g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0A0LWI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050050 PE=4 SV=1) HSP 1 Score: 494.197 bits (1271), Expect = 2.120e-159 Identity = 240/286 (83.92%), Postives = 262/286 (91.61%), Query Frame = 2 Query: 2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLAL 859 GFCPRK RPVQK VWQSGEYYTFQ+FEAKAK+FE++YLKK +KKG LS LE+ETL+W+AT+DKP VEYANDMPGSAFVP++ K REAGEG T+GET WNMR VSRAKGSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR+ GYGGE NPLVTF+ LGEKTTVMSPEV + AG+PCCRLVQNAGEFVVTFPRAYH+GFSHGFN GEAANIATPEWL VA+DAAIRRASINYPPMVSH+QLLYDLAL Sbjct: 98 GFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCTKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAK----MFREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLNVAKDAAIRRASINYPPMVSHYQLLYDLAL 379
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: D7LRW5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485204 PE=4 SV=1) HSP 1 Score: 488.804 bits (1257), Expect = 1.231e-158 Identity = 237/290 (81.72%), Postives = 260/290 (89.66%), Query Frame = 2 Query: 2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871 GFCPRK RPVQ+PVWQSGE Y+F EFE KAK+FE+NYLKK KK LSALE+ETL+W+ATVDKP VEYANDMPGSAF+PL+ ++ GEG TVGET WNMRA+SRA+GSLL+FMKEEIPGVTSPMVYIAM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVP+DAAVAFEEVVR+ GYGGE NPLVTFSTLGEKTTVMSPEVF+ AGIPCCRLVQN G+FVVTFP AYHSGFSHGFNFGEA+NIATPEWLR+A+DAAIRRA+INYPPMVSH QLLYD AL L S Sbjct: 104 GFCPRKQRPVQRPVWQSGEEYSFGEFEFKAKNFEKNYLKKCGKKSQLSALEIETLYWRATVDKPFSVEYANDMPGSAFIPLSLA-AARRRESGGEGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTFSTLGEKTTVMSPEVFVKAGIPCCRLVQNPGDFVVTFPGAYHSGFSHGFNFGEASNIATPEWLRMAKDAAIRRAAINYPPMVSHLQLLYDFALALGS 392
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: V4LPK0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010066mg PE=4 SV=1) HSP 1 Score: 486.878 bits (1252), Expect = 1.051e-157 Identity = 233/290 (80.34%), Postives = 261/290 (90.00%), Query Frame = 2 Query: 2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871 GFCPRK RPVQ+PVWQSGE+Y+F EFE KAK+FE+NYL+K K+ LSALE+ETL+W+ATVDKP VEYANDMPGSAF+PL+ ++ G+G TVGET WNMRA++RA+GSLL+FMKEEIPGVTSPMVYIAM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVP+DAAVAFEEVVR+ GYGGE NPLVTFSTLGEKTTVMSPEVF+ AGIPCCRLVQN GEFVVTFP AYHSGFSHGFNFGEA+NIATP+WLR+A+DAAIRRA+INYPPMVSH QLLYD AL L S Sbjct: 105 GFCPRKQRPVQRPVWQSGEHYSFGEFEFKAKNFEKNYLRKCGKRSQLSALEIETLYWRATVDKPFSVEYANDMPGSAFIPLSLA-AARRRESGGDGGTVGETAWNMRAMARAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTFSTLGEKTTVMSPEVFVRAGIPCCRLVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPQWLRMAKDAAIRRAAINYPPMVSHLQLLYDFALALGS 393
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A072V0U6_MEDTR (Lysine-specific demethylase REF6-like protein, putative OS=Medicago truncatula GN=MTR_3g075210 PE=4 SV=1) HSP 1 Score: 486.108 bits (1250), Expect = 3.640e-156 Identity = 231/290 (79.66%), Postives = 250/290 (86.21%), Query Frame = 2 Query: 2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871 GFCPRKPRPV++PVWQSG++YTF EFEAKAK FER+Y+ K KK + SALE+ETLFWKATVDKP VEYANDMPGSAF + ++V + WNMR VSRAKGSLLRFMKEEIPGVTSPMVY+AMLFSWFAWHVEDHDLHSLNYLHMGA KTWYGVPRDAAVAFE+VVR+ GYGGE NPLVTFS LGEKTTVMSPEVF+ AG+PCCRLVQNAGEFVVTFPRAYH+GFSHGFN EAANIATPEWLRVA+DAAIRRASINY PMVSH QLLYDLAL LCS Sbjct: 83 GFCPRKPRPVKRPVWQSGDHYTFSEFEAKAKWFERSYMNK-KKKNSNSALEIETLFWKATVDKPFSVEYANDMPGSAF-------ADTVENNNKPFSSVANSTWNMRRVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVAKDAAIRRASINYSPMVSHLQLLYDLALALCS 364
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: V4TIR4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018473mg PE=4 SV=1) HSP 1 Score: 486.493 bits (1251), Expect = 7.235e-156 Identity = 230/291 (79.04%), Postives = 252/291 (86.60%), Query Frame = 2 Query: 2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKY-SKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871 GFCPRKPRPVQKPVWQSGEYYTFQEFE KAK+FE++YLKK +KK LSALE+E+L+WKA+VDKP VEYANDMPGSAFVP+ + + G PWNMR VSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWH EDHDLHSLNYLHMGA KTWYGVP +AA AFEEVVR+ GYG E NPLVTF+TLGEKTT++SPEVF+ AG+PCCRLVQNAGEFVVTFPRAYH GFSHGFN GEAANIATPEWL +A+DAAIRRASINYPPMVSHFQLLYDLA+ + S Sbjct: 98 GFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGET-----PWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHS 383
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_CANFA (Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.139e-41 Identity = 99/274 (36.13%), Postives = 140/274 (51.09%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALE-VETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV-RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ + YT Q F A SF+ +Y +S + E VE FW+ +++++ VEY D+ F P SS E WN+ + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV+ RL + P L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 380 QATQEYTLQSFGEMADSFKADY---FSMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSSSQRILSPEEEEYATSG-WNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEQLEEVMKRLTPELFDSQP----DLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 645
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JM703_ORYSJ (Lysine-specific demethylase JMJ703 OS=Oryza sativa subsp. japonica GN=JMJ703 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 9.070e-41 Identity = 103/283 (36.40%), Postives = 144/283 (50.88%), Query Frame = 2 Query: 44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALE-VETLFWKATVDKPAM---VEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR--LDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862 ++ G +T Q F+ A F + Y +K + ++ ++E +E +W+ V+ P V Y D+ GS F L+P+ S + + WN+ + R +GS+L F +I GV P VY+ M FS F WHVEDH L+SLNY+H GA K WYGVP AV E +R L E L L T SP + G+ R VQ+ GEFV+TFPRAYH+GF+ GFN EA N+A +WL + +A +SH +LL A E Sbjct: 264 FEPGPEFTLQTFQKYADDFSKQYFRKDTSMDSVPSVEDIEGEYWR-IVEVPTEEIEVIYGADLETGTFGSGFPKLSPETKSDAEDKYAQSG------WNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDL-----LHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAARE 534
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_PANTR (Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.132e-40 Identity = 98/279 (35.13%), Postives = 143/279 (51.25%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ + YT Q F A SF+ +Y LE E FW+ +++++ VEY D+ GS F N K++ + E + WN+ + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV+++ P + S L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 377 QATQEYTLQSFGEMADSFKSDYFNMPVHMVPTELLEKE--FWRLVSSIEEDVTVEYGADIHYKEFGSGFPVSNSKQN-----LSPEEKEYATSGWNLNVMPVLAQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKM------LTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 642
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_MOUSE (Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.346e-40 Identity = 98/276 (35.51%), Postives = 140/276 (50.72%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAF---VPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV-RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ + YT Q F A SF+ +Y +E E FW+ +++++ VEY D+ F P+N K E A WN+ + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA E+V+ RL + P L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL V R + + SH +L+ +A Sbjct: 386 QATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVVEKE--FWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWDLSPEEKEYAACG----WNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEDVMKRLTPELFDSQP----DLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPVGRQCIEHYRRLRRYCVFSHEELICKMA 651
