g.arboreum_cottongen_reftransV1_0006030, g.arboreum_cottongen_reftransV1_0006030 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A022PUD5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003240mg PE=4 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 2.135e-111 Identity = 169/255 (66.27%), Postives = 209/255 (81.96%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG +D +DAVSEAG+IILP P E D E K E I + D +P E +KWP KPG D FD EDSW+D+PPEGF+LTLS F+TM+ +LF WI+SSSLAYIYG++E FHE+YLS+NGREYP KI++ DGRS+E+K TLAGC++RALP +V+ +R+P P+ST+EQGMGRLLDTMSF +ALP FRMKQWQV+ LL +DALSV RIPAL+P+MT R+LL KVL+GAQI++EE+E+MKDLIIPLGR P FS QSG Sbjct: 348 VASGKTDASDAVSEAGVIILPPPHEVD-EAKYEQIGEV-VDVDPIE--LKWPPKPGFSSEDLFDSEDSWYDSPPEGFNLTLSPFSTMFMSLFAWISSSSLAYIYGKEERFHEDYLSINGREYPPKIII-DGRSAEVKHTLAGCLARALPGLVSEIRIPTPVSTIEQGMGRLLDTMSFTDALPGFRMKQWQVIALLFLDALSVSRIPALSPYMTGRRILLPKVLEGAQINVEEFEIMKDLIIPLGRVPQFSTQSGG 597
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: K4B1D1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g101010.2 PE=4 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 6.349e-110 Identity = 170/255 (66.67%), Postives = 204/255 (80.00%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG SDV DAVS+AG++ILP E D+ E + L+ E P+KWP KPG+P D F+ EDSW+D+PPEGF++TLS F TM+N+LF WI+SSSLA+IYG DE+ +EEYLS+NGREYP+KIVL DGRS+EIK+TLAGC++RALP +V LRLP+PISTLEQGM LL+TMSFV+ LPAFRMKQWQ++VLL +DALSVCRIP LTP+MT R KVLDGAQIS EYE+MKDLIIPLGR P FS QSG Sbjct: 411 VASG-SDVPDAVSKAGIVILPPSQEVDEAILQETDEMLDL----ETAPLKWPRKPGMPNYDVFESEDSWYDSPPEGFNMTLSPFGTMFNSLFTWISSSSLAFIYGHDESNNEEYLSINGREYPRKIVLSDGRSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSFPKVLDGAQISAAEYEIMKDLIIPLGRVPQFSMQSGG 660
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: M1BJZ7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018251 PE=4 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 2.624e-109 Identity = 170/255 (66.67%), Postives = 203/255 (79.61%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG SDV DAVS+AG++ILP E D E ++ + L+ +P P+KWP KPG+P D F+ ED W+D PPEGF++TLS FATM+N+LF WI+SSSLA+IYG DE +EEYLS+NGREYP KIVL DG S+EIK+TLAGC++RALP +V LRLP+PISTLEQGM LL+TMSFV+ LPAFRMKQWQ++VLL +DALSVCRIP LTP+MT R L KVLDGAQIS EYE+MKDLIIPLGR P FS QSG Sbjct: 414 VASG-SDVPDAVSKAGIVILPTSQEVD-EAILQETEMLDIEP----APLKWPRKPGMPNYDVFESEDCWYDGPPEGFNMTLSPFATMFNSLFTWISSSSLAFIYGHDENNNEEYLSINGREYPHKIVLSDGLSTEIKQTLAGCLARALPGLVADLRLPVPISTLEQGMVLLLNTMSFVDPLPAFRMKQWQLIVLLFLDALSVCRIPTLTPYMTGRRTSLPKVLDGAQISTAEYEIMKDLIIPLGRVPQFSMQSGG 662
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A067DQT9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0087651mg PE=4 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 5.792e-103 Identity = 152/221 (68.78%), Postives = 182/221 (82.35%), Query Frame = -2 Query: 493 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHK 1155 V SGDSDV DAVSEAG+IILP P + + E +E+ D LE PE +KWP+KPGIPRS+ FDPEDSW+D PPEGFSLTLS FATMW A+F WI+SSSLAYIYGRDE+FHEEYLSVNGREY QKI++ DG SS IK+TL+GC++R PA+V LRL IP+STLE+G+ LL+TMSF++ LPAF++KQWQV+ +L +DALSVCRIPALTPHMTN MLL K Sbjct: 181 VMSGDSDVADAVSEAGVIILPSPRDGHEGESMEDPDVLE----PEAALLKWPSKPGIPRSELFDPEDSWYDEPPEGFSLTLSPFATMWMAIFAWISSSSLAYIYGRDESFHEEYLSVNGREYSQKIIMGDGHSSAIKQTLSGCLARTFPALVADLRLRIPVSTLEKGLEGLLNTMSFIDPLPAFKVKQWQVITVLFLDALSVCRIPALTPHMTNRTMLLRK 397
