g.arboreum_cottongen_reftransV1_0011002, g.arboreum_cottongen_reftransV1_0011002 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011002
Unique Nameg.arboreum_cottongen_reftransV1_0011002
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0011002:1..315 .
Chr7:71207990..71208604 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: D7KVC5_ARALL (Trehalose-6-phosphate synthase OS=Arabidopsis lyrata subsp. lyrata GN=ATTPS1 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.409e-36
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+  MTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IAR++P
Sbjct:  763 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKLMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIPAIARARP 836          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: B9SZ18_RICCO (Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_0493750 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.724e-36
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVR VGVTKGAAIDRILGEIVH+ S+TTPIDYVLCIGHFLGKDEDVYTFFEPELP D + I R+K  DG  L     R P KLPAS++G+K S  K
Sbjct:  749 VVQGSRSVEVRPVGVTKGAAIDRILGEIVHSKSVTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDGIGITRTKQTDG--LKSPGERRPSKLPASRTGSKPSQGK 850          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: M1AAB8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007089 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.749e-36
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSK 219
            VVQG RSVEVRAVGVTKGAAIDRILGEIVH+ ++ TPIDYVLCIGHFLGKDEDVYTFFEPELP D + + RSK
Sbjct:   17 VVQGLRSVEVRAVGVTKGAAIDRILGEIVHSKAIATPIDYVLCIGHFLGKDEDVYTFFEPELPSDCIGMPRSK 89          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: M4F1V2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035049 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.198e-36
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +I+RS+P
Sbjct:  749 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAISRSRP 823          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A078GNW9_BRANA (BnaA02g18920D protein OS=Brassica napus GN=BnaA02g18920D PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.604e-35
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IAR +P
Sbjct:  597 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARPRP 671          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS1_ARATH (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.648e-39
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRP 824          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.012e-27
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G +SVEV AVGVTKG+A++RILGEIVH  SM TPIDYVLCIG FLGKDEDVYTFFEPEL
Sbjct:  669 VVRGGQSVEVHAVGVTKGSAMERILGEIVHNKSMATPIDYVLCIGCFLGKDEDVYTFFEPEL 730          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS2_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 OS=Arabidopsis thaliana GN=TPS2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.622e-23
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G+ SVEV A+G TKGAAI RILGEIVH  SMTTPID+V C G+FL KDED+YTFFE ++
Sbjct:  665 VVRGNHSVEVHAIGETKGAAIGRILGEIVHRKSMTTPIDFVFCSGYFLEKDEDIYTFFESKI 726          
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.976e-21
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALS 204
            VV+G  SVEV A+GVTK   I  ILGEIVH  +MTTPIDYV C G+FL KDED+YTFFE E+    LS
Sbjct:  642 VVRGKYSVEVHAIGVTKEPEIGHILGEIVHKKAMTTPIDYVFCSGYFLEKDEDIYTFFESEILSPKLS 709          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7KVC5_ARALL6.409e-3687.84Trehalose-6-phosphate synthase OS=Arabidopsis lyra... [more]
B9SZ18_RICCO6.724e-3674.04Trehalose-6-phosphate synthase, putative OS=Ricinu... [more]
M1AAB8_SOLTU8.749e-3683.56Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M4F1V2_BRARP9.198e-3688.00Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A078GNW9_BRANA1.604e-3588.00BnaA02g18920D protein OS=Brassica napus GN=BnaA02g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TPS1_ARATH2.648e-3990.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPS4_ARATH1.012e-2782.26Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS2_ARATH9.622e-2370.97Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS3_ARATH7.976e-2164.71Probable alpha,alpha-trehalose-phosphate synthase ... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011002 ID=g.arboreum_cottongen_reftransV1_0011002; Name=g.arboreum_cottongen_reftransV1_0011002; organism=Gossypium arboreