g.arboreum_cottongen_reftransV1_0015169, g.arboreum_cottongen_reftransV1_0015169 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B0PLX3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06750 PE=4 SV=1) HSP 1 Score: 374.785 bits (961), Expect = 6.124e-122 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = -3 Query: 370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR Sbjct: 441 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 619
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2SZY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 2.225e-118 Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 Query: 370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906 STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR Sbjct: 451 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 629
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2QC51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1) HSP 1 Score: 365.925 bits (938), Expect = 2.663e-118 Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 Query: 370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906 STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR Sbjct: 451 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 629
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2RY79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G180100 PE=4 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 3.231e-118 Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = -3 Query: 370 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 906 STTPVYIVAGEIYGSNSMATLRA+YPNIFSHSTLATEEELELVK YQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINP+RQNFVKLIDQLDAGVI WEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR Sbjct: 449 STTPVYIVAGEIYGSNSMATLRAEYPNIFSHSTLATEEELELVKPYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPDRQNFVKLIDQLDAGVIYWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQRRYLR 627
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0B0PAP0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05466 PE=4 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 1.150e-95 Identity = 143/175 (81.71%), Postives = 158/175 (90.29%), Query Frame = -3 Query: 382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906 S+TP+YIVAGEIYGSNSMA R+++PN++SHSTLATEEELEL K YQNRLAALDYIVA ESDVFVYT+DGNMAKA QGHRRFEGFRKTINP+RQNFVKLIDQLD GVI+WE FS EVKSLH DRLGAPY+RQ GESPRLEENFYANPLPGCICK SQ ++ S K ++TLSSVQR Sbjct: 459 SSTPIYIVAGEIYGSNSMAAFRSEFPNVYSHSTLATEEELELFKPYQNRLAALDYIVALESDVFVYTHDGNMAKAVQGHRRFEGFRKTINPDRQNFVKLIDQLDEGVITWEMFSSEVKSLHSDRLGAPYMRQTGESPRLEENFYANPLPGCICKTSQVQKISGPKFDQTLSSVQR 633
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2VY07_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G110800 PE=4 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 3.332e-94 Identity = 141/175 (80.57%), Postives = 157/175 (89.71%), Query Frame = -3 Query: 382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906 S+TP+YIVAGEIYGSNSMA R+++PN++SHSTLATEEELEL K YQNRLAALDYIVA ESDVFVYT+DGNMAKA QGHRRFEGFRKTINP+RQNFVKLIDQLD G I+WE FS EVKSLH DRLGAPY+RQ GESPRLEENFYANPLPGCICK SQ ++ S K ++TLSSV+R Sbjct: 459 SSTPIYIVAGEIYGSNSMAAFRSEFPNVYSHSTLATEEELELFKPYQNRLAALDYIVALESDVFVYTHDGNMAKAVQGHRRFEGFRKTINPDRQNFVKLIDQLDEGFITWEMFSSEVKSLHSDRLGAPYMRQTGESPRLEENFYANPLPGCICKTSQVQKISGPKFDQTLSSVRR 633
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A061ESF6_THECC (O-fucosyltransferase family protein isoform 2 OS=Theobroma cacao GN=TCM_021783 PE=4 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 7.499e-91 Identity = 144/175 (82.29%), Postives = 160/175 (91.43%), Query Frame = -3 Query: 382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906 S+TP+YIVAGEIYG NSMA RA+YPN+F+HSTLATEEELEL+K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LIDQLD GVISWE+FS EVKSLH DRLGAPYLR+PGESPRLEENFYANPLPGCIC RS+E+Q SLK ++ L+SV+R Sbjct: 344 SSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEELELLKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFVRLIDQLDGGVISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNRSREQQIISLKFDKNLNSVRR 518
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A0D2SX24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G377900 PE=4 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 7.689e-91 Identity = 137/175 (78.29%), Postives = 153/175 (87.43%), Query Frame = -3 Query: 382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906 S+TP+YIVAG+IYG +SMA R++YPN+FSHSTLATE+EL+L++ YQNRLAALDYIVA ESDVFVYTYDGNM K+ QGHRRFEGFRKTI P+RQN VKLIDQLD GVISWE+FS EVK LH DRLGAPYLRQPGESPRLEENFYANPLPGCIC R SL+LE+ LSSVQR Sbjct: 450 SSTPIYIVAGDIYGRDSMAAFRSEYPNVFSHSTLATEQELKLLEPYQNRLAALDYIVALESDVFVYTYDGNMGKSVQGHRRFEGFRKTIKPDRQNVVKLIDQLDEGVISWEQFSTEVKHLHLDRLGAPYLRQPGESPRLEENFYANPLPGCICSR-------SLELEQNLSSVQR 617
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: A0A061ER49_THECC (O-fucosyltransferase family protein isoform 1 OS=Theobroma cacao GN=TCM_021783 PE=4 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 2.500e-89 Identity = 144/175 (82.29%), Postives = 160/175 (91.43%), Query Frame = -3 Query: 382 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSSVQR 906 S+TP+YIVAGEIYG NSMA RA+YPN+F+HSTLATEEELEL+K YQNRLAALDYIVA ESDVFVYTYDGNMAKA QGHRRFEGFRKTINP+R NFV+LIDQLD GVISWE+FS EVKSLH DRLGAPYLR+PGESPRLEENFYANPLPGCIC RS+E+Q SLK ++ L+SV+R Sbjct: 470 SSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEELELLKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFVRLIDQLDGGVISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNRSREQQIISLKFDKNLNSVRR 644
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Match: V4SU21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011279mg PE=4 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 6.672e-89 Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = -3 Query: 391 STTPVYIVAGEIYGSNSMATLRADYPNIFSHSTLATEEELELVKSYQNRLAALDYIVAFESDVFVYTYDGNMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQTSSLKLERTLSS 906 STT +YIVAGEIYGS+SMA R ++PN+FSHSTLATEEELE K YQNRLAALDY+VA ESDVFV+TYDGNMAKA QGHRRFEGFRK+INP++QN V+LIDQLD G ISWEEFS EVKSLH DRLG PYLRQPGESPRLEENFYANP PGCIC RSQE+ + LKL+ LSS Sbjct: 457 STTTIYIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFRKSINPDKQNIVRLIDQLDEGAISWEEFSSEVKSLHSDRLGGPYLRQPGESPRLEENFYANPFPGCICDRSQER-VAGLKLDERLSS 627
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.478e-15 Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = -3 Query: 424 STTPVYIVAGEIYGSNS-MATLRADYPNIFSHSTLATEEELELVKSYQNRL-AALDYIVAFESDVFVYTYDG--NMAKATQGHRRFEGFRKTINPNRQNFVKLIDQLDAGVISWEEFSLEVKSLHFDRLGAPYLRQPGESPRLEENFYANPLPGCICKRSQEKQT 906 ++T +Y+ AGE++G M R +P + +HS++ EEL + Q + +A+DY+V SD+F+ TYDG N A GHR + GFR TI P+R+ + + G + E ++ L + G P+ R SP E+FY N P C C+ + +K + Sbjct: 327 NSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELS--ATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTN-FGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015169 ID=g.arboreum_cottongen_reftransV1_0015169; Name=g.arboreum_cottongen_reftransV1_0015169; organism=Gossypium arboreum; type=contig; length=908bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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