g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014585
Unique Nameg.arboreum_cottongen_reftransV1_0014585
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length873
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0014585:1..873 .
Chr1:64976587..64980402 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A067D210_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039624mg PE=4 SV=1)

HSP 1 Score: 479.945 bits (1234), Expect = 2.349e-165
Identity = 230/291 (79.04%), Postives = 252/291 (86.60%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKY-SKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFE KAK+FE++YLKK  +KK  LSALE+E+L+WKA+VDKP  VEYANDMPGSAFVP+   + + G             PWNMR VSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWH EDHDLHSLNYLHMGA KTWYGVP +AA AFEEVVR+ GYG E NPLVTF+TLGEKTT++SPEVF+ AG+PCCRLVQNAGEFVVTFPRAYH GFSHGFN GEAANIATPEWL +A+DAAIRRASINYPPMVSHFQLLYDLA+ + S
Sbjct:   98 GFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGET-----PWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHS 383          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A087G846_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AA8G196500 PE=4 SV=1)

HSP 1 Score: 479.559 bits (1233), Expect = 5.470e-165
Identity = 229/290 (78.97%), Postives = 260/290 (89.66%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPVQ+PVWQSGE+Y+F EFE KAK+FE+NYLKK SKK  LSALE+ETL+WKATVDKP  VEYANDMPGSAF+PL+   ++      G+  TVGE+PWNMRA++RA+GSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGA KTWYGVP+DAAVAFEEVVR+ GYGGE NPLVT STLGEKTTVMSPEVF+ AGIPCCRLVQN G+FV+TFP+AYHSGFSHGFN GEA+NIATPEWLR+A+DAAIRRA+++YPPMVSH QLLYD AL L S
Sbjct:  104 GFCPRKQRPVQRPVWQSGEHYSFGEFEYKAKTFEKNYLKKCSKKSQLSALEMETLYWKATVDKPFSVEYANDMPGSAFIPLS-LAAARRRESGGDVGTVGESPWNMRAMARAEGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTISTLGEKTTVMSPEVFVKAGIPCCRLVQNPGDFVITFPKAYHSGFSHGFNCGEASNIATPEWLRMAKDAAIRRAAVSYPPMVSHLQLLYDFALALGS 392          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: B9I3K5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09390g PE=4 SV=2)

HSP 1 Score: 508.449 bits (1308), Expect = 8.313e-164
Identity = 246/290 (84.83%), Postives = 263/290 (90.69%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGE YTFQEFE KAKSFE+NYLKK+SKKG LS LE+E L+WKAT+DKP  VEYANDMPGSAF   +P+K  G G   GEG  VGET WNMR+VSRAKGSLLRFMKEEIPGVTSPMVYI M+FSWFAWHVEDHDLHSLNY+HMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTF+ LGEKTTVMSPEVF+ AG+PCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWL VA+DAAIRRASINYPPMVSHFQLLYDLALE C+
Sbjct:  102 GFCPRKPRPVQKPVWQSGETYTFQEFETKAKSFEKNYLKKFSKKGGLSPLEIENLYWKATLDKPFAVEYANDMPGSAF---SPRKKEGQGGVVGEGMYVGETEWNMRSVSRAKGSLLRFMKEEIPGVTSPMVYIGMIFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRVHGYGGENNPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLALEFCT 388          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: B9IF38_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10040g PE=4 SV=2)

HSP 1 Score: 506.523 bits (1303), Expect = 2.367e-163
Identity = 243/290 (83.79%), Postives = 264/290 (91.03%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGE YTFQEFE KA++FE+NYLKK+ KKG LS LE+ETL+WKAT+DKP  VEYANDMPGSAF   +P+K  G G  AGEG +VG+T WNMR VSRAKGSLLRFMKEEIPGVTSPMVY+ M+FSWFAWHVEDHDLHSLNY+HMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTF+ LGEKTTVMSPEVF+ AG+PCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWL VA+DAAIRRASINYPPMVSHFQLLYDLALE C+
Sbjct:  102 GFCPRKPRPVQKPVWQSGETYTFQEFETKARTFEKNYLKKFFKKGALSPLEIETLYWKATLDKPFSVEYANDMPGSAF---SPRKKEGQGGVAGEGMSVGDTEWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVGMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLMVAKDAAIRRASINYPPMVSHFQLLYDLALEFCT 388          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A067KFE5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11361 PE=4 SV=1)

