g.arboreum_cottongen_reftransV1_0011002, g.arboreum_cottongen_reftransV1_0011002 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: D7KVC5_ARALL (Trehalose-6-phosphate synthase OS=Arabidopsis lyrata subsp. lyrata GN=ATTPS1 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 6.409e-36 Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222 VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ MTTPIDYVLCIGHFLGKDEDVYTFFEPELP D +IAR++P Sbjct: 763 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKLMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIPAIARARP 836
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: B9SZ18_RICCO (Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_0493750 PE=4 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 6.724e-36 Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312 VVQGSRSVEVR VGVTKGAAIDRILGEIVH+ S+TTPIDYVLCIGHFLGKDEDVYTFFEPELP D + I R+K DG L R P KLPAS++G+K S K Sbjct: 749 VVQGSRSVEVRPVGVTKGAAIDRILGEIVHSKSVTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDGIGITRTKQTDG--LKSPGERRPSKLPASRTGSKPSQGK 850
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: M1AAB8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007089 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 8.749e-36 Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSK 219 VVQG RSVEVRAVGVTKGAAIDRILGEIVH+ ++ TPIDYVLCIGHFLGKDEDVYTFFEPELP D + + RSK Sbjct: 17 VVQGLRSVEVRAVGVTKGAAIDRILGEIVHSKAIATPIDYVLCIGHFLGKDEDVYTFFEPELPSDCIGMPRSK 89
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: M4F1V2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035049 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 9.198e-36 Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222 VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +I+RS+P Sbjct: 749 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAISRSRP 823
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A078GNW9_BRANA (BnaA02g18920D protein OS=Brassica napus GN=BnaA02g18920D PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.604e-35 Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222 VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IAR +P Sbjct: 597 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARPRP 671
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS1_ARATH (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.648e-39 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222 VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D +IARS+P Sbjct: 751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRP 824
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.012e-27 Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186 VV+G +SVEV AVGVTKG+A++RILGEIVH SM TPIDYVLCIG FLGKDEDVYTFFEPEL Sbjct: 669 VVRGGQSVEVHAVGVTKGSAMERILGEIVHNKSMATPIDYVLCIGCFLGKDEDVYTFFEPEL 730
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS2_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 OS=Arabidopsis thaliana GN=TPS2 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.622e-23 Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186 VV+G+ SVEV A+G TKGAAI RILGEIVH SMTTPID+V C G+FL KDED+YTFFE ++ Sbjct: 665 VVRGNHSVEVHAIGETKGAAIGRILGEIVHRKSMTTPIDFVFCSGYFLEKDEDIYTFFESKI 726
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 7.976e-21 Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 Query: 1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALS 204 VV+G SVEV A+GVTK I ILGEIVH +MTTPIDYV C G+FL KDED+YTFFE E+ LS Sbjct: 642 VVRGKYSVEVHAIGVTKEPEIGHILGEIVHKKAMTTPIDYVFCSGYFLEKDEDIYTFFESEILSPKLS 709 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011002 ID=g.arboreum_cottongen_reftransV1_0011002; Name=g.arboreum_cottongen_reftransV1_0011002; organism=Gossypium arboreum; type=contig; length=315bpback to top |