g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0014585
Unique Name	g.arboreum_cottongen_reftransV1_0014585
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	873

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0014585:1..873 . Chr1:64976587..64980402 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0B0MHK5_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_11209 PE=4 SV=1)

HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGATVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  103 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGATVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 392

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0D2LVF4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G061900 PE=4 SV=1)

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  103 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 392

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FZ67_THECC (Relative of early flowering 6, putative isoform 3 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FYM0_THECC (Relative of early flowering 6, putative isoform 1 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A061FZP0_THECC (Relative of early flowering 6, putative isoform 2 OS=Theobroma cacao GN=TCM_014549 PE=4 SV=1)

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 278/290 (95.86%), Postives = 285/290 (98.28%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAK+FER YLK+YS+KG+LSALEVETLFWKATVDKP  VEYANDMPGSAFVPL+ KKSSGGGREAGEG TVGETPWNMRAVSRAKGSLLRFMK+EIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS
Sbjct:  102 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKNFERGYLKRYSRKGSLSALEVETLFWKATVDKPFSVEYANDMPGSAFVPLSSKKSSGGGREAGEGVTVGETPWNMRAVSRAKGSLLRFMKDEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0B0P356_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_05499 PE=4 SV=1)

HSP 1 Score: 548.125 bits (1411), Expect = 3.259e-179
Identity = 268/290 (92.41%), Postives = 277/290 (95.52%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV K VWQSGEYYTFQEFEAKAK+FERNYLKKYSKKG+LSALE+ETLFWKATVD+P  +EYANDMPGSAF  L+ KKSSGGGRE GEG TV ETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR+DGY GEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLAL+LCS
Sbjct:  102 GFCPRKQRPVLKSVWQSGEYYTFQEFEAKAKNFERNYLKKYSKKGSLSALEIETLFWKATVDQPFDIEYANDMPGSAFAALSSKKSSGGGRETGEGVTVAETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVDGYAGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNLGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALDLCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: A0A0D2S311_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G270100 PE=4 SV=1)

HSP 1 Score: 544.273 bits (1401), Expect = 1.198e-177
Identity = 266/290 (91.72%), Postives = 274/290 (94.48%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV K VWQSGEYYTFQEFEAKAK FERNYLKKYSKK +LSALE+ETLFWKATVD+P  +EYANDMPGSAF  L  KKSSGGGRE GEG TV ETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR+DGY GEFNPLVTFSTLGEKTTVMSPEVF+HAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVARDA+IRRASINYPPMVSHFQLLYDLAL+LCS
Sbjct:  102 GFCPRKQRPVLKSVWQSGEYYTFQEFEAKAKIFERNYLKKYSKKASLSALEIETLFWKATVDQPFDIEYANDMPGSAFAALGSKKSSGGGRETGEGVTVAETPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVDGYAGEFNPLVTFSTLGEKTTVMSPEVFVHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNLGEAANIATPEWLRVARDASIRRASINYPPMVSHFQLLYDLALDLCS 391

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: F6GTM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09980 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 3.456e-167
Identity = 252/290 (86.90%), Postives = 268/290 (92.41%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPV+KPVWQSGEYYTFQEFEAKA++FE+NYLKK SKK  LSALE+ETLFWKA+VDKP  VEYANDMPGSAFVP++ KK     REAGE  TVGET WNMR +SRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTF+ LGEKTTVMSPEVF+ AGIPCCRLVQN GEFVVTFPRAYHSGFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLAL LCS
Sbjct:   99 GFCPRKPRPVKKPVWQSGEYYTFQEFEAKARAFEKNYLKKSSKK-PLSALEIETLFWKASVDKPFSVEYANDMPGSAFVPVSSKK----WREAGEAVTVGETAWNMRGISRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFVSAGIPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCS 383

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: W9S5V7_9ROSA (Lysine-specific demethylase REF6 OS=Morus notabilis GN=L484_008190 PE=4 SV=1)

HSP 1 Score: 512.301 bits (1318), Expect = 1.770e-166
Identity = 242/290 (83.45%), Postives = 261/290 (90.00%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRKPRPVQ+PVWQSGE YTFQ+FEAKAK FER++ K+ +KKG LS LE+ETL+WKATVDKP  VEYANDMPGSAFVP++ K+S   G  A  G T     WNMRAVSRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPR+AAVAFEEVVR+ GYGGE NPLVTFS LGEKTTVMSPEVF+ AG+PCCRLVQN GEFVVTFPRAYH+GFSHGFN GEAANIATPEWLRVA+DAAIRRASINYPPMVSHFQLLYDLAL LCS
Sbjct:  103 GFCPRKPRPVQRPVWQSGENYTFQQFEAKAKGFERSFFKRCAKKGALSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVSAKRSREAGESATLGETA----WNMRAVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFVRAGVPCCRLVQNPGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCS 388

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Match: M1B7Y3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015167 PE=4 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 1.318e-165
Identity = 234/290 (80.69%), Postives = 258/290 (88.97%), Query Frame = 2

Query:    2 GFCPRKPRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALELCS 871
            GFCPRK RPV+KPVWQSGE YT Q+F+AKAK+FE+NYL+K SK+  L+ LEVETL+WKATVDKP  VEYANDMPGSAF P   KK+S      GE +T+ +T WNMR VSR+KGSLL+FMKEEIPGVTSPMVY+AM+FSWFAWHVEDHDLHSLNYLHMG+GKTWYGVPRDAAVAFEEV+R+ GY GE NPLVTF+TLGEKTTVMSPEV L AGIPCCRLVQNAGEFVVTFP+AYHSGFSHGFN GEA+NIATPEWLRVA+DAAIRRAS N PPMVSHFQLLYDLAL LCS
Sbjct:   91 GFCPRKHRPVKKPVWQSGETYTVQQFQAKAKAFEKNYLRKNSKRA-LTPLEVETLYWKATVDKPFSVEYANDMPGSAFAP---KKASLAAGGIGEVSTLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVIRVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGEFVVTFPQAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRASTNCPPMVSHFQLLYDLALSLCS 376

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_CANFA (Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.139e-41
Identity = 99/274 (36.13%), Postives = 140/274 (51.09%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALE-VETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV-RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+ + YT Q F   A SF+ +Y   +S    +   E VE  FW+  +++++   VEY  D+    F    P  SS       E        WN+  +     S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV+ RL     +  P      L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  380 QATQEYTLQSFGEMADSFKADY---FSMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSSSQRILSPEEEEYATSG-WNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEQLEEVMKRLTPELFDSQP----DLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 645

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JM703_ORYSJ (Lysine-specific demethylase JMJ703 OS=Oryza sativa subsp. japonica GN=JMJ703 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.070e-41
Identity = 103/283 (36.40%), Postives = 144/283 (50.88%), Query Frame = 2

Query:   44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALE-VETLFWKATVDKPAM---VEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVR--LDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862
            ++ G  +T Q F+  A  F + Y +K +   ++ ++E +E  +W+  V+ P     V Y  D+     GS F  L+P+  S    +  +        WN+  + R +GS+L F   +I GV  P VY+ M FS F WHVEDH L+SLNY+H GA K WYGVP   AV  E  +R  L     E   L     L    T  SP +    G+   R VQ+ GEFV+TFPRAYH+GF+ GFN  EA N+A  +WL +  +A            +SH +LL   A E
Sbjct:  264 FEPGPEFTLQTFQKYADDFSKQYFRKDTSMDSVPSVEDIEGEYWR-IVEVPTEEIEVIYGADLETGTFGSGFPKLSPETKSDAEDKYAQSG------WNLNNLPRLQGSVLSFEGGDISGVLVPWVYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDAVNLESAMRKHLPELFEEQPDL-----LHNLVTQFSPSLLKSEGVHVYRCVQHEGEFVLTFPRAYHAGFNCGFNCAEAVNVAPIDWLPIGHNAVELYREQARKITISHDKLLLGAARE 534

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_PANTR (Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.132e-40
Identity = 98/279 (35.13%), Postives = 143/279 (51.25%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+ + YT Q F   A SF+ +Y            LE E  FW+  +++++   VEY  D+     GS F   N K++      + E      + WN+  +     S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV+++        P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  377 QATQEYTLQSFGEMADSFKSDYFNMPVHMVPTELLEKE--FWRLVSSIEEDVTVEYGADIHYKEFGSGFPVSNSKQN-----LSPEEKEYATSGWNLNVMPVLAQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKM------LTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 642

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_MOUSE (Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.346e-40
Identity = 98/276 (35.51%), Postives = 140/276 (50.72%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAF---VPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV-RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+ + YT Q F   A SF+ +Y            +E E  FW+  +++++   VEY  D+    F    P+N  K      E    A      WN+  +     S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   E+V+ RL     +  P      L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL V R        +    + SH +L+  +A
Sbjct:  386 QATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVVEKE--FWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWDLSPEEKEYAACG----WNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEDVMKRLTPELFDSQP----DLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPVGRQCIEHYRRLRRYCVFSHEELICKMA 651

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ14_ARATH (Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.338e-40
Identity = 98/286 (34.27%), Postives = 145/286 (50.70%), Query Frame = 2

Query:   44 WQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSA---------LEVETLFWKATVDKPAMVE--YANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVV--RLDGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862
            +Q+G  +T +EF+   + F+  Y +     G+ ++          ++E  +W+        VE  Y  D+    F    PK   G      +  +     WN+  +SR  GS+L F   +I GV  P +Y+ M FS F WHVEDH L+S+NYLH G  K WYG+P + A +FE V+  RL     E   L     L +  T +SP +    G+P  R VQ +GEF++TFP+AYHSGF+ GFN  EA N+A  +WL   ++A    +       +SH +LL   A+E
Sbjct:  171 FQTGPDFTLEEFQKYDEYFKECYFQSEDHPGSKASENKKFKPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCG--WNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDL-----LHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAME 449

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5D_HUMAN (Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.014e-40
Identity = 96/279 (34.41%), Postives = 143/279 (51.25%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+ + Y+ Q F   A SF+ +Y            +E E  FW+  +++++   VEY  D+     GS F   N K++      + E      + WN+  +     S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV+++        P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  377 QATQEYSLQSFGEMADSFKSDYFNMPVHMVPTELVEKE--FWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQN-----LSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKM------LTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 642

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: JMJ18_ARATH (Lysine-specific demethylase JMJ18 OS=Arabidopsis thaliana GN=JMJ18 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.644e-40
Identity = 104/296 (35.14%), Postives = 145/296 (48.99%), Query Frame = 2

Query:   20 PRPVQKPVWQSGEYYTFQEFEAKAKSFERNYLKKYSKKGTL-----SALEVETLFWKATVDKPA---MVEYANDMP----GSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRL---DGYGGEFNPLVTFSTLGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLALE 862
            P   +K  + SG  +T  EFE  A  F+ +Y +K    G +     S  ++E  +W+  V++P     V Y  D+     GS F     K +     +           WN+  + R  GS+L F   +I GV  P +Y+ M FS F WHVEDH L+SLNY H G  K WYGVP   A A E+ +R    D +  E  P      L    T  SP +    G+   R+VQN+GE+V+TFPRAYH+GF+ GFN  EA N+A  +WL   ++A    +       +SH +LL   A E
Sbjct:  165 PEAEEKFGFNSGSDFTLDEFEKYALHFKDSYFEKKDSGGDIVKWTPSVDDIEGEYWR-IVEQPTDEVEVYYGADLENGVLGSGFYKRAEKFTGSDMEQYTLSG------WNLNNLPRLPGSVLSFEDCDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYHHFGEPKVWYGVPGSNATALEKAMRKHLPDLF--EEQP----DLLHGLVTQFSPSILKDEGVQAYRVVQNSGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSKETRKTSLSHDKLLLGAAYE 447

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_MOUSE (Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 5.330e-39
Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWKA--TVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT Q F   A SF+ +Y            +E E  FW+   ++++   VEY  D+    F    P   S       E        WN+  +   + S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_HUMAN (Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.776e-39
Identity = 95/275 (34.55%), Postives = 136/275 (49.45%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT Q F   A SF+ +Y            +E E  FW+   ++++   VEY  D+    F    P   S       E        WN+  +   + S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSG-WNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Match: KDM5C_CANFA (Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.421e-39
Identity = 95/275 (34.55%), Postives = 137/275 (49.82%), Query Frame = 2

Query:   47 QSGEYYTFQEFEAKAKSFERNYLKKYSKKGTLSALEVETLFWK--ATVDKPAMVEYANDMPGSAFVPLNPKKSSXXXXXXXXXXXXXXXPWNMRAVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRLDGYGGEFNPLVTFST---LGEKTTVMSPEVFLHAGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNFGEAANIATPEWLRVARDAAIRRASINYPPMVSHFQLLYDLA 856
            Q+   YT Q F   A SF+ +Y            +E E  FW+   ++++   VEY  D+    F    P  S        E      + WN+  +   + S+L  +  +I G+  P +Y+ M+FS F WH+EDH  +S+NYLH G  KTWYGVP  AA   EEV++      +  P +  S    L +  T+M+P   +  G+P  R  Q AGEFV+TFPRAYHSGF+ G+NF EA N  T +WL   R        +    + SH +L+  +A
Sbjct:  387 QATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKE--FWRLVNSIEEDVTVEYGADIHSKEFGSGFPV-SDNKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMK------KLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMA 652

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0MHK5_GOSAR	0.000e+0	100.00	Lysine-specific demethylase REF6-like protein OS=G...	[more]
A0A0D2LVF4_GOSRA	0.000e+0	99.66	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FZ67_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 3 ...	[more]
A0A061FYM0_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 1 ...	[more]
A0A061FZP0_THECC	0.000e+0	95.86	Relative of early flowering 6, putative isoform 2 ...	[more]
A0A0B0P356_GOSAR	3.259e-179	92.41	Lysine-specific demethylase REF6-like protein OS=G...	[more]
A0A0D2S311_GOSRA	1.198e-177	91.72	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
F6GTM2_VITVI	3.456e-167	86.90	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9S5V7_9ROSA	1.770e-166	83.45	Lysine-specific demethylase REF6 OS=Morus notabili...	[more]
M1B7Y3_SOLTU	1.318e-165	80.69	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0014585 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
KDM5D_CANFA	6.139e-41	36.13	Lysine-specific demethylase 5D OS=Canis familiaris...	[more]
JM703_ORYSJ	9.070e-41	36.40	Lysine-specific demethylase JMJ703 OS=Oryza sativa...	[more]
KDM5D_PANTR	1.132e-40	35.13	Lysine-specific demethylase 5D OS=Pan troglodytes ...	[more]
KDM5D_MOUSE	2.346e-40	35.51	Lysine-specific demethylase 5D OS=Mus musculus GN=...	[more]
JMJ14_ARATH	4.338e-40	34.27	Probable lysine-specific demethylase JMJ14 OS=Arab...	[more]
KDM5D_HUMAN	8.014e-40	34.41	Lysine-specific demethylase 5D OS=Homo sapiens GN=...	[more]
JMJ18_ARATH	8.644e-40	35.14	Lysine-specific demethylase JMJ18 OS=Arabidopsis t...	[more]
KDM5C_MOUSE	5.330e-39	34.55	Lysine-specific demethylase 5C OS=Mus musculus GN=...	[more]
KDM5C_HUMAN	6.776e-39	34.55	Lysine-specific demethylase 5C OS=Homo sapiens GN=...	[more]
KDM5C_CANFA	9.421e-39	34.55	Lysine-specific demethylase 5C OS=Canis familiaris...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003347	JmjC domain	SMART	SM00558	cupin_9	coord: 61..230 e-value: 8.1E-48 score: 174.9
IPR003347	JmjC domain	PFAM	PF02373	JmjC	coord: 94..213 e-value: 2.9E-36 score: 124.3
IPR003347	JmjC domain	PROSITE	PS51184	JMJC	coord: 61..230 score: 33.284
None	No IPR available	PANTHER	PTHR10694:SF38	LYSINE-SPECIFIC DEMETHYLASE REF6	coord: 1..253
None	No IPR available	PANTHER	PTHR10694	JUMONJI DOMAIN CONTAINING PROTEIN	coord: 1..253
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..86
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 107..253
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 87..106
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 75..246

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0014585 ID=g.arboreum_cottongen_reftransV1_0014585; Name=g.arboreum_cottongen_reftransV1_0014585; organism=Gossypium arboreum; type=contig; length=873bp
CGGGTTTTGCCCCAGAAAGCCCCGACCTGTTCAGAAACCGGTATGGCAAA
GTGGGGAGTACTATACTTTCCAAGAATTCGAAGCTAAAGCCAAAAGTTTC
GAAAGGAATTACTTGAAAAAATACAGCAAGAAGGGTACCCTTTCAGCTTT
AGAAGTTGAAACCCTTTTTTGGAAAGCAACGGTTGATAAACCTGCCATGG
TTGAGTATGCTAATGACATGCCTGGTTCAGCTTTTGTGCCATTGAACCCA
AAGAAGAGTAGTGGAGGAGGGAGGGAAGCAGGGGAAGGGGCTACAGTAGG
AGAAACACCTTGGAATATGAGAGCTGTTTCGAGGGCTAAAGGGTCATTGT
TAAGGTTCATGAAGGAGGAGATTCCGGGGGTTACTTCCCCTATGGTGTAC
ATTGCAATGTTGTTCAGTTGGTTCGCTTGGCATGTTGAGGATCATGACTT
GCATAGCTTGAATTATTTGCATATGGGTGCAGGGAAGACTTGGTATGGTG
TGCCGAGGGACGCTGCGGTTGCTTTTGAGGAGGTCGTCAGGCTTGATGGC
TATGGAGGAGAGTTCAATCCTCTTGTTACCTTTTCTACACTCGGTGAGAA
GACCACAGTGATGTCTCCTGAAGTATTTCTTCATGCCGGTATACCATGCT
GCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTCCCGAGAGCT
TATCATTCAGGGTTCAGTCATGGTTTTAACTTTGGCGAGGCGGCTAATAT
TGCAACTCCGGAATGGTTGAGAGTGGCCAGAGATGCTGCTATTCGAAGAG
CTTCAATCAATTACCCTCCGATGGTCTCTCATTTCCAGTTACTTTACGAT
CTTGCACTTGAATTATGTTCAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003347	JmjC_dom

Search form

g.arboreum_cottongen_reftransV1_0014585, g.arboreum_cottongen_reftransV1_0014585 (contig) Gossypium arboreum

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