g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015138
Unique Nameg.arboreum_cottongen_reftransV1_0015138
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0015138:1..303 .
Chr10:88738030..88738332 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B2RJI4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005427 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.734e-22
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            HQL+F+LVNE LLEI   SP YFP PFSFN R   + KGN +  +VW  V+  L  + E DQ+L+D+I RDL K   WM LQ   E++ALELE+++ 
Sbjct:  681 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 777          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067DMS0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047781mg PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.839e-21
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            G NC+H L FDL+NE L+EI E S  Y+P P S    I  +  GN V ++VW  +S+ L+ + E DQSLD I + DL K   WM+LQ +SE +ALE+EDL+F
Sbjct:  618 GGNCNHVLFFDLINETLMEIYERSYSYYPKPLSSQCCIPQMPAGNRVLKEVWRNISRYLSLRPELDQSLDYITSSDLSKNNGWMSLQFNSECVALEVEDLIF 719          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V4STJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013810mg PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.970e-21
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            G NC+H L FDL+NE L+EI E S  Y+P P S    I  +  GN V ++VW  +S+ L+ + E DQSLD I + DL K   WM+LQ +SE +ALE+EDL+F
Sbjct:  740 GGNCNHVLFFDLINETLMEIYERSYSYYPKPLSSQCCIPQMPAGNRVLKEVWRNISRYLSLRPELDQSLDYITSSDLSKNNGWMSLQFNSECVALEVEDLIF 841          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9GJN7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24630g PE=4 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.513e-21
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    7 NCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            NCDH L+FDL+NE LLEI      YFP  FSF  R+S + +G +V ++VW ++S    S++E +QS +DI+ARD +K   WM L+  +E +AL+LEDL+F
Sbjct:  753 NCDHLLMFDLINEELLEIYNSLLAYFPKLFSFTQRVSPLPRGKHVIEEVWKRISWYRKSRSEMEQSTEDIVARDWEKGDGWMKLRLDAEDVALDLEDLIF 852          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: D7SKG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04620 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.381e-21
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            G +CDHQL+FDLVN+ALLEI + S  Y P   S++ R+  +  G++V + VW  +   L+S  E + +L+D++A DL K   WMNLQ+ +E LALE+ED++F
Sbjct:  800 GPSCDHQLLFDLVNQALLEIYQRSFTYCPRALSYSCRVHPMPVGHHVVEAVWANIRWRLSSGQEKELTLNDVVAGDLAKDDGWMNLQSETECLALEMEDMIF 901          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303
            D +L+FDLVNEA++E    S  YFP  F +         G     +VW +V  +L+   AE  D+SLDDI+ RDL      WMNLQ  SE+L LELEDL+F
Sbjct:  450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2RJI4_GLYSO2.734e-2251.55Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A067DMS0_CITSI1.839e-2149.02Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
V4STJ6_9ROSI2.970e-2149.02Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9GJN7_POPTR7.513e-2148.00Uncharacterized protein OS=Populus trichocarpa GN=... [more]
D7SKG6_VITVI8.381e-2146.08Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRM32_ARATH1.636e-1645.54Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025486Domain of unknown function DUF4378PFAMPF14309DUF4378coord: 1..94
e-value: 2.2E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR21726PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATEDcoord: 1..94
NoneNo IPR availablePANTHERPTHR21726:SF39SUBFAMILY NOT NAMEDcoord: 1..94

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bp
GGAAGCAACTGTGATCACCAACTGGTTTTTGATCTAGTTAATGAGGCACT
ACTTGAGATCAATGAAATGTCACCTGAATATTTCCCCAACCCCTTCTCTT
TCAACTCTCGCATTAGTTTAGTGCTCAAGGGAAACAATGTTTTTCAACAA
GTGTGGACCAAAGTCAGCAAAAACTTGGCATCCCAAGCTGAACATGACCA
GTCATTGGATGATATTATTGCTCGAGATTTGGACAAACCCGCTTGGATGA
ACCTTCAAGCCCATTCAGAATTTTTGGCACTTGAGCTAGAAGATTTGGTT
TTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025486DUF4378