g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0014585
Unique Name	g.arboreum_cottongen_reftransV1_0014585
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	873

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0014585:1..873 . Chr1:64976587..64980402 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0B0MHK5_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_11209 PE=4 SV=1)

HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGATVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  103 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGATVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 392

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0D2LVF4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G061900 PE=4 SV=1)

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  103 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 392

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FZ67_THECC (Relative of early flowering 6, putative isoform 3 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FYM0_THECC (Relative of early flowering 6, putative isoform 1 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FZP0_THECC (Relative of early flowering 6, putative isoform 2 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0B0P356_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_05499 PE=4 SV=1)

HSP 1 Score: 548.125 bits (1411), Expect = 3.259e-179
Identity = 268/290 (92.41%), Postives = 277/290 (95.52%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV K VWQSGEYYTFQEFEAKAK+FERNYLKKYSKKG+LSALE+ETLFWKATVD+P  +EYANDMPGSAF  L+ KKSSGGGRE GEG TV ETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR+DGY GEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLAL+LCS
Sbjct:  102 GFCPRKQRPVLKSVWQSGEYYTFQEFEAKAKNFERNYLKKYSKKGSLSALEIETLFWKATVDQPFDIEYANDMPGSAFAALSSKKSSGGGRETGEGVTVAETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVDGYAGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNLGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALDLCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0D2S311_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G270100 PE=4 SV=1)

HSP 1 Score: 544.273 bits (1401), Expect = 1.198e-177
Identity = 266/290 (91.72%), Postives = 274/290 (94.48%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV K VWQSGEYYTFQEFEAKAK FERNYLKKYSKK +LSALE+ETLFWKATVD+P  +EYANDMPGSAF  L  KKSSGGGRE GEG TV ETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR+DGY GEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVARDA+IRRASINYPPMVSHFQLLYDLAL+LCS
Sbjct:  102 GFCPRKQRPVLKSVWQSGEYYTFQEFEAKAKIFERNYLKKYSKKASLSALEIETLFWKATVDQPFDIEYANDMPGSAFAALGSKKSSGGGRETGEGVTVAETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVDGYAGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNLGEAANIATPEWLRVARDASIRRASINYPPMVSHFQLLYDLALDLCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: F6GTM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09980 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 3.456e-167
Identity = 252/290 (86.90%), Postives = 268/290 (92.41%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPV+KPVWQSGEYYTFQEFEAKA++FE+NYLKK SKK  LSALE+ETLFWKA+VDKP  VEYANDMPGSAFVP++ KK     REAGE  TVGET WNMR +SRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTF+ LGEKTTVMSPEVF+ AGIPCCRLVQN GEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLAL LCS
Sbjct:   99 GFCPRKPRPVKKPVWQSGEYYTFQEFEAKARAFEKNYLKKSSKK-PLSALEIETLFWKASVDKPFSVEYANDMPGSAFVPVSSKK----WREAGEAVTVGETAWNMRGISRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFVSAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCS 383

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: W9S5V7_9ROSA (Lysine-specific demethylase REF6 OS=Morus notabilis GN=L484_008190 PE=4 SV=1)

HSP 1 Score: 512.301 bits (1318), Expect = 1.770e-166
Identity = 242/290 (83.45%), Postives = 261/290 (90.00%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQ+PVWQSGE YTFQ+FEAKAK FER++ K+ +KKG LS LE+ETL+WKATVDKP  VEYANDMPGSAFVP++ K+S   G  A  G T     WNMRAVSRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTFS LGEKTTVMSPEVF+ AG+PCCRLVQN GEFVVTFPRAYH+GFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLAL LCS
Sbjct:  103 GFCPRKPRPVQRPVWQSGENYTFQQFEAKAKGFERSFFKRCAKKGALSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVSAKRSREAGESATLGETA----WNMRAVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFVRAGVPCCRLVQNPGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCS 388