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ14_ARATH (Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 4.338e-40 Identity = 98/286 (34.27%), Postives = 145/286 (50.70%), Query Frame = 2 Query: 44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSA---------LEVETLFWKATVDKPAMVE--YANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV--RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862 +Q+G +T +EF+ + F+ Y + G+ ++ ++E +W+ VE Y D+ F PK G + + WN+ +SR GS+L F +I GV P +Y+ M FS F WHVEDH L+S+NYLH G K WYG+P + A +FE V+ RL E L L + T +SP + G+P R VQ +GEF++TFP+AYHSGF+ GFN EA N+A +WL ++A + +SH +LL A+E Sbjct: 171 FQTGPDFTLEEFQKYDEYFKECYFQSEDHPGSKASENKKFKPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCG--WNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDL-----LHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAME 449
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_HUMAN (Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 8.014e-40 Identity = 96/279 (34.41%), Postives = 143/279 (51.25%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ + Y+ Q F A SF+ +Y +E E FW+ +++++ VEY D+ GS F N K++ + E + WN+ + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV+++ P + S L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 377 QATQEYSLQSFGEMADSFKSDYFNMPVHMVPTELVEKE--FWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQN-----LSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKM------LTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 642
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ18_ARATH (Lysine-specific demethylase JMJ18 OS=Arabidopsis thaliana GN=JMJ18 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 8.644e-40 Identity = 104/296 (35.14%), Postives = 145/296 (48.99%), Query Frame = 2 Query: 20 PRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTL-----SALEVETLFWKATVDKPA---MVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRL---DGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862 P +K + SG +T EFE A F+ +Y +K G + S ++E +W+ V++P V Y D+ GS F K + + WN+ + R GS+L F +I GV P +Y+ M FS F WHVEDH L+SLNY H G K WYGVP A A E+ +R D + E P L T SP + G+ R+VQN+GE+V+TFPRAYH+GF+ GFN EA N+A +WL ++A + +SH +LL A E Sbjct: 165 PEAEEKFGFNSGSDFTLDEFEKYALHFKDSYFEKKDSGGDIVKWTPSVDDIEGEYWR-IVEQPTDEVEVYYGADLENGVLGSGFYKRAEKFTGSDMEQYTLSG------WNLNNLPRLPGSVLSFEDCDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYHHFGEPKVWYGVPGSNATALEKAMRKHLPDLF--EEQP----DLLHGLVTQFSPSILKDEGVQAYRVVQNSGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSKETRKTSLSHDKLLLGAAYE 447
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_MOUSE (Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4) HSP 1 Score: 151.754 bits (382), Expect = 5.330e-39 Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKA--TVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ YT Q F A SF+ +Y +E E FW+ ++++ VEY D+ F P S E WN+ + + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV++ + P + S L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_HUMAN (Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 6.776e-39 Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ YT Q F A SF+ +Y +E E FW+ ++++ VEY D+ F P S E WN+ + + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV++ + P + S L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_CANFA (Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 9.421e-39 Identity = 95/275 (34.55%), Postives = 137/275 (49.82%), Query Frame = 2 Query: 47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856 Q+ YT Q F A SF+ +Y +E E FW+ ++++ VEY D+ F P S E + WN+ + + S+L + +I G+ P +Y+ M+FS F WH+EDH +S+NYLH G KTWYGVP AA EEV++ + P + S L + T+M+P + G+P R Q AGEFV+TFPRAYHSGF+ G+NF EA N T +WL R + + SH +L+ +A Sbjct: 387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPV-SDNKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014585 ID=g.arboreum_cottongen_reftransV1_0014585; Name=g.arboreum_cottongen_reftransV1_0014585; organism=Gossypium arboreum; type=contig; length=873bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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