HSP 1 Score: 509.99 bits (1312), Expect = 6.850e-163
Identity = 244/290 (84.14%), Postives = 258/290 (88.97%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGE YTFQEFE KAKSFE++YLKK SKKG LS LE+ETL+WKATVDKP  VEYANDMPGSAF   + KK+ G     G      E  WNMR VSR+KGSLLRFMKEEIPGVTSPMVY+AMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTF  LGEKTTVMSPEVF+ AG+PCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLALELC+
Sbjct:  103 GFCPRKPRPVQKPVWQSGENYTFQEFETKAKSFEKSYLKKGSKKGALSPLEIETLYWKATVDKPFSVEYANDMPGSAF---SHKKTGGKELGEGVTVGETE--WNMRGVSRSKGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGETNPLVTFQVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALELCT 387          

HSP 2 Score: 64.3142 bits (155), Expect = 3.420e-8
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 2
Query:  785 AAIRRASINYPPMVSHFQLLYDLALELCS 871
            AAIRRASINYPPMVSHFQLLYDLALELC+
Sbjct:  620 AAIRRASINYPPMVSHFQLLYDLALELCT 648          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: B9RAP0_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1507500 PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 8.986e-161
Identity = 247/290 (85.17%), Postives = 260/290 (89.66%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGE YTFQEFEAKAKSFE++Y KK  KK   S LEVETL+WKATVDKP  VEYANDMPGSAF      K   GG+E  EG TVGET WNMR VSRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLH+GAGKTWYGVP++AAVAFEEVVR  GYGGE NPLVTFS LGEKTTVMSPEVF+ AG+PCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLALELC+
Sbjct:  103 GFCPRKPRPVQKPVWQSGENYTFQEFEAKAKSFEKSYFKKCPKKTAFSPLEVETLYWKATVDKPFSVEYANDMPGSAFSV----KKMSGGKEIIEGVTVGETEWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHLGAGKTWYGVPKEAAVAFEEVVRDHGYGGEINPLVTFSVLGEKTTVMSPEVFVTAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALELCT 388          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: D7LRW6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906087 PE=4 SV=1)

HSP 1 Score: 494.197 bits (1271), Expect = 1.362e-160
Identity = 238/290 (82.07%), Postives = 261/290 (90.00%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPVQ+PVWQSGE+Y+F EFEAKAK+FE+NYLKK  KK  LSALE+ETL+W+ATVDKP  VEYANDMPGSAF+PL+   ++      G+G TVGET WNMRA+SRA+GSLL+FMKEEIPGVTSPMVYIAM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVP+DAAVAFEEVVR+ GYGGE NPLVT STLGEKTTVMSPEVF+ AGIPCCRLVQN GEFVVTFPRAYHSGFSHGFN GEA+NIATPEWLRVA+DAAIRRA+INYPPMVSH QLLYD AL L S
Sbjct:  104 GFCPRKQRPVQRPVWQSGEHYSFGEFEAKAKTFEKNYLKKCGKKSQLSALEIETLYWRATVDKPFSVEYANDMPGSAFIPLSLA-AARRREYGGDGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTISTLGEKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRAAINYPPMVSHLQLLYDYALALGS 392          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: K4BK22_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g111590.2 PE=4 SV=1)

HSP 1 Score: 490.345 bits (1261), Expect = 4.184e-160
Identity = 235/290 (81.03%), Postives = 258/290 (88.97%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV+KPVWQSGE YT Q+F+ KAK+FE+NYL+K SK+  L+ LEVETL+WKATVDKP  VEYANDMPGSAF P   KK+S      GE +T+ +T WNMR VSR+KGSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMG+GKTWYGVPRDAAVAFEEV+R+ GY GE NPLVTF+TLGEKTTVMSPEV L AGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEA+NIATPEWLRVA+DAAIRRASIN PPMVSHFQLLYDLAL LCS
Sbjct:   91 GFCPRKHRPVKKPVWQSGETYTVQQFQVKAKAFEKNYLRKNSKRA-LTPLEVETLYWKATVDKPFSVEYANDMPGSAFAP---KKASLAAGGIGEVSTLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVIRVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRASINCPPMVSHFQLLYDLALSLCS 376          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: V4M0K3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010068mg PE=4 SV=1)

HSP 1 Score: 491.886 bits (1265), Expect = 7.446e-160
Identity = 234/290 (80.69%), Postives = 261/290 (90.00%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPVQ+PVWQSGE+Y+F EFE KAK+FE+NYL+K  KK  LSALE+ETL+W+ATVDKP  VEYANDMPGSAF+PL+   ++      G+G TVGET WNMRA++RA+GSLL+FMKEEIPGVTSPMVYIAM+FSWFAWHVEDHDLHSLNYLHMGA KTWYGVP+DAAVAFEEVVR+ GYGGE NPLVTFSTLG+KTTVMSPEVF+ AGIPCCRLVQN GEFVVTFPRAYHSGFSHGFN GEA+NIATPEWLR+A+DAAIRRA+INYPPMVSH QLLYD AL LCS
Sbjct:  103 GFCPRKQRPVQRPVWQSGEHYSFGEFEFKAKNFEKNYLRKCGKKSQLSALEIETLYWRATVDKPFSVEYANDMPGSAFIPLSLA-AARRRESGGDGGTVGETAWNMRAMARAEGSLLKFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPKDAAVAFEEVVRVHGYGGELNPLVTFSTLGDKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEASNIATPEWLRIAKDAAIRRAAINYPPMVSHLQLLYDFALALCS 391          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: M1B7Y2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015167 PE=4 SV=1)

