
AAGTGCAATGGCTGAATTGTCAAAGTCAGACAGAGGGGATGAGGCAGATA
CATTCAAGTTCTCAGAGCTACTTTATGGCCATCATCGTAAAGTTGTTTTC
ATTGGGTCTACCCTTTTTGCTTTACAACAGCTCTCTGGTATAAATGCTGT
TTTCTATTTCTCGTCAACTGTCTTTGAAACTGCTGGCGTACCTTCAGAGT
CTGCAAACATGTGTGTGGGAATTGCCAATTTGTTAGGATCATTTGTTGCA
ATGATTTTGATGGATAGACTGGGAAGGAAGGTACTTCTCATTGGAAGCTT
TTCAGGCATGGTAGTGGCAATGTTTCTTCAGATAACTTCAGCTACTTCCT
TAGTCTCAAGAGGCAGTGGAGTTTATCTCTCTGTTGGAGGCATGCTTTTG
TTTGTCTTGACCTTCGCTATTGGAGCTGGACCAGTCCCTAGTATCCTACT
ATCAGAAATGTTTCCTGGTCGGGTTAGGGCAAATGCAGTGTCAGTTTGCA
TGGCTTTCCATTGGATTGTAAATTTCTTTGTCGGGCTGTTCTTTTTGCGG
TTACTGGAACAGATTGGACCATTAGTCCTGAATTCAATTTTCGGTGCCTT
TTGTCTGCTGGCAGTACTTTTTATAAAGAAAAATGTGTTGGAAACAAAAG
GAAAATCACTTCAAGAGATTGAAATTGCACTTCTTCCATCAGAATAGAGG
GCGCTTCGGGATATAAGTATTTCATTGCACCAATATCTTCTGCCGCTAAT
CCTGCCGGCTTATCAATCTGAAAGATGCAGACCTTGGTAAATGATGTCAT
AGATGGATCATAGCGAAAAGAACACATTCATCAGGTGCTCACTCTCCTAG
CCCATGTAACTCTAAGAGAAATTATTTTATTGTTTCCTTGAATACTGAAT
TACTACATTTCCTGGCGGAGAAATTAATATAGCATATACGGGGATTCACT
TTGGATGATATGTTTTTAACTTCTAATCAGGATGGAACGTCACATTTTGA
GTTGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003663Sugar/inositol_transpt
IPR005828MFS_sugar_transport-like
IPR005829Sugar_transporter_CS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022891substrate-specific transmembrane transporter activity
GO:0022857transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral to membrane