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A0A0KVU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009360 PE=4 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 1.966e-102 Identity = 154/255 (60.39%), Postives = 196/255 (76.86%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 + SG S+V+DAVSEAG+IILPHP +A++E + ++ E E+ K G+ RSD FDP DSW+DAPPEGFSLTLS+FATMW A+F W+TSSSLAYIYG+D+ FHEE+L ++G+EYP KIV DGRSSEIK+TLAGC++RA+P + + L L PIS LE GM LLDTM+F++ALPAFRMKQWQV+VLL I+ALSV RIP+L HM++ R L HKVLD AQI +EYE+M+D I+PLGR S ++ A Sbjct: 413 ITSGQSEVSDAVSEAGIIILPHPSDANEEASTDPVNASEPHSFSEKS-----NKLGVLRSDLFDPSDSWYDAPPEGFSLTLSSFATMWMAIFAWVTSSSLAYIYGKDDKFHEEFLYIDGKEYPSKIVSADGRSSEIKQTLAGCLTRAIPGLASELNLSTPISRLENGMAHLLDTMTFLDALPAFRMKQWQVIVLLFIEALSVSRIPSLASHMSSSRNLYHKVLDRAQIRSDEYEIMRDHILPLGRTAQLSDENDA 662
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ARATH (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 3.875e-92 Identity = 143/255 (56.08%), Postives = 197/255 (77.25%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 V+SG+SD +DA ++AG+I+LP + D+E E+ + + EP +KWP KPGIP SD FD + SWFD PPEGF+LTLS FA MW++LF W++SSSLAYIYG++E+ HEE+L VNG+EYP++I++ DG SSEIK+T+AGC++RALP +VT LRLPI IS LE+G+G LL+TMS A+P+FR+K+W V+VLL +DALSV RIP + P+++N K+L+G+ I EEYE MKD+++PLGR P F+ +SGA Sbjct: 487 VSSGNSDASDATAKAGIILLPSTHQLDEEVTEEHSEEEMTEEEPT--LLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISN----RDKILEGSGIGNEEYETMKDILLPLGRVPQFATRSGA 735
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSI (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. indica GN=OsI_18345 PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.870e-78 Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2 Query: 403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155 ++SG S+V DAVS+AG+IILP + + + D + E + G VKWP K + +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+ E+ L GRE PQK VL DG SSEI+ L C+ ALP +V+ LR+ IP+S LE +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+ A Sbjct: 470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSJ (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. japonica GN=Os05g0134300 PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.970e-78 Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2 Query: 403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155 ++SG S+V DAVS+AG+IILP + + + D + E + G VKWP K + +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+ E+ L GRE PQK VL DG SSEI+ L C+ ALP +V+ LR+ IP+S LE +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+ A Sbjct: 470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006030 ID=g.arboreum_cottongen_reftransV1_0006030; Name=g.arboreum_cottongen_reftransV1_0006030; organism=Gossypium arboreum; type=contig; length=1156bpback to top |