g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000951
Unique Nameg.arboreum_cottongen_reftransV1_0000951
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length348
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0A0LBH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183300 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.734e-24
Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCF--GSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+T  K+RWGSCWS YWCF  GS +S+KRIGHAVLVPE  VPG    A ++ +  T ++LPFIAPPSSPASFL S+P S TQSPAGLLSL +LSVN YSP GPASIFAIGPY ++TQ
Sbjct:   26 QPTTPPKRRWGSCWSLYWCFGIGSQKSNKRIGHAVLVPEPAVPGAVAPAVEHRTPSTTMVLPFIAPPSSPASFLQSEPTSNTQSPAGLLSLTALSVNNYSPNGPASIFAIGPYTYDTQ 143          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9RCD8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687100 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.327e-23
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    7 STVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASN--PTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            +T+QK+RWGSCWS YWCFG HR  KRIGHAVLVPE   PG    AA+N +   PT I LPF+APPSSPASFL S+PPSA+QSPAG+LSL S+S + YSP GPASIFAIGPYAHETQ
Sbjct:   38 ATIQKRRWGSCWSVYWCFGYHRHRKRIGHAVLVPENSAPGNDSSAAENPTTQAPT-ITLPFVAPPSSPASFLQSEPPSASQSPAGILSLTSVSASMYSPSGPASIFAIGPYAHETQ 152          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A068UU07_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_62 OS=Coffea canephora GN=GSCOC_T00035404001 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.364e-22
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1
Query:   13 VQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            VQK+RW SCWS YWCFGS++ +KRIGHAVLVPE + P     A +N +    + LPFIAPPSSPASFL S+PPSATQSP GLLSL S+S + YSP GPAS+FAIGPYAHETQ
Sbjct:   42 VQKRRWASCWSLYWCFGSYKHTKRIGHAVLVPEPIAPRADPPAVENQTQAASVALPFIAPPSSPASFLQSEPPSATQSPPGLLSLTSMSASMYSPGGPASMFAIGPYAHETQ 153          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067JZI1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20571 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.211e-21
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1
Query:    7 STVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            +TVQK+RWGSC+S YWCFG +R  KRIGHAVLVPE   P     AA+N++    I LPF+APPSSPASFL S+PPSA+QSP G+LSL S+S N YSP GP+SIFAIGPYAHETQ
Sbjct:   35 ATVQKRRWGSCFSVYWCFGYNRHRKRIGHAVLVPETPGPRNDSSAAENSTQTPTITLPFVAPPSSPASFLQSEPPSASQSPTGVLSLTSISANMYSPSGPSSIFAIGPYAHETQ 148          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A058ZYM8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00281 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.222e-21
Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 1
Query:   28 WGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            WGSCWS YWCFG  +++KRIGHAVL+P+ +  G A  AA+N +  T I+LPF APPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSPRGPASIFA+GPYA+ETQ
Sbjct:   70 WGSCWSIYWCFGHQKNNKRIGHAVLLPDPVTLGNAAPAAENQATSTAIVLPFNAPPSSPASFLPSDPPSATQSPAGLLSLTSLSINAYSPRGPASIFAVGPYAYETQ 176          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0LBH0_CUCSA7.734e-2468.64Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
B9RCD8_RICCO4.327e-2371.55Putative uncharacterized protein OS=Ricinus commun... [more]
A0A068UU07_COFCA5.364e-2268.75Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A067JZI1_JATCU1.211e-2168.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A058ZYM8_EUCGR1.222e-2173.83Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31798FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR31798:SF4SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bp
CAGCCTTCAACCGTTCAGAAGAAAAGATGGGGAAGCTGCTGGAGTTTTTA
CTGGTGTTTTGGATCTCACAGAAGCAGTAAGCGAATAGGTCATGCTGTTC
TTGTCCCCGAAGCATTGGTACCTGGAGTTGCAGTTGTAGCTGCACAAAAT
GCAAGTAATCCAACTGGCATTCTATTGCCCTTTATTGCCCCTCCCTCATC
TCCTGCATCATTTCTCCTATCAGATCCTCCTTCTGCCACCCAGTCGCCTG
CTGGATTGCTATCCCTAGCATCGCTTTCAGTTAATGCCTACTCCCCCCGT
GGACCTGCATCTATTTTTGCCATTGGCCCTTATGCACATGAAACCCAG
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