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: M1B7Y3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015167 PE=4 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 1.318e-165
Identity = 234/290 (80.69%), Postives = 258/290 (88.97%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV+KPVWQSGE YT Q+F+AKAK+FE+NYL+K SK+  L+ LEVETL+WKATVDKP  VEYANDMPGSAF P   KK+S      GE +T+ +T WNMR VSR+KGSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMG+GKTWYGVPRDAAVAFEEV+R+ GY GE NPLVTF+TLGEKTTVMSPEV L AGIPCCRLVQNAGEFVVTFP+AYHSGFSHGFN GEA+NIATPEWLRVA+DAAIRRAS N PPMVSHFQLLYDLAL LCS
Sbjct:   91 GFCPRKHRPVKKPVWQSGETYTVQQFQAKAKAFEKNYLRKNSKRA-LTPLEVETLYWKATVDKPFSVEYANDMPGSAFAP---KKASLAAGGIGEVSTLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVIRVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGEFVVTFPQAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRASTNCPPMVSHFQLLYDLALSLCS 376

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_PIG (Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.114e-38
Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT Q F   A SF+ +Y            +E E  FW+   ++++   VEY  D+    F    P   S       E        WN+  +   + S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  346 QATREYTLQSFGEMADSFKADYSNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 611

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ16_ARATH (Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana GN=JMJ16 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.991e-38
Identity = 112/294 (38.10%), Postives = 146/294 (49.66%), Query Frame = 2

Query:   44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLS-------------ALE-VETLFWKATVDKPAM---VEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRL---DGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALEL 865
            ++ G  +T ++F+  A  F+  Y KK S+  T               ALE VE  +W+  VDK      V Y  D+    F    PK SS     + E        WN+    R  GSLL++   +I GV  P +YI M FS F WHVEDH L+SLNY+H GA K WYGV    AV  EE +R    D +  E  P      L +  T +SP     AG+P  R VQ+AGEFV+TFPRAYH+GF+ GFN  EA N+A  +WL   + A            +SH +LL   A E+
Sbjct:  264 FEPGPGFTLKDFQKYADEFKAQYFKK-SETSTDDKCKVDNSIDCWEPALEDVEGEYWR-IVDKATEEIEVLYGADLETGVFGSGFPKISSSHNASSSEDKYAKSG-WNLNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVGGKDAVKLEEAMRKHLPDLF--EEQP----DLLHKLVTQLSPSKLKTAGVPVHRCVQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKLLLGAAREV 548

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KD5BB_DANRE (Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.225e-37
Identity = 91/277 (32.85%), Postives = 139/277 (50.18%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862
            Q+   YT + F   A SF+ +Y            +E E  FW+   T+ +   VEY  D+    F    P K         +   +    WN+  ++    S+L  +  +I G+T P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYG P  AA   E V++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPR+YHSGF+ GFNF EA N  T +W+ + R        ++   + SH +++ ++A++
Sbjct:  358 QAHRDYTLKAFGEMADSFKSDYFNMPVHMVPTELVEKE--FWRLVGTIQEDVTVEYGADIASKEFGSGFPIKGGRFKIAPHDEKYLQCG-WNLNNMAMMTPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEAVMK------KLAPELFDSQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCAGEFVITFPRSYHSGFNQGFNFAEAVNFCTVDWMPLGRQCVDHYRQLHRYCVFSHDEMVCNMAMK 625

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5B_CHICK (Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.699e-37
Identity = 92/273 (33.70%), Postives = 137/273 (50.18%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR-LDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT + F   A +F+ +Y            +E E  FW+  +T+++   VEY  D+    F    P +         E   +    WN+  +   + S+L  +  +I G+  P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYG P  AA   E+V++ L     E  P      L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ GFNF EA N  T +WL + R        ++   + SH +++  +A
Sbjct:  347 QAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKE--FWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKFKVRPEEEEYLDSG-WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELFESQP----DLLHQLVTIMNPNTLMAHGVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCIEHYRLLSRYCVFSHDEMICKMA 612

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5B_MOUSE (Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.102e-36
Identity = 92/272 (33.82%), Postives = 134/272 (49.26%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLY 847
            Q+   YT + F   A +F+ +Y            +E E  FW+  +T+++   VEY  D+    F    P +         E   +    WN+  +   + S+L  +  +I G+  P +Y+ M FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   E V++      +  P +  S    L +  T+M+P   +   +P  R  Q AGEFV+TFPRAYHSGF+ GFNF EA N  T +WL + R              V H++LL+
Sbjct:  372 QAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKE--FWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSG-WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMK------KLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQC------------VEHYRLLH 622