HSP 1 Score: 489.189 bits (1258), Expect = 1.156e-159
Identity = 234/290 (80.69%), Postives = 258/290 (88.97%), Query Frame = 2
Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV+KPVWQSGE YT Q+F+AKAK+FE+NYL+K SK+  L+ LEVETL+WKATVDKP  VEYANDMPGSAF P   KK+S      GE +T+ +T WNMR VSR+KGSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMG+GKTWYGVPRDAAVAFEEV+R+ GY GE NPLVTF+TLGEKTTVMSPEV L AGIPCCRLVQNAGEFVVTFP+AYHSGFSHGFN GEA+NIATPEWLRVA+DAAIRRAS N PPMVSHFQLLYDLAL LCS
Sbjct:   91 GFCPRKHRPVKKPVWQSGETYTVQQFQAKAKAFEKNYLRKNSKRA-LTPLEVETLYWKATVDKPFSVEYANDMPGSAFAP---KKASLAAGGIGEVSTLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVIRVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGEFVVTFPQAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRASTNCPPMVSHFQLLYDLALSLCS 376          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_PIG (Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.114e-38
Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2
Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT Q F   A SF+ +Y            +E E  FW+   ++++   VEY  D+    F    P   S       E        WN+  +   + S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  346 QATREYTLQSFGEMADSFKADYSNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 611          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ16_ARATH (Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.991e-38
Identity = 112/294 (38.10%), Postives = 146/294 (49.66%), Query Frame = 2
Query:   44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLS-------------ALE-VETLFWKATVDKPAM---VEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRL---DGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALEL 865
            ++ G  +T ++F+  A  F+  Y KK S+  T               ALE VE  +W+  VDK      V Y  D+    F    PK SS     + E        WN+    R  GSLL++   +I GV  P +YI M FS F WHVEDH L+SLNY+H GA K WYGV    AV  EE +R    D +  E  P      L +  T +SP     AG+P  R VQ+AGEFV+TFPRAYH+GF+ GFN  EA N+A  +WL   + A            +SH +LL   A E+
Sbjct:  264 FEPGPGFTLKDFQKYADEFKAQYFKK-SETSTDDKCKVDNSIDCWEPALEDVEGEYWR-IVDKATEEIEVLYGADLETGVFGSGFPKISSSHNASSSEDKYAKSG-WNLNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVGGKDAVKLEEAMRKHLPDLF--EEQP----DLLHKLVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREV 548          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KD5BB_DANRE (Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.225e-37
Identity = 91/277 (32.85%), Postives = 139/277 (50.18%), Query Frame = 2
Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862
            Q+   YT + F   A SF+ +Y            +E E  FW+   T+ +   VEY  D+    F    P K         +   +    WN+  ++    S+L  +  +I G+T P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYG P  AA   E V++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPR+YHSGF+ GFNF EA N  T +W+ + R        ++   + SH +++ ++A++
Sbjct:  358 QAHRDYTLKAFGEMADSFKSDYFNMPVHMVPTELVEKE--FWRLVGTIQEDVTVEYGADIASKEFGSGFPIKGGRFKIAPHDEKYLQCG-WNLNNMAMMTPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEAVMK------KLAPELFDSQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCAGEFVITFPRSYHSGFNQGFNFAEAVNFCTVDWMPLGRQCVDHYRQLHRYCVFSHDEMVCNMAMK 625          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5B_CHICK (Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.699e-37
Identity = 92/273 (33.70%), Postives = 137/273 (50.18%), Query Frame = 2
Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR-LDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT + F   A +F+ +Y            +E E  FW+  +T+++   VEY  D+    F    P +         E   +    WN+  +   + S+L  +  +I G+  P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYG P  AA   E+V++ L     E  P      L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ GFNF EA N  T +WL + R        ++   + SH +++  +A
Sbjct:  347 QAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKE--FWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKFKVRPEEEEYLDSG-WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELFESQP----DLLHQLVTIMNPNTLMAHGVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCIEHYRLLSRYCVFSHDEMICKMA 612          
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5B_MOUSE (Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.102e-36
Identity = 92/272 (33.82%), Postives = 134/272 (49.26%), Query Frame = 2
Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLY 847
            Q+   YT + F   A +F+ +Y            +E E  FW+  +T+++   VEY  D+    F    P +         E   +    WN+  +   + S+L  +  +I G+  P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   E V++      +  P +  S    L +  T+M+P   +   +P  R  Q AGEFV+TFPRAYHSGF+ GFNF EA N  T +WL + R              V H++LL+
Sbjct:  372 QAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKE--FWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSG-WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMK------KLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQC------------VEHYRLLH 622          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067D210_CITSI2.349e-16579.04Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A0A087G846_ARAAL5.470e-16578.97Uncharacterized protein (Fragment) OS=Arabis alpin... [more]
B9I3K5_POPTR8.313e-16484.83Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9IF38_POPTR2.367e-16383.79Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067KFE5_JATCU6.850e-16384.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9RAP0_RICCO8.986e-16185.17Nucleic acid binding protein, putative OS=Ricinus ... [more]
D7LRW6_ARALL1.362e-16082.07Putative uncharacterized protein OS=Arabidopsis ly... [more]
K4BK22_SOLLC4.184e-16081.03Uncharacterized protein OS=Solanum lycopersicum GN... [more]
V4M0K3_EUTSA7.446e-16080.69Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
M1B7Y2_SOLTU1.156e-15980.69Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
KDM5C_PIG1.114e-3834.55Lysine-specific demethylase 5C OS=Sus scrofa GN=KD... [more]
JMJ16_ARATH4.991e-3838.10Putative lysine-specific demethylase JMJ16 OS=Arab... [more]
KD5BB_DANRE2.225e-3732.85Lysine-specific demethylase 5B-B OS=Danio rerio GN... [more]
KDM5B_CHICK4.699e-3733.70Lysine-specific demethylase 5B OS=Gallus gallus GN... [more]
KDM5B_MOUSE1.102e-3633.82Lysine-specific demethylase 5B OS=Mus musculus GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003347JmjC domainSMARTSM00558cupin_9coord: 61..230
e-value: 8.1E-48
score: 174.9
IPR003347JmjC domainPFAMPF02373JmjCcoord: 94..213
e-value: 2.9E-36
score: 124.3
IPR003347JmjC domainPROSITEPS51184JMJCcoord: 61..230
score: 33.284
NoneNo IPR availablePANTHERPTHR10694:SF38LYSINE-SPECIFIC DEMETHYLASE REF6coord: 1..253
NoneNo IPR availablePANTHERPTHR10694JUMONJI DOMAIN CONTAINING PROTEINcoord: 1..253
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 107..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..106
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 75..246

