g.arboreum_cottongen_reftransV1_0015169, g.arboreum_cottongen_reftransV1_0015169 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015169
Unique Nameg.arboreum_cottongen_reftransV1_0015169
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length908
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015169:1..908 .
Chr11:21023303..21024288 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B2NUI8_GLYSO (DUF246 domain-containing protein OS=Glycine soja GN=glysoja_049288 PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.360e-81
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = -3
Query:  421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906
            STT +YIVAG IYG NS+   ++ +P +FSHSTLATEEELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF+KTINP+R NFVKLIDQLD G ISWE F+ EVK+LH +RLGAPYLRQ GESPR+EENFYANP PGC+C +SQE+ TS
Sbjct:  334 STTTIYIVAGPIYGGNSLEAFQSVFPKVFSHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFQKTINPDRLNFVKLIDQLDEGAISWEAFASEVKNLHSNRLGAPYLRQVGESPRMEENFYANPFPGCVCNKSQEQITS 495          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: M1BTB2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020335 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 6.511e-81
Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = -3
Query:  424 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906
            STT +YIVAGEIYG+NSM   R+ YPN++SHSTLAT EELE  K+YQNRLAA+DY+VA ESDVF YTYDGNMAKA QGHRRFEGFRKTI+P+R NFV+LID LD G +SWEEF+ +VK+L  +RLGAPYLRQ GESPRLEENFYANPLPGC+C RS E+ +
Sbjct:  209 STTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTISPDRFNFVRLIDSLDKGEVSWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEAS 369          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: K4CRL2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g011860.2 PE=4 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.487e-80
Identity = 123/164 (75.00%), Postives = 140/164 (85.37%), Query Frame = -3
Query:  415 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSL 906
            STT +YIVAGEIYG+NSM   R+ YPN++SHSTLAT EELE  K+YQNRLAA+DY+VA ESDVF YTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LID LD G ISWEEF+ +VK+L  +RLGAPYLRQ GESPRLEENFYANPLPGC+C RS E+ +  L
Sbjct:  469 STTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTINPDRFNFVRLIDSLDKGEISWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEASKQL 632          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A022RMX2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002739mg PE=4 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 2.152e-80
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = -3
Query:  418 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSS 906
            S+T +YIVAGEIYG+NSMA L A+YPN++SHSTLATEEELE  K YQNRLAALDYI+A ESD FVYTYDGNMAKA QGHRRFEGFR+TINP+R  FVKLID LD+G ISWEEF+ EVK LH +RLG PYLRQPG+ PRLEENFYANP PGC+C + Q    S+
Sbjct:  474 SSTKIYIVAGEIYGNNSMAALGAEYPNVYSHSTLATEEELEPFKQYQNRLAALDYIIALESDAFVYTYDGNMAKAVQGHRRFEGFRRTINPDRLEFVKLIDSLDSGSISWEEFASEVKGLHSERLGGPYLRQPGQLPRLEENFYANPFPGCVCNKDQRPGGST 636          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: V4NZN1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10017869mg PE=4 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 7.970e-80
Identity = 125/160 (78.12%), Postives = 135/160 (84.38%), Query Frame = -3
Query:  427 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQ 906
            S+T VYIVAGEIYG NSM   R +YPN+FSHSTLATEEELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF+KTINP+R NFV+LID LD GV+SW EFS EVK LH DR+GAPY R PGE PRLEENFYANP P CIC +SQ +Q
Sbjct:  412 SSTTVYIVAGEIYGGNSMDAFREEYPNVFSHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFKKTINPDRLNFVRLIDHLDDGVMSWGEFSSEVKRLHGDRIGAPYERLPGEFPRLEENFYANPQPDCICNKSQPEQ 571          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.478e-15
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  424 STTPVYIVAGEIYGSNS-MATLRADYPNIFSHSTLATEEELELVKSYQNRL-AALDYIVAFESDVFVYTYDG--NMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906
            ++T +Y+ AGE++G    M   R  +P + +HS++   EEL    + Q  + +A+DY+V   SD+F+ TYDG  N A    GHR + GFR TI P+R+    +    + G  +  E ++    L  +  G P+ R    SP   E+FY N  P C C+ + +K +
Sbjct:  327 NSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELS--ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTN-FGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2NUI8_GLYSO1.360e-8176.54DUF246 domain-containing protein OS=Glycine soja G... [more]
M1BTB2_SOLTU6.511e-8174.53Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4CRL2_SOLLC1.487e-8075.00Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022RMX2_ERYGU2.152e-8074.85Uncharacterized protein OS=Erythranthe guttata GN=... [more]
V4NZN1_EUTSA7.970e-8078.13Uncharacterized protein (Fragment) OS=Eutrema sals... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH3.478e-1532.73Uncharacterized protein At1g04910 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019378GDP-fucose protein O-fucosyltransferasePFAMPF10250O-FucTcoord: 1..65
e-value: 4.2E-12
score: 46.3
NoneNo IPR availablePANTHERPTHR31741:SF4O-FUCOSYLTRANSFERASE FAMILY PROTEINcoord: 1..158
NoneNo IPR availablePANTHERPTHR31741FAMILY NOT NAMEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015169 ID=g.arboreum_cottongen_reftransV1_0015169; Name=g.arboreum_cottongen_reftransV1_0015169; organism=Gossypium arboreum; type=contig; length=908bp
GGAAAATCGAGAACTAGTCTCCGTTATGTAAGAGACTAATTTGGCAAATG
TTATGTTTCTACAATCAATTATTGAAAGAATAACGAATAAATCAATATCA
TGATTCCAGTGTGACATATATGGTCGTGTGCCTGTAGAACTAGCCTGATT
TGCCCCAGAATTATACATCATCTTCTCTGCTTACCTAAGTTGCTGGTTTC
GGTCCTCTAACAAAAACTCAAATAGCTACTGTATAATTCAAGTGAGAAAT
CGGAAACCACAAGATTTCACAGCCTAGTAGGTGATTGCTGCAAGTCTCTT
TACCAGGGGAAACCACCAGAATCAAAGAATTTAAAATGCAGTGTATAATT
CAACTGACACGATTGACTACCTTAAATACCGTCTTTGAACTGAACTCAAG
GTCCGCTCAAGCTTCAGGCTGCTAGTTTGCTTTTCCTGGGATCTTTTGCA
GATGCATCCAGGAAGAGGATTTGCATAAAAATTCTCCTCCAGTCGTGGTG
ACTCCCCCGGCTGTCTTAGGTACGGCGCTCCAAGCCTGTCGAAATGTAAA
CTCTTTACTTCCAAAGAAAACTCTTCCCAAGATATTACACCCGCATCTAG
CTGATCGATGAGTTTGACAAAATTTTGTCTGTTGGGGTTGATTGTCTTTC
GAAATCCTTCAAACCTTCGGTGACCCTGCGTTGCTTTAGCCATATTCCCA
TCATATGTATAAACAAAGACATCGCTTTCAAATGCCACAATATAATCCAA
TGCAGCTAGGCGATTCTGGTATGACTTGACCAATTCCAACTCTTCCTCAG
TTGCCAAAGTAGAATGAGAAAAGATATTTGGATAATCGGCACGTAGTGTT
GCCATGCTGTTGCTGCCATAAATTTCTCCGGCAACAATATAGACAGGCGT
GGTGGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase