g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: K4BF02_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g025290.2 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.861e-29 Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQK+RWGSCWS YWCFGSH+ SKRIGHAVLVPE + PG AV +N ++ I++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LS+NAYSP G ASIFAIGPYAHETQ Sbjct: 26 QPSTVQKRRWGSCWSLYWCFGSHKHSKRIGHAVLVPEPVAPGPAVPVTENPNHSATIVIPFIAPPSSPASFLPSDPPSATQSPAGLLSLKALSINAYSPGGTASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067JHK1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26079 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.755e-29 Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+ VQK+RWG CWS YWCFGSH++SKRIGHAVLVPE VP V +A+N ++ T +PFIAPPSSPASFL SDPPS TQSPAGLLSL +LSV+AYSP GPASIFAIGPYAHETQ Sbjct: 26 QPTVVQKRRWGGCWSLYWCFGSHKNSKRIGHAVLVPEPEVPQAVVTSAENQTHSTAAAVPFIAPPSSPASFLQSDPPSVTQSPAGLLSLTALSVSAYSPGGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: M1AMV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010118 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.770e-29 Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQK+RWGSCWS YWCFGSH+ SKRIGHAVLVPE PG AV +N ++ I++PFIAPPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSP G ASIFAIGPYAHETQ Sbjct: 26 QPSTVQKRRWGSCWSLYWCFGSHKHSKRIGHAVLVPEPAAPGPAVPVTENPNHSATIVIPFIAPPSSPASFLPSDPPSATQSPAGLLSLKSLSINAYSPGGTASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9RIV6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583050 PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.264e-28 Identity = 91/116 (78.45%), Postives = 98/116 (84.48%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQK+RWG CWS YWCFGSH+ +KRIGHAVL PE V G V +A+N S T I +PFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSP GPASIFAIGPYAHETQ Sbjct: 40 QPTTVQKRRWGGCWSLYWCFGSHK-TKRIGHAVLAPEPEVQGAVVTSAENQSQSTAITVPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPGGPASIFAIGPYAHETQ 154
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: W9S7Z6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004326 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.824e-28 Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+ V K+RWGSCWS YWCFGSH++SKRIGHAVLVPE ++PG A A +N + T I+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLS+NAYSP GP SIFAIGPYA+ETQ Sbjct: 26 QPAAVPKRRWGSCWSLYWCFGSHKNSKRIGHAVLVPEPVLPGAAAPAPENQAPSTAIVLPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSINAYSPGGPTSIFAIGPYAYETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A068U9I6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00020119001 PE=4 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 5.651e-27 Identity = 87/116 (75.00%), Postives = 95/116 (81.90%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP TVQK+RWGSCWSFYWCFGS ++SKRIG+AVLVPE VPG AV N ++ I++PFIAPPSSPASFL SDPPSATQSPA L LAS SVN YSP G ASIFAIGPYAHETQ Sbjct: 26 QPPTVQKRRWGSCWSFYWCFGSVKNSKRIGNAVLVPEPTVPGSAVPVPDNLNHSATIVIPFIAPPSSPASFLQSDPPSATQSPAKFLPLASFSVNTYSPSGAASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: M5XMF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004616mg PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 6.422e-27 Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TV K+RWGSCWS YWCFG H+ +KRIGHAVLVPE +VPG AV A N + T I++PFIAPPSSPASFL SDPPSATQSPAG LSL SLS NAYSP GPASIF+IGPYA+ETQ Sbjct: 26 QPTTVPKRRWGSCWSLYWCFGPHK-NKRIGHAVLVPEPVVPGAAVSAIDNQTTSTAIVVPFIAPPSSPASFLPSDPPSATQSPAGFLSLKSLSANAYSPGGPASIFSIGPYAYETQ 140
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: V4S4F7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004813mg PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.057e-26 Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 +P+ +QK+RWGSCWS YWCFGSH++SKRI HAVLVPE +V G A AA+ ++ T I+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSP GPAS+FAIGPYAHETQ Sbjct: 26 RPAAIQKRRWGSCWSLYWCFGSHKTSKRISHAVLVPEPMVTGAAAPAAETQAHSTAIVLPFIAPPSSPASFLQSDPPSATQSPAGLLSLNSLSVNAYSPGGPASMFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: B9I470_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0012s12920g PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.133e-26 Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = 1 Query: 7 STVQKKRWGSCWSFYWCF---GSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 S+VQK+RWG CWS YWCF GSH++SKRIGHAVLVPE VPG + +N + T ILLPFIAPPSSPASFL SDPPS+TQSPAGLLSL SLS NAYSPRGPASIFAIGPYAHETQ Sbjct: 31 SSVQKRRWGGCWSLYWCFGSHGSHKNSKRIGHAVLVPEPEVPGAVSSSTENQTQSTPILLPFIAPPSSPASFLQSDPPSSTQSPAGLLSLTSLSANAYSPRGPASIFAIGPYAHETQ 147
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A067EA64_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010808mg PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.960e-26 Identity = 86/116 (74.14%), Postives = 99/116 (85.34%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 +P+ +QK+RWGSCWS YWCFGSH++SKRI HAVL+PE +V G A AA+ ++ T I+LPFIAPPSSPASFL SDP SATQSPAGLL L SLSVNAYSP GPAS+FAIGPYAHETQ Sbjct: 26 RPAAIQKRRWGSCWSLYWCFGSHKTSKRISHAVLLPEPMVTGAAAPAAETQAHSTAIVLPFIAPPSSPASFLQSDPSSATQSPAGLLCLNSLSVNAYSPGGPASMFAIGPYAHETQ 141 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bpback to top |