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0MHK5_GOSAR	0.000e+0	100.00	Lysine-specific demethylase REF6-like protein OS=G...	[more]
A0A0D2LVF4_GOSRA	0.000e+0	99.66	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FZ67_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 3 ...	[more]
A0A061FYM0_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 1 ...	[more]
A0A061FZP0_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 2 ...	[more]
A0A0B0P356_GOSAR	3.259e-179	92.41	Lysine-specific demethylase REF6-like protein OS=G...	[more]
A0A0D2S311_GOSRA	1.198e-177	91.72	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
F6GTM2_VITVI	3.456e-167	86.90	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9S5V7_9ROSA	1.770e-166	83.45	Lysine-specific demethylase REF6 OS=Morus notabili...	[more]
M1B7Y3_SOLTU	1.318e-165	80.69	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
KDM5C_PIG	1.114e-38	34.55	Lysine-specific demethylase 5C OS=Sus scrofa GN=KD...	[more]
JMJ16_ARATH	4.991e-38	38.10	Putative lysine-specific demethylase JMJ16 OS=Arab...	[more]
KD5BB_DANRE	2.225e-37	32.85	Lysine-specific demethylase 5B-B OS=Danio rerio GN...	[more]
KDM5B_CHICK	4.699e-37	33.70	Lysine-specific demethylase 5B OS=Gallus gallus GN...	[more]
KDM5B_MOUSE	1.102e-36	33.82	Lysine-specific demethylase 5B OS=Mus musculus GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003347	JmjC domain	SMART	SM00558	cupin_9	coord: 61..230 e-value: 8.1E-48 score: 174.9
IPR003347	JmjC domain	PFAM	PF02373	JmjC	coord: 94..213 e-value: 2.9E-36 score: 124.3
IPR003347	JmjC domain	PROSITE	PS51184	JMJC	coord: 61..230 score: 33.284
None	No IPR available	PANTHER	PTHR10694:SF38	LYSINE-SPECIFIC DEMETHYLASE REF6	coord: 1..253
None	No IPR available	PANTHER	PTHR10694	JUMONJI DOMAIN CONTAINING PROTEIN	coord: 1..253
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..253
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..106
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 75..246

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0014585 ID=g.arboreum_cottongen_reftransV1_0014585; Name=g.arboreum_cottongen_reftransV1_0014585; organism=Gossypium arboreum; type=contig; length=873bp
CGGGTTTTGCCCCAGAAAGCCCCGACCTGTTCAGAAACCGGTATGGCAAA
GTGGGGAGTACTATACTTTCCAAGAATTCGAAGCTAAAGCCAAAAGTTTC
GAAAGGAATTACTTGAAAAAATACAGCAAGAAGGGTACCCTTTCAGCTTT
AGAAGTTGAAACCCTTTTTTGGAAAGCAACGGTTGATAAACCTGCCATGG
TTGAGTATGCTAATGACATGCCTGGTTCAGCTTTTGTGCCATTGAACCCA
AAGAAGAGTAGTGGAGGAGGGAGGGAAGCAGGGGAAGGGGCTACAGTAGG
AGAAACACCTTGGAATATGAGAGCTGTTTCGAGGGCTAAAGGGTCATTGT
TAAGGTTCATGAAGGAGGAGATTCCGGGGGTTACTTCCCCTATGGTGTAC
ATTGCAATGTTGTTCAGTTGGTTCGCTTGGCATGTTGAGGATCATGACTT
GCATAGCTTGAATTATTTGCATATGGGTGCAGGGAAGACTTGGTATGGTG
TGCCGAGGGACGCTGCGGTTGCTTTTGAGGAGGTCGTCAGGCTTGATGGC
TATGGAGGAGAGTTCAATCCTCTTGTTACCTTTTCTACACTCGGTGAGAA
GACCACAGTGATGTCTCCTGAAGTATTTCTTCATGCCGGTATACCATGCT
GCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTCCCGAGAGCT
TATCATTCAGGGTTCAGTCATGGTTTTAACTTTGGCGAGGCGGCTAATAT
TGCAACTCCGGAATGGTTGAGAGTGGCCAGAGATGCTGCTATTCGAAGAG
CTTCAATCAATTACCCTCCGATGGTCTCTCATTTCCAGTTACTTTACGAT
CTTGCACTTGAATTATGTTCAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003347	JmjC_dom

Search form

g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum

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