g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9HPH5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03600g PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.926e-24 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 7 NCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 NCDH L+FDL+NE LL+I E S YFP FSF R+ + +GNNV +VW ++S + S +E +QS++DI+ARD +K WMNLQ +E AL+LEDL+F Sbjct: 874 NCDHLLLFDLINEELLDIYESSLAYFPKLFSFTQRVRPLPRGNNVIDEVWKRISWHRRSTSEMEQSIEDIVARDCEKGDGWMNLQLDAEDAALDLEDLIF 973
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V7C0A0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G143800g PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.183e-23 Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 DHQL+F+LVNE LLEI SP YFP PFSFN R+ + KG + +VW+ V+ + + E DQ+LDD++ RDL K WM LQ E++ LELE+++ Sbjct: 651 DHQLIFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPKGRYLLNEVWSSVNSYMTLRPELDQTLDDVVGRDLAKGRGWMILQEEEEYVGLELEEMIM 748
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B2RE79_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_010551 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 8.376e-23 Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 +HQL+F+LVNE LLEI SP YFP PFSFN R+ + KGN + +VW V+ L + E DQ+LDD++ RDL K WM LQ E++ALELE+++ Sbjct: 625 INHQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHSMPKGNYLLNEVWNSVNSYLNLKPELDQTLDDVVGRDLAKGKGWMILQEEEEYVALELEEMIM 723
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M3E3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.426e-23 Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 +HQL+F+LVNE LLEI SP YFP PFSFN R+ + KGN + +VW V+ L + E DQ+LDD++ RDL K WM LQ E++ALELE+++ Sbjct: 666 NHQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHSMPKGNYLLNEVWNSVNSYLNLKPELDQTLDDVVGRDLAKGKGWMILQEEEEYVALELEEMIM 763
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067LAM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05700 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 9.467e-23 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 G NCDHQL+FDL+NE LL I+ S YFP PFSF + KG ++ ++VW ++S S+ + DQSLDDI+ RDL K +W NLQ E +AL+LEDL+F Sbjct: 746 GFNCDHQLLFDLINEVLLHIHGSSLAYFPKPFSFTQLVHPSPKGIHILEEVWKRISWYRNSRTKADQSLDDIVIRDLSKDDSWRNLQIDVEDIALDLEDLIF 847
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: W9SIP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025227 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.215e-22 Identity = 49/99 (49.49%), Postives = 70/99 (70.71%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 C+HQL+FDLVNE L+E+NE S YFP FS + + KG+++ +++WT++S L + E DQSLDD++ARDL K WM+L+ E +ALELED +F Sbjct: 655 CNHQLLFDLVNETLVEMNEKSYTYFPKAFSLGRLVRPMPKGDHLLKEIWTRISSYLRLRPELDQSLDDVVARDLAKNDGWMDLEWEMEMVALELEDDIF 753
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B0PTP6_GOSAR (Leucine-rich repeat-containing 8A OS=Gossypium arboreum GN=F383_14190 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.035e-22 Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINE-MSPEYFPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303 DHQLVFDLVNEAL+ ++E S FP PF N I L+ KGN V Q+VW VS N+ Q EHD SLDDI+ D++K AWM LQ +F+ALEL++LVF Sbjct: 414 DHQLVFDLVNEALVVMSEKASVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMWFQQEHDGSLDDIVGLDMEKDAWMFLQGEDDFVALELQELVF 510
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9T0W8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1238310 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.089e-22 Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 G NCDHQL+FDL+NE L +I S YFP PFSF RI + KGN++ ++V ++S +S + DQSL+DI+A DL K +W+NLQ E +AL+LEDL+F Sbjct: 702 GCNCDHQLLFDLINEVLPQIYGSSLAYFPRPFSFTQRIRPLPKGNHIPEEVCKRISSYRSSGLKVDQSLNDIVAGDLAKDDSWLNLQLDVEDIALDLEDLIF 803
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M9F0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.411e-22 Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 HQL+F+LVNE LLEI SP YFP PFSFN R + KGN + +VW V+ L + E DQ+L+D+I RDL K WM LQ E++ALELE+++ Sbjct: 659 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 755
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M9E9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.656e-22 Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 HQL+F+LVNE LLEI SP YFP PFSFN R + KGN + +VW V+ L + E DQ+L+D+I RDL K WM LQ E++ALELE+++ Sbjct: 681 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 777
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303 D +L+FDLVNEA++E S YFP F + G +VW +V +L+ AE D+SLDDI+ RDL WMNLQ SE+L LELEDL+F Sbjct: 450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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