g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000951
Unique Nameg.arboreum_cottongen_reftransV1_0000951
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length348
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: K4BF02_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g025290.2 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.861e-29
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQK+RWGSCWS YWCFGSH+ SKRIGHAVLVPE + PG AV   +N ++   I++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LS+NAYSP G ASIFAIGPYAHETQ
Sbjct:   26 QPSTVQKRRWGSCWSLYWCFGSHKHSKRIGHAVLVPEPVAPGPAVPVTENPNHSATIVIPFIAPPSSPASFLPSDPPSATQSPAGLLSLKALSINAYSPGGTASIFAIGPYAHETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067JHK1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26079 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.755e-29
Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+ VQK+RWG CWS YWCFGSH++SKRIGHAVLVPE  VP   V +A+N ++ T   +PFIAPPSSPASFL SDPPS TQSPAGLLSL +LSV+AYSP GPASIFAIGPYAHETQ
Sbjct:   26 QPTVVQKRRWGGCWSLYWCFGSHKNSKRIGHAVLVPEPEVPQAVVTSAENQTHSTAAAVPFIAPPSSPASFLQSDPPSVTQSPAGLLSLTALSVSAYSPGGPASIFAIGPYAHETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: M1AMV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010118 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.770e-29
Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QPSTVQK+RWGSCWS YWCFGSH+ SKRIGHAVLVPE   PG AV   +N ++   I++PFIAPPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSP G ASIFAIGPYAHETQ
Sbjct:   26 QPSTVQKRRWGSCWSLYWCFGSHKHSKRIGHAVLVPEPAAPGPAVPVTENPNHSATIVIPFIAPPSSPASFLPSDPPSATQSPAGLLSLKSLSINAYSPGGTASIFAIGPYAHETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9RIV6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583050 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.264e-28
Identity = 91/116 (78.45%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TVQK+RWG CWS YWCFGSH+ +KRIGHAVL PE  V G  V +A+N S  T I +PFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSP GPASIFAIGPYAHETQ
Sbjct:   40 QPTTVQKRRWGGCWSLYWCFGSHK-TKRIGHAVLAPEPEVQGAVVTSAENQSQSTAITVPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPGGPASIFAIGPYAHETQ 154          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: W9S7Z6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004326 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.824e-28
Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+ V K+RWGSCWS YWCFGSH++SKRIGHAVLVPE ++PG A  A +N +  T I+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSP GP SIFAIGPYA+ETQ
Sbjct:   26 QPAAVPKRRWGSCWSLYWCFGSHKNSKRIGHAVLVPEPVLPGAAAPAPENQAPSTAIVLPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSINAYSPGGPTSIFAIGPYAYETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A068U9I6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00020119001 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.651e-27
Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP TVQK+RWGSCWSFYWCFGS ++SKRIG+AVLVPE  VPG AV    N ++   I++PFIAPPSSPASFL SDPPSATQSPA  L LAS SVN YSP G ASIFAIGPYAHETQ
Sbjct:   26 QPPTVQKRRWGSCWSFYWCFGSVKNSKRIGNAVLVPEPTVPGSAVPVPDNLNHSATIVIPFIAPPSSPASFLQSDPPSATQSPAKFLPLASFSVNTYSPSGAASIFAIGPYAHETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: M5XMF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004616mg PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.422e-27
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            QP+TV K+RWGSCWS YWCFG H+ +KRIGHAVLVPE +VPG AV A  N +  T I++PFIAPPSSPASFL SDPPSATQSPAG LSL SLS NAYSP GPASIF+IGPYA+ETQ
Sbjct:   26 QPTTVPKRRWGSCWSLYWCFGPHK-NKRIGHAVLVPEPVVPGAAVSAIDNQTTSTAIVVPFIAPPSSPASFLPSDPPSATQSPAGFLSLKSLSANAYSPGGPASIFSIGPYAYETQ 140          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: V4S4F7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004813mg PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.057e-26
Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            +P+ +QK+RWGSCWS YWCFGSH++SKRI HAVLVPE +V G A  AA+  ++ T I+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSP GPAS+FAIGPYAHETQ
Sbjct:   26 RPAAIQKRRWGSCWSLYWCFGSHKTSKRISHAVLVPEPMVTGAAAPAAETQAHSTAIVLPFIAPPSSPASFLQSDPPSATQSPAGLLSLNSLSVNAYSPGGPASMFAIGPYAHETQ 141          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9I470_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0012s12920g PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.133e-26
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    7 STVQKKRWGSCWSFYWCF---GSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            S+VQK+RWG CWS YWCF   GSH++SKRIGHAVLVPE  VPG    + +N +  T ILLPFIAPPSSPASFL SDPPS+TQSPAGLLSL SLS NAYSPRGPASIFAIGPYAHETQ
Sbjct:   31 SSVQKRRWGGCWSLYWCFGSHGSHKNSKRIGHAVLVPEPEVPGAVSSSTENQTQSTPILLPFIAPPSSPASFLQSDPPSSTQSPAGLLSLTSLSANAYSPRGPASIFAIGPYAHETQ 147          
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067EA64_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010808mg PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.960e-26
Identity = 86/116 (74.14%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348
            +P+ +QK+RWGSCWS YWCFGSH++SKRI HAVL+PE +V G A  AA+  ++ T I+LPFIAPPSSPASFL SDP SATQSPAGLL L SLSVNAYSP GPAS+FAIGPYAHETQ
Sbjct:   26 RPAAIQKRRWGSCWSLYWCFGSHKTSKRISHAVLLPEPMVTGAAAPAAETQAHSTAIVLPFIAPPSSPASFLQSDPSSATQSPAGLLCLNSLSVNAYSPGGPASMFAIGPYAHETQ 141          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K4BF02_SOLLC2.861e-2977.59Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A067JHK1_JATCU3.755e-2975.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M1AMV9_SOLTU7.770e-2978.45Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
B9RIV6_RICCO1.264e-2878.45Putative uncharacterized protein OS=Ricinus commun... [more]
W9S7Z6_9ROSA3.824e-2876.72Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A068U9I6_COFCA5.651e-2775.00Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M5XMF7_PRUPE6.422e-2775.86Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4S4F7_9ROSI1.057e-2676.72Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9I470_POPTR1.133e-2676.92Hydroxyproline-rich glycoprotein OS=Populus tricho... [more]
A0A067EA64_CITSI2.960e-2674.14Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31798FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR31798:SF4SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bp
CAGCCTTCAACCGTTCAGAAGAAAAGATGGGGAAGCTGCTGGAGTTTTTA
CTGGTGTTTTGGATCTCACAGAAGCAGTAAGCGAATAGGTCATGCTGTTC
TTGTCCCCGAAGCATTGGTACCTGGAGTTGCAGTTGTAGCTGCACAAAAT
GCAAGTAATCCAACTGGCATTCTATTGCCCTTTATTGCCCCTCCCTCATC
TCCTGCATCATTTCTCCTATCAGATCCTCCTTCTGCCACCCAGTCGCCTG
CTGGATTGCTATCCCTAGCATCGCTTTCAGTTAATGCCTACTCCCCCCGT
GGACCTGCATCTATTTTTGCCATTGGCCCTTATGCACATGAAACCCAG
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