g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0A0LBH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183300 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.734e-24 Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCF--GSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+T K+RWGSCWS YWCF GS +S+KRIGHAVLVPE VPG A ++ + T ++LPFIAPPSSPASFL S+P S TQSPAGLLSL +LSVN YSP GPASIFAIGPY ++TQ Sbjct: 26 QPTTPPKRRWGSCWSLYWCFGIGSQKSNKRIGHAVLVPEPAVPGAVAPAVEHRTPSTTMVLPFIAPPSSPASFLQSEPTSNTQSPAGLLSLTALSVNNYSPNGPASIFAIGPYTYDTQ 143
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9RCD8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687100 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.327e-23 Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1 Query: 7 STVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASN--PTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 +T+QK+RWGSCWS YWCFG HR KRIGHAVLVPE PG AA+N + PT I LPF+APPSSPASFL S+PPSA+QSPAG+LSL S+S + YSP GPASIFAIGPYAHETQ Sbjct: 38 ATIQKRRWGSCWSVYWCFGYHRHRKRIGHAVLVPENSAPGNDSSAAENPTTQAPT-ITLPFVAPPSSPASFLQSEPPSASQSPAGILSLTSVSASMYSPSGPASIFAIGPYAHETQ 152
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A068UU07_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_62 OS=Coffea canephora GN=GSCOC_T00035404001 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 5.364e-22 Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 13 VQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 VQK+RW SCWS YWCFGS++ +KRIGHAVLVPE + P A +N + + LPFIAPPSSPASFL S+PPSATQSP GLLSL S+S + YSP GPAS+FAIGPYAHETQ Sbjct: 42 VQKRRWASCWSLYWCFGSYKHTKRIGHAVLVPEPIAPRADPPAVENQTQAASVALPFIAPPSSPASFLQSEPPSATQSPPGLLSLTSMSASMYSPGGPASMFAIGPYAHETQ 153
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067JZI1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20571 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.211e-21 Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1 Query: 7 STVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 +TVQK+RWGSC+S YWCFG +R KRIGHAVLVPE P AA+N++ I LPF+APPSSPASFL S+PPSA+QSP G+LSL S+S N YSP GP+SIFAIGPYAHETQ Sbjct: 35 ATVQKRRWGSCFSVYWCFGYNRHRKRIGHAVLVPETPGPRNDSSAAENSTQTPTITLPFVAPPSSPASFLQSEPPSASQSPTGVLSLTSISANMYSPSGPSSIFAIGPYAHETQ 148
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A058ZYM8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00281 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.222e-21 Identity = 79/107 (73.83%), Postives = 91/107 (85.05%), Query Frame = 1 Query: 28 WGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 WGSCWS YWCFG +++KRIGHAVL+P+ + G A AA+N + T I+LPF APPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSPRGPASIFA+GPYA+ETQ Sbjct: 70 WGSCWSIYWCFGHQKNNKRIGHAVLLPDPVTLGNAAPAAENQATSTAIVLPFNAPPSSPASFLPSDPPSATQSPAGLLSLTSLSINAYSPRGPASIFAVGPYAYETQ 176 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bpback to top |