g.arboreum_cottongen_reftransV1_0006030, g.arboreum_cottongen_reftransV1_0006030 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006030
Unique Nameg.arboreum_cottongen_reftransV1_0006030
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0006030:1..1156 .
Chr11:96770821..96773398 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A022PUD5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003240mg PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 2.135e-111
Identity = 169/255 (66.27%), Postives = 209/255 (81.96%), Query Frame = -2
Query:  391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155
            VASG +D +DAVSEAG+IILP P E D E K E I  +  D +P E  +KWP KPG    D FD EDSW+D+PPEGF+LTLS F+TM+ +LF WI+SSSLAYIYG++E FHE+YLS+NGREYP KI++ DGRS+E+K TLAGC++RALP +V+ +R+P P+ST+EQGMGRLLDTMSF +ALP FRMKQWQV+ LL +DALSV RIPAL+P+MT  R+LL KVL+GAQI++EE+E+MKDLIIPLGR P FS QSG 
Sbjct:  348 VASGKTDASDAVSEAGVIILPPPHEVD-EAKYEQIGEV-VDVDPIE--LKWPPKPGFSSEDLFDSEDSWYDSPPEGFNLTLSPFSTMFMSLFAWISSSSLAYIYGKEERFHEDYLSINGREYPPKIII-DGRSAEVKHTLAGCLARALPGLVSEIRIPTPVSTIEQGMGRLLDTMSFTDALPGFRMKQWQVIALLFLDALSVSRIPALSPYMTGRRILLPKVLEGAQINVEEFEIMKDLIIPLGRVPQFSTQSGG 597          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: K4B1D1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g101010.2 PE=4 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 6.349e-110
Identity = 170/255 (66.67%), Postives = 204/255 (80.00%), Query Frame = -2
Query:  391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155
            VASG SDV DAVS+AG++ILP   E D+    E  + L+     E  P+KWP KPG+P  D F+ EDSW+D+PPEGF++TLS F TM+N+LF WI+SSSLA+IYG DE+ +EEYLS+NGREYP+KIVL DGRS+EIK+TLAGC++RALP +V  LRLP+PISTLEQGM  LL+TMSFV+ LPAFRMKQWQ++VLL +DALSVCRIP LTP+MT  R    KVLDGAQIS  EYE+MKDLIIPLGR P FS QSG 
Sbjct:  411 VASG-SDVPDAVSKAGIVILPPSQEVDEAILQETDEMLDL----ETAPLKWPRKPGMPNYDVFESEDSWYDSPPEGFNMTLSPFGTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSGG 660          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: M1BJZ7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018251 PE=4 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 2.624e-109
Identity = 170/255 (66.67%), Postives = 203/255 (79.61%), Query Frame = -2
Query:  391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155
            VASG SDV DAVS+AG++ILP   E D E  ++  + L+ +P     P+KWP KPG+P  D F+ ED W+D PPEGF++TLS FATM+N+LF WI+SSSLA+IYG DE  +EEYLS+NGREYP KIVL DG S+EIK+TLAGC++RALP +V  LRLP+PISTLEQGM  LL+TMSFV+ LPAFRMKQWQ++VLL +DALSVCRIP LTP+MT  R  L KVLDGAQIS  EYE+MKDLIIPLGR P FS QSG 
Sbjct:  414 VASG-SDVPDAVSKAGIVILPTSQEVD-EAILQETEMLDIEP----APLKWPRKPGMPNYDVFESEDCWYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKIVLSDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPKVLDGAQISTAEYEIMKDLIIPLGRVPQFSMQSGG 662          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A067DQT9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0087651mg PE=4 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 5.792e-103
Identity = 152/221 (68.78%), Postives = 182/221 (82.35%), Query Frame = -2
Query:  493 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHK 1155
            V SGDSDV DAVSEAG+IILP P +  + E +E+ D LE    PE   +KWP+KPGIPRS+ FDPEDSW+D PPEGFSLTLS FATMW A+F WI+SSSLAYIYGRDE+FHEEYLSVNGREY QKI++ DG SS IK+TL+GC++R  PA+V  LRL IP+STLE+G+  LL+TMSF++ LPAF++KQWQV+ +L +DALSVCRIPALTPHMTN  MLL K
Sbjct:  181 VMSGDSDVADAVSEAGVIILPSPRDGHEGESMEDPDVLE----PEAALLKWPSKPGIPRSELFDPEDSWYDEPPEGFSLTLSPFATMWMAIFAWISSSSLAYIYGRDESFHEEYLSVNGREYSQKIIMGDGHSSAIKQTLSGCLARTFPALVADLRLRIPVSTLEKGLEGLLNTMSFIDPLPAFKVKQWQVITVLFLDALSVCRIPALTPHMTNRTMLLRK 397          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A0A0KVU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009360 PE=4 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.966e-102
Identity = 154/255 (60.39%), Postives = 196/255 (76.86%), Query Frame = -2
Query:  391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155
            + SG S+V+DAVSEAG+IILPHP +A++E   + ++  E     E+       K G+ RSD FDP DSW+DAPPEGFSLTLS+FATMW A+F W+TSSSLAYIYG+D+ FHEE+L ++G+EYP KIV  DGRSSEIK+TLAGC++RA+P + + L L  PIS LE GM  LLDTM+F++ALPAFRMKQWQV+VLL I+ALSV RIP+L  HM++ R L HKVLD AQI  +EYE+M+D I+PLGR    S ++ A
Sbjct:  413 ITSGQSEVSDAVSEAGIIILPHPSDANEEASTDPVNASEPHSFSEKS-----NKLGVLRSDLFDPSDSWYDAPPEGFSLTLSSFATMWMAIFAWVTSSSLAYIYGKDDKFHEEFLYIDGKEYPSKIVSADGRSSEIKQTLAGCLTRAIPGLASELNLSTPISRLENGMAHLLDTMTFLDALPAFRMKQWQVIVLLFIEALSVSRIPSLASHMSSSRNLYHKVLDRAQIRSDEYEIMRDHILPLGRTAQLSDENDA 662          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ARATH (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.875e-92
Identity = 143/255 (56.08%), Postives = 197/255 (77.25%), Query Frame = -2
Query:  391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155
            V+SG+SD +DA ++AG+I+LP   + D+E   E+ +    + EP    +KWP KPGIP SD FD + SWFD PPEGF+LTLS FA MW++LF W++SSSLAYIYG++E+ HEE+L VNG+EYP++I++ DG SSEIK+T+AGC++RALP +VT LRLPI IS LE+G+G LL+TMS   A+P+FR+K+W V+VLL +DALSV RIP + P+++N      K+L+G+ I  EEYE MKD+++PLGR P F+ +SGA
Sbjct:  487 VSSGNSDASDATAKAGIILLPSTHQLDEEVTEEHSEEEMTEEEPT--LLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISN----RDKILEGSGIGNEEYETMKDILLPLGRVPQFATRSGA 735          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSI (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. indica GN=OsI_18345 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.870e-78
Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2
Query:  403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155
            ++SG S+V DAVS+AG+IILP  +   +     + D    + E    + G VKWP K  +  +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+  E+ L   GRE PQK VL DG SSEI+  L  C+  ALP +V+ LR+ IP+S LE  +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+    A
Sbjct:  470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722          
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSJ (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. japonica GN=Os05g0134300 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.970e-78
Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2
Query:  403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155
            ++SG S+V DAVS+AG+IILP  +   +     + D    + E    + G VKWP K  +  +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+  E+ L   GRE PQK VL DG SSEI+  L  C+  ALP +V+ LR+ IP+S LE  +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+    A
Sbjct:  470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022PUD5_ERYGU2.135e-11166.27Uncharacterized protein OS=Erythranthe guttata GN=... [more]
K4B1D1_SOLLC6.349e-11066.67Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1BJZ7_SOLTU2.624e-10966.67Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A067DQT9_CITSI5.792e-10368.78Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A0A0A0KVU3_CUCSA1.966e-10260.39Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPAP2_ARATH3.875e-9256.08Putative RNA polymerase II subunit B1 CTD phosphat... [more]
RPAP2_ORYSI1.870e-7851.97Putative RNA polymerase II subunit B1 CTD phosphat... [more]
RPAP2_ORYSJ1.970e-7851.97Putative RNA polymerase II subunit B1 CTD phosphat... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14732UNCHARACTERIZEDcoord: 16..239
NoneNo IPR availablePANTHERPTHR14732:SF0RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATEDcoord: 16..239

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006030 ID=g.arboreum_cottongen_reftransV1_0006030; Name=g.arboreum_cottongen_reftransV1_0006030; organism=Gossypium arboreum; type=contig; length=1156bp
TTTAAGTCCAAAATAGTTTATTTCAACAAGTAAAGTCATAATATCACCCA
ATTTATTTCCAAAAACCATGGGCAATTTGATACATCTAAACTATACGCAA
CATCCTCAACAAACATATATATAAACTGTATCTGCATTTGCATTTGTAAT
TCAGTTTTTGTTTTTGAACAAGAAATACCTTTCACTTTACAAGCATCGAA
ATTCGATTAAATTTGAACAATCAACTCCGTAATCAACAATGAGCCGAATT
TGTTAGCACGTATAGTTCCTTCACTCCAAGCAAAACCTTTGAGATGATTC
CATTGGCGATCATCAGATTTTGCAACTTCTCAGTAGATACTAATCATAAG
GAAACAGAATTTCCACAATGACTACAAATCACACCACTCAAGCTCCACTC
TGTGCAGAAAAGTGAGGTGCTCGGCCAAGTGGTATTATTAGATCCTTCAT
AACCTCATATTCTTCCAAACTTATCTGGGCACCATCCAGCACCTTGTGAA
GAAGCATCCTCCCATTAGTCATGTGTGGAGTGAGGGCTGGTATTCTACAA
ACTGAAAGGGCGTCAATTAATAGAAGAACAAGTACTTGCCACTGTTTCAT
TCTGAATGCTGGAAGTGCTTCCACAAAAGACATTGTATCTAGCAGGCGGC
CCATTCCCTGCTCCAAAGTAGATATCGGTATAGGCAGTCTGAGAGCAGTA
ACAATAGCAGGTAAAGCACGAGAAATACAACCAGCAAGAGTTTCTTTAAT
TTCAGAAGAACGACCATCTCGTAAGACAATCTTCTGCGGATACTCCCTCC
CATTAACTGACAGGTACTCTTCATGGAAAGTTTCATCTCTCCCATATATA
TAAGCCAAAGAAGATGATGTTATCCATTCAAAAAGCGCATTCCACATTGT
TGCAAAAGTTGACAGAGTTAAACTGAAACCCTCAGGGGGAGCATCAAACC
ACGAGTCCTCTGGGTCAAAAAAATCAGAGCGTGGAATCCCAGGTTTTGTT
GGCCACTTTACAGGGCCTTCTTCTGGTTCAGGATCTGCTTCAAGGGTATC
AATATTCTCCACTTTCTCCTCCTTGTCCGCCTCAAGTGGATGTGGCAATA
TGATCAGCCCAGCTTCAGAAACAGCATCATTGACATCAGAATCTCCAGAT
GCCACA
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