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014585 ID=g.arboreum_cottongen_reftransV1_0014585; Name=g.arboreum_cottongen_reftransV1_0014585; organism=Gossypium arboreum; type=contig; length=873bp
CGGGTTTTGCCCCAGAAAGCCCCGACCTGTTCAGAAACCGGTATGGCAAA
GTGGGGAGTACTATACTTTCCAAGAATTCGAAGCTAAAGCCAAAAGTTTC
GAAAGGAATTACTTGAAAAAATACAGCAAGAAGGGTACCCTTTCAGCTTT
AGAAGTTGAAACCCTTTTTTGGAAAGCAACGGTTGATAAACCTGCCATGG
TTGAGTATGCTAATGACATGCCTGGTTCAGCTTTTGTGCCATTGAACCCA
AAGAAGAGTAGTGGAGGAGGGAGGGAAGCAGGGGAAGGGGCTACAGTAGG
AGAAACACCTTGGAATATGAGAGCTGTTTCGAGGGCTAAAGGGTCATTGT
TAAGGTTCATGAAGGAGGAGATTCCGGGGGTTACTTCCCCTATGGTGTAC
ATTGCAATGTTGTTCAGTTGGTTCGCTTGGCATGTTGAGGATCATGACTT
GCATAGCTTGAATTATTTGCATATGGGTGCAGGGAAGACTTGGTATGGTG
TGCCGAGGGACGCTGCGGTTGCTTTTGAGGAGGTCGTCAGGCTTGATGGC
TATGGAGGAGAGTTCAATCCTCTTGTTACCTTTTCTACACTCGGTGAGAA
GACCACAGTGATGTCTCCTGAAGTATTTCTTCATGCCGGTATACCATGCT
GCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTCCCGAGAGCT
TATCATTCAGGGTTCAGTCATGGTTTTAACTTTGGCGAGGCGGCTAATAT
TGCAACTCCGGAATGGTTGAGAGTGGCCAGAGATGCTGCTATTCGAAGAG
CTTCAATCAATTACCCTCCGATGGTCTCTCATTTCCAGTTACTTTACGAT
CTTGCACTTGAATTATGTTCAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom