g.arboreum_cottongen_reftransV1_0000951, g.arboreum_cottongen_reftransV1_0000951 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0B0MGV2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11887 PE=4 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.090e-41 Identity = 116/127 (91.34%), Postives = 116/127 (91.34%), Query Frame = 1 Query: 1 QPSTVQ-----------KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQ KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLLSDPPSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPSTVQAIQFAELVSVKKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLLSDPPSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 152
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2TDX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G275500 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.066e-39 Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQKKRWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG V A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPTTVQKKRWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGALVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0B0NFQ9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13171 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.164e-39 Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQKKRWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG +V A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIF+IGPYAHETQ Sbjct: 26 QPTTVQKKRWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGASVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFSIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2Q307_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G275500 PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 5.353e-37 Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQK RWGSCWSFYWCFGSH+SSKRIGHAVLVPE +VPG V A+NASNPTGI++PFIAPPSSPASFL SDPPSATQSPAGLLSL +LSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPTTVQK-RWGSCWSFYWCFGSHKSSKRIGHAVLVPEPVVPGALVSTAENASNPTGIVMPFIAPPSSPASFLQSDPPSATQSPAGLLSLTALSVNAYSPRGPASIFAIGPYAHETQ 140
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2QDD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.237e-36 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A061G128_THECC (Hydroxyproline-rich glycoprotein family protein isoform 1 OS=Theobroma cacao GN=TCM_015219 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.379e-36 Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQKKRWGSCW YWCFGS ++SKRIGHAVLVPE +VPG +V A+N SNPTGI+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPTTVQKKRWGSCWGLYWCFGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2T150_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.517e-36 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A0D2S6H4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G198500 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.487e-36 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEA+VPGVAVVAAQNASNPTGILLPFIAPPSSPASFL SDP SATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEAVVPGVAVVAAQNASNPTGILLPFIAPPSSPASFLQSDPSSATQSPAGLLSLASLSVNAYSPRGPASIFAIGPYAHETQ 141
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: A0A061G255_THECC (Hydroxyproline-rich glycoprotein family protein isoform 2 OS=Theobroma cacao GN=TCM_015219 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 2.803e-34 Identity = 99/120 (82.50%), Postives = 106/120 (88.33%), Query Frame = 1 Query: 1 QPSTVQ----KKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQ KKRWGSCW YWCFGS ++SKRIGHAVLVPE +VPG +V A+N SNPTGI+LPFIAPPSSPASFL SDPPSATQSPAGLLSL SLSVNAYSPRGPASIFAIGPYAHETQ Sbjct: 26 QPTTVQVHVYKKRWGSCWGLYWCFGSQKNSKRIGHAVLVPEPVVPGASVSTAENVSNPTGIILPFIAPPSSPASFLQSDPPSATQSPAGLLSLTSLSVNAYSPRGPASIFAIGPYAHETQ 145
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Match: F6H6K3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g00790 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.804e-30 Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 1 Query: 1 QPSTVQKKRWGSCWSFYWCFGSHRSSKRIGHAVLVPEALVPGVAVVAAQNASNPTGXXXXXXXXXXXXXXXXXXXXXXATQXXXXXXXXXXXXVNAYSPRGPASIFAIGPYAHETQ 348 QP+TVQK+RWGSC S YWCFGSHR SKRIGHAVLVPE +VPG A++N + T I+LPFIAPPSSPASFL SDPPS+TQSPAG LSL +LSVNAYSP GPAS+FAIGPYAHETQ Sbjct: 26 QPTTVQKRRWGSCLSLYWCFGSHRHSKRIGHAVLVPEPMVPGAVAPASENLNLSTSIVLPFIAPPSSPASFLQSDPPSSTQSPAGFLSLTALSVNAYSPSGPASMFAIGPYAHETQ 141 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000951 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000951 ID=g.arboreum_cottongen_reftransV1_0000951; Name=g.arboreum_cottongen_reftransV1_0000951; organism=Gossypium arboreum; type=contig; length=348bpback to top |