g.arboreum_cottongen_reftransV1_0015169, g.arboreum_cottongen_reftransV1_0015169 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B2NUI8_GLYSO (DUF246 domain-containing protein OS=Glycine soja GN=glysoja_049288 PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 1.360e-81 Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = -3 Query: 421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906 STT +YIVAG IYG NS+ ++ +P +FSHSTLATEEELE K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF+KTINP+R NFVKLIDQLD G ISWE F+ EVK+LH +RLGAPYLRQ GESPR+EENFYANP PGC+C +SQE+ TS Sbjct: 334 STTTIYIVAGPIYGGNSLEAFQSVFPKVFSHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFQKTINPDRLNFVKLIDQLDEGAISWEAFASEVKNLHSNRLGAPYLRQVGESPRMEENFYANPFPGCVCNKSQEQITS 495
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: M1BTB2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020335 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 6.511e-81 Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = -3 Query: 424 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906 STT +YIVAGEIYG+NSM R+ YPN++SHSTLAT EELE K+YQNRLAA+DY+VA ESDVF YTYDGNMAKA QGHRRFEGFRKTI+P+R NFV+LID LD G +SWEEF+ +VK+L +RLGAPYLRQ GESPRLEENFYANPLPGC+C RS E+ + Sbjct: 209 STTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTISPDRFNFVRLIDSLDKGEVSWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEAS 369
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: K4CRL2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g011860.2 PE=4 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 1.487e-80 Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = -3 Query: 415 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSL 906 STT +YIVAGEIYG+NSM R+ YPN++SHSTLAT EELE K+YQNRLAA+DY+VA ESDVF YTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LID LD G ISWEEF+ +VK+L +RLGAPYLRQ GESPRLEENFYANPLPGC+C RS E+ + L Sbjct: 469 STTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTINPDRFNFVRLIDSLDKGEISWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEASKQL 632
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A022RMX2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002739mg PE=4 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 2.152e-80 Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = -3 Query: 418 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSS 906 S+T +YIVAGEIYG+NSMA L A+YPN++SHSTLATEEELE K YQNRLAALDYI+A ESD FVYTYDGNMAKA QGHRRFEGFR+TINP+R FVKLID LD+G ISWEEF+ EVK LH +RLG PYLRQPG+ PRLEENFYANP PGC+C + Q S+ Sbjct: 474 SSTKIYIVAGEIYGNNSMAALGAEYPNVYSHSTLATEEELEPFKQYQNRLAALDYIIALESDAFVYTYDGNMAKAVQGHRRFEGFRRTINPDRLEFVKLIDSLDSGSISWEEFASEVKGLHSERLGGPYLRQPGQLPRLEENFYANPFPGCVCNKDQRPGGST 636
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: V4NZN1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10017869mg PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 7.970e-80 Identity = 125/160 (78.12%), Postives = 135/160 (84.38%), Query Frame = -3 Query: 427 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQ 906 S+T VYIVAGEIYG NSM R +YPN+FSHSTLATEEELE K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF+KTINP+R NFV+LID LD GV+SW EFS EVK LH DR+GAPY R PGE PRLEENFYANP P CIC +SQ +Q Sbjct: 412 SSTTVYIVAGEIYGGNSMDAFREEYPNVFSHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFKKTINPDRLNFVRLIDHLDDGVMSWGEFSSEVKRLHGDRIGAPYERLPGEFPRLEENFYANPQPDCICNKSQPEQ 571
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.478e-15 Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -3 Query: 424 STTPVYIVAGEIYGSNS-MATLRADYPNIFSHSTLATEEELELVKSYQNRL-AALDYIVAFESDVFVYTYDG--NMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906 ++T +Y+ AGE++G M R +P + +HS++ EEL + Q + +A+DY+V SD+F+ TYDG N A GHR + GFR TI P+R+ + + G + E ++ L + G P+ R SP E+FY N P C C+ + +K + Sbjct: 327 NSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELS--ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTN-FGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015169 ID=g.arboreum_cottongen_reftransV1_0015169; Name=g.arboreum_cottongen_reftransV1_0015169; organism=Gossypium arboreum; type=contig; length=908bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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