g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015138
Unique Nameg.arboreum_cottongen_reftransV1_0015138
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0015138:1..303 .
Chr10:88738030..88738332 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9HPH5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03600g PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.926e-24
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    7 NCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            NCDH L+FDL+NE LL+I E S  YFP  FSF  R+  + +GNNV  +VW ++S +  S +E +QS++DI+ARD +K   WMNLQ  +E  AL+LEDL+F
Sbjct:  874 NCDHLLLFDLINEELLDIYESSLAYFPKLFSFTQRVRPLPRGNNVIDEVWKRISWHRRSTSEMEQSIEDIVARDCEKGDGWMNLQLDAEDAALDLEDLIF 973          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V7C0A0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G143800g PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.183e-23
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303
            DHQL+F+LVNE LLEI   SP YFP PFSFN R+  + KG  +  +VW+ V+  +  + E DQ+LDD++ RDL K   WM LQ   E++ LELE+++ 
Sbjct:  651 DHQLIFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHPMPKGRYLLNEVWSSVNSYMTLRPELDQTLDDVVGRDLAKGRGWMILQEEEEYVGLELEEMIM 748          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B2RE79_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_010551 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 8.376e-23
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
             +HQL+F+LVNE LLEI   SP YFP PFSFN R+  + KGN +  +VW  V+  L  + E DQ+LDD++ RDL K   WM LQ   E++ALELE+++ 
Sbjct:  625 INHQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHSMPKGNYLLNEVWNSVNSYLNLKPELDQTLDDVVGRDLAKGKGWMILQEEEEYVALELEEMIM 723          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M3E3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-23
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            +HQL+F+LVNE LLEI   SP YFP PFSFN R+  + KGN +  +VW  V+  L  + E DQ+LDD++ RDL K   WM LQ   E++ALELE+++ 
Sbjct:  666 NHQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRLHSMPKGNYLLNEVWNSVNSYLNLKPELDQTLDDVVGRDLAKGKGWMILQEEEEYVALELEEMIM 763          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067LAM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05700 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.467e-23
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            G NCDHQL+FDL+NE LL I+  S  YFP PFSF   +    KG ++ ++VW ++S    S+ + DQSLDDI+ RDL K  +W NLQ   E +AL+LEDL+F
Sbjct:  746 GFNCDHQLLFDLINEVLLHIHGSSLAYFPKPFSFTQLVHPSPKGIHILEEVWKRISWYRNSRTKADQSLDDIVIRDLSKDDSWRNLQIDVEDIALDLEDLIF 847          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: W9SIP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025227 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.215e-22
Identity = 49/99 (49.49%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            C+HQL+FDLVNE L+E+NE S  YFP  FS    +  + KG+++ +++WT++S  L  + E DQSLDD++ARDL K   WM+L+   E +ALELED +F
Sbjct:  655 CNHQLLFDLVNETLVEMNEKSYTYFPKAFSLGRLVRPMPKGDHLLKEIWTRISSYLRLRPELDQSLDDVVARDLAKNDGWMDLEWEMEMVALELEDDIF 753          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0B0PTP6_GOSAR (Leucine-rich repeat-containing 8A OS=Gossypium arboreum GN=F383_14190 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.035e-22
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINE-MSPEYFPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303
            DHQLVFDLVNEAL+ ++E  S   FP PF  N  I L+ KGN V  Q+VW  VS N+  Q EHD SLDDI+  D++K AWM LQ   +F+ALEL++LVF
Sbjct:  414 DHQLVFDLVNEALVVMSEKASVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMWFQQEHDGSLDDIVGLDMEKDAWMFLQGEDDFVALELQELVF 510          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: B9T0W8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1238310 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.089e-22
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            G NCDHQL+FDL+NE L +I   S  YFP PFSF  RI  + KGN++ ++V  ++S   +S  + DQSL+DI+A DL K  +W+NLQ   E +AL+LEDL+F
Sbjct:  702 GCNCDHQLLFDLINEVLPQIYGSSLAYFPRPFSFTQRIRPLPKGNHIPEEVCKRISSYRSSGLKVDQSLNDIVAGDLAKDDSWLNLQLDVEDIALDLEDLIF 803          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M9F0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.411e-22
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            HQL+F+LVNE LLEI   SP YFP PFSFN R   + KGN +  +VW  V+  L  + E DQ+L+D+I RDL K   WM LQ   E++ALELE+++ 
Sbjct:  659 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 755          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: K7M9E9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.656e-22
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   16 HQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303
            HQL+F+LVNE LLEI   SP YFP PFSFN R   + KGN +  +VW  V+  L  + E DQ+L+D+I RDL K   WM LQ   E++ALELE+++ 
Sbjct:  681 HQLLFNLVNEVLLEIYGRSPTYFPRPFSFNPRFHPMPKGNYLLDEVWNSVNSYLTLRPELDQTLEDVIGRDLAKGKGWMILQEEEEYVALELEEMIM 777          
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303
            D +L+FDLVNEA++E    S  YFP  F +         G     +VW +V  +L+   AE  D+SLDDI+ RDL      WMNLQ  SE+L LELEDL+F
Sbjct:  450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9HPH5_POPTR2.926e-2452.00Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7C0A0_PHAVU7.183e-2348.98Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0B2RE79_GLYSO8.376e-2350.51Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
K7M3E3_SOYBN9.426e-2351.02Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A067LAM0_JATCU9.467e-2350.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
W9SIP0_9ROSA1.215e-2249.49Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A0B0PTP6_GOSAR2.035e-2256.57Leucine-rich repeat-containing 8A OS=Gossypium arb... [more]
B9T0W8_RICCO2.089e-2250.98Putative uncharacterized protein OS=Ricinus commun... [more]
K7M9F0_SOYBN2.411e-2251.55Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7M9E9_SOYBN2.656e-2251.55Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRM32_ARATH1.636e-1645.54Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025486Domain of unknown function DUF4378PFAMPF14309DUF4378coord: 1..94
e-value: 2.2E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR21726PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATEDcoord: 1..94
NoneNo IPR availablePANTHERPTHR21726:SF39SUBFAMILY NOT NAMEDcoord: 1..94

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bp
GGAAGCAACTGTGATCACCAACTGGTTTTTGATCTAGTTAATGAGGCACT
ACTTGAGATCAATGAAATGTCACCTGAATATTTCCCCAACCCCTTCTCTT
TCAACTCTCGCATTAGTTTAGTGCTCAAGGGAAACAATGTTTTTCAACAA
GTGTGGACCAAAGTCAGCAAAAACTTGGCATCCCAAGCTGAACATGACCA
GTCATTGGATGATATTATTGCTCGAGATTTGGACAAACCCGCTTGGATGA
ACCTTCAAGCCCATTCAGAATTTTTGGCACTTGAGCTAGAAGATTTGGTT
TTT
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR025486DUF4378