g.arboreum_cottongen_reftransV1_0015169, g.arboreum_cottongen_reftransV1_0015169 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015169
Unique Nameg.arboreum_cottongen_reftransV1_0015169
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length908
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015169:1..908 .
Chr11:21023303..21024288 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A067ESE2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006724mg PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 7.187e-89
Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = -3
Query:  391 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSS 906
            STT +YIVAGEIYGS+SMA  R ++PN+FSHSTLATEEELE  K YQNRLAALDY+VA ESDVFV+TYDGNMAKA QGHRRFEGFRK+INP++QN V+LIDQLD G ISWEEFS EVKSLH DRLG PYLRQPGESPRLEENFYANP PGCIC RSQE+  + LKL+  LSS
Sbjct:  457 STTTIYIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFRKSINPDKQNIVRLIDQLDEGAISWEEFSSEVKSLHSDRLGGPYLRQPGESPRLEENFYANPFPGCICDRSQER-VAGLKLDERLSS 627          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: F6HKX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g01650 PE=4 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.063e-87
Identity = 134/166 (80.72%), Postives = 147/166 (88.55%), Query Frame = -3
Query:  409 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKL 906
            STT +YIVAGEIYG NSMA  R++YPN+F+H+TLATEEELE  K YQNRLAALDYI+A ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+RQNFV+LIDQLD G ISWE FS EVKSLH +RLGAPYLRQ GESPRLEENF+ANP PGC+C +SQE Q SSLKL
Sbjct:  444 STTTIYIVAGEIYGRNSMAAFRSEYPNVFTHNTLATEEELEPFKPYQNRLAALDYILALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRQNFVRLIDQLDGGAISWEMFSQEVKSLHTNRLGAPYLRQAGESPRLEENFFANPFPGCVCNKSQE-QISSLKL 608          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A067JWW8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25069 PE=4 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 2.574e-85
Identity = 134/180 (74.44%), Postives = 152/180 (84.44%), Query Frame = -3
Query:  382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTL-----SSVQR 906
            S+T +YIVAG+IYGSNS+A  RA++PN+F HSTLAT EELE  K+YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+RQNFVKLID+ D G ISWEEFS  VKSLH +RLGAPYLRQ GESPRLEENFYANP PGC+C RSQE   ++LK E+ +     S++QR
Sbjct:  452 SSTTIYIVAGKIYGSNSLAAFRAEFPNVFCHSTLATAEELEPFKAYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRQNFVKLIDEFDEGAISWEEFSSTVKSLHSNRLGAPYLRQAGESPRLEENFYANPFPGCVCNRSQE-NLNTLKFEQWVKPSLGSALQR 630          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: M5WNE8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002471mg PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.590e-85
Identity = 134/178 (75.28%), Postives = 151/178 (84.83%), Query Frame = -3
Query:  379 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLE--RTLSSVQRR 906
            STT +YIVAGEIYG NSMA  R++YPN+FSHSTLATE+ELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF K+INP+RQNFVKL+DQLD G + WE FSLEVKSLH DRLGAPY+RQ GESPRLEENFYANP PGCIC +S+E Q +  KL+  R++S   +R
Sbjct:  493 STTTIYIVAGEIYGGNSMAAFRSEYPNVFSHSTLATEQELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFSKSINPDRQNFVKLVDQLDKGAVLWETFSLEVKSLHSDRLGAPYVRQVGESPRLEENFYANPFPGCICNKSEE-QIARQKLDERRSISVSSQR 669          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A059D766_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02760 PE=4 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.600e-85
Identity = 129/162 (79.63%), Postives = 144/162 (88.89%), Query Frame = -3
Query:  421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906
            STT +YIVAGEIYGSNSM   R++YPN+FSHSTLATEEELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+RQN+VKL+DQL+ G ISW++FSLEVK LH DR+GAPYLRQ GESPR+EENFYANPLPGC+C + QE+  S
Sbjct:  492 STTTIYIVAGEIYGSNSMDDFRSEYPNVFSHSTLATEEELEPFKLYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRQNYVKLVDQLERGDISWDDFSLEVKRLHSDRVGAPYLRQAGESPRIEENFYANPLPGCMCNKLQEQMRS 653          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: W9RPL5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023625 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.617e-84
Identity = 128/162 (79.01%), Postives = 142/162 (87.65%), Query Frame = -3
Query:  421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906
            STT +YIVAGEIYGSNSMA  RA+YPN+FSHSTLATEEEL   + YQNRLAALDY +A +SDVFVYTYDGNMAKA QGHRRF+GF+KTINP+RQNFVKLIDQLD   ISWEEFSLEVKS+H DRLGAPYLR+PG+SP+LEENFYANPLPGCIC     KQ +
Sbjct:  458 STTTIYIVAGEIYGSNSMAAFRAEYPNVFSHSTLATEEELAPFEPYQNRLAALDYFLALDSDVFVYTYDGNMAKAVQGHRRFDGFKKTINPDRQNFVKLIDQLDEHAISWEEFSLEVKSVHSDRLGAPYLREPGDSPKLEENFYANPLPGCICAMGLSKQIA 619          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: B9SPF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0085720 PE=4 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 3.830e-84
Identity = 127/170 (74.71%), Postives = 148/170 (87.06%), Query Frame = -3
Query:  397 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTL 906
            STT +YIVAGEIYGSNSMA  RA++PN+F+HSTLAT EELEL K YQNRLAALDYI A ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R++FV LIDQ D GV+SWEEFS +VKS H +RLG+PY RQ GESPR EENFYANP PGC+C +SQ+ Q++SLK+++ +
Sbjct:  440 STTTIYIVAGEIYGSNSMAAFRAEFPNVFTHSTLATAEELELFKQYQNRLAALDYIAALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRKSFVTLIDQFDEGVLSWEEFSSKVKSSHSNRLGSPYFRQVGESPRTEENFYANPFPGCVCSKSQQ-QSNSLKVDQMV 608          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: G7JS84_MEDTR (GDP-fucose O-fucosyltransferase-like protein OS=Medicago truncatula GN=MTR_4g019210 PE=4 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.533e-83
Identity = 127/162 (78.40%), Postives = 140/162 (86.42%), Query Frame = -3
Query:  421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906
            +TT +YIVAG IYG NSMA  RA+YPN+F+HSTLATEEELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LID LD G +SWE FSLEVK+LH +RLGAPYLRQ GESPR EENF+ANP PGC+C +SQE  TS
Sbjct:  469 ATTTIYIVAGPIYGGNSMAAFRAEYPNVFTHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRSNFVRLIDHLDEGSLSWENFSLEVKNLHSNRLGAPYLRQVGESPRTEENFFANPFPGCVCNKSQELITS 630          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: M1BTB3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020335 PE=4 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 4.867e-83
Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = -3
Query:  424 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906
            STT +YIVAGEIYG+NSM   R+ YPN++SHSTLAT EELE  K+YQNRLAA+DY+VA ESDVF YTYDGNMAKA QGHRRFEGFRKTI+P+R NFV+LID LD G +SWEEF+ +VK+L  +RLGAPYLRQ GESPRLEENFYANPLPGC+C RS E+ +
Sbjct:   63 STTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTISPDRFNFVRLIDSLDKGEVSWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEAS 223          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: K7KDI6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.335e-81
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = -3
Query:  421 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTS 906
            STT +YIVAG IYG NS+   ++ +P +FSHSTLATEEELE  K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGF+KTINP+R NFVKLIDQLD G ISWE F+ EVK+LH +RLGAPYLRQ GESPR+EENFYANP PGC+C +SQE+ TS
Sbjct:  316 STTTIYIVAGPIYGGNSLEAFQSVFPKVFSHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFQKTINPDRLNFVKLIDQLDEGAISWEAFASEVKNLHSNRLGAPYLRQVGESPRMEENFYANPFPGCVCNKSQEQITS 477          
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.478e-15
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -3
Query:  424 STTPVYIVAGEIYGSNS-MATLRADYPNIFSHSTLATEEELELVKSYQNRL-AALDYIVAFESDVFVYTYDG--NMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906
            ++T +Y+ AGE++G    M   R  +P + +HS++   EEL    + Q  + +A+DY+V   SD+F+ TYDG  N A    GHR + GFR TI P+R+    +    + G  +  E ++    L  +  G P+ R    SP   E+FY N  P C C+ + +K +
Sbjct:  327 NSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELS--ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTN-FGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067ESE2_CITSI7.187e-8979.07Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
F6HKX9_VITVI1.063e-8780.72Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067JWW8_JATCU2.574e-8574.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5WNE8_PRUPE2.590e-8575.28Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059D766_EUCGR5.600e-8579.63Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
W9RPL5_9ROSA2.617e-8479.01Uncharacterized protein OS=Morus notabilis GN=L484... [more]
B9SPF7_RICCO3.830e-8474.71Putative uncharacterized protein OS=Ricinus commun... [more]
G7JS84_MEDTR2.533e-8378.40GDP-fucose O-fucosyltransferase-like protein OS=Me... [more]
M1BTB3_SOLTU4.867e-8374.53Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K7KDI6_SOYBN1.335e-8176.54Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH3.478e-1532.73Uncharacterized protein At1g04910 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019378GDP-fucose protein O-fucosyltransferasePFAMPF10250O-FucTcoord: 1..65
e-value: 4.2E-12
score: 46.3
NoneNo IPR availablePANTHERPTHR31741:SF4O-FUCOSYLTRANSFERASE FAMILY PROTEINcoord: 1..158
NoneNo IPR availablePANTHERPTHR31741FAMILY NOT NAMEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015169 ID=g.arboreum_cottongen_reftransV1_0015169; Name=g.arboreum_cottongen_reftransV1_0015169; organism=Gossypium arboreum; type=contig; length=908bp
GGAAAATCGAGAACTAGTCTCCGTTATGTAAGAGACTAATTTGGCAAATG
TTATGTTTCTACAATCAATTATTGAAAGAATAACGAATAAATCAATATCA
TGATTCCAGTGTGACATATATGGTCGTGTGCCTGTAGAACTAGCCTGATT
TGCCCCAGAATTATACATCATCTTCTCTGCTTACCTAAGTTGCTGGTTTC
GGTCCTCTAACAAAAACTCAAATAGCTACTGTATAATTCAAGTGAGAAAT
CGGAAACCACAAGATTTCACAGCCTAGTAGGTGATTGCTGCAAGTCTCTT
TACCAGGGGAAACCACCAGAATCAAAGAATTTAAAATGCAGTGTATAATT
CAACTGACACGATTGACTACCTTAAATACCGTCTTTGAACTGAACTCAAG
GTCCGCTCAAGCTTCAGGCTGCTAGTTTGCTTTTCCTGGGATCTTTTGCA
GATGCATCCAGGAAGAGGATTTGCATAAAAATTCTCCTCCAGTCGTGGTG
ACTCCCCCGGCTGTCTTAGGTACGGCGCTCCAAGCCTGTCGAAATGTAAA
CTCTTTACTTCCAAAGAAAACTCTTCCCAAGATATTACACCCGCATCTAG
CTGATCGATGAGTTTGACAAAATTTTGTCTGTTGGGGTTGATTGTCTTTC
GAAATCCTTCAAACCTTCGGTGACCCTGCGTTGCTTTAGCCATATTCCCA
TCATATGTATAAACAAAGACATCGCTTTCAAATGCCACAATATAATCCAA
TGCAGCTAGGCGATTCTGGTATGACTTGACCAATTCCAACTCTTCCTCAG
TTGCCAAAGTAGAATGAGAAAAGATATTTGGATAATCGGCACGTAGTGTT
GCCATGCTGTTGCTGCCATAAATTTCTCCGGCAACAATATAGACAGGCGT
GGTGGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019378GDP-Fuc_O-FucTrfase