g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B2RJI4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005427 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.734e-22 Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 HQL+F+LVNE LLEI SP YFP PFSFN R + KGN + +VW V+ L + E DQ+L+D+I RDL K WM LQ E++ALELE+++ Sbjct: 681 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 777
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067DMS0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047781mg PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.839e-21 Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 G NC+H L FDL+NE L+EI E S Y+P P S I + GN V ++VW +S+ L+ + E DQSLD I + DL K WM+LQ +SE +ALE+EDL+F Sbjct: 618 GGNCNHVLFFDLINETLMEIYERSYSYYPKPLSSQCCIPQMPAGNRVLKEVWRNISRYLSLRPELDQSLDYITSSDLSKNNGWMSLQFNSECVALEVEDLIF 719
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V4STJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013810mg PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.970e-21 Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 G NC+H L FDL+NE L+EI E S Y+P P S I + GN V ++VW +S+ L+ + E DQSLD I + DL K WM+LQ +SE +ALE+EDL+F Sbjct: 740 GGNCNHVLFFDLINETLMEIYERSYSYYPKPLSSQCCIPQMPAGNRVLKEVWRNISRYLSLRPELDQSLDYITSSDLSKNNGWMSLQFNSECVALEVEDLIF 841
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9GJN7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24630g PE=4 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 7.513e-21 Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 7 NCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 NCDH L+FDL+NE LLEI YFP FSF R+S + +G +V ++VW ++S S++E +QS +DI+ARD +K WM L+ +E +AL+LEDL+F Sbjct: 753 NCDHLLMFDLINEELLEIYNSLLAYFPKLFSFTQRVSPLPRGKHVIEEVWKRISWYRKSRSEMEQSTEDIVARDWEKGDGWMKLRLDAEDVALDLEDLIF 852
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: D7SKG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04620 PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.381e-21 Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 G +CDHQL+FDLVN+ALLEI + S Y P S++ R+ + G++V + VW + L+S E + +L+D++A DL K WMNLQ+ +E LALE+ED++F Sbjct: 800 GPSCDHQLLFDLVNQALLEIYQRSFTYCPRALSYSCRVHPMPVGHHVVEAVWANIRWRLSSGQEKELTLNDVVAGDLAKDDGWMNLQSETECLALEMEDMIF 901
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303 D +L+FDLVNEA++E S YFP F + G +VW +V +L+ AE D+SLDDI+ RDL WMNLQ SE+L LELEDL+F Sbjct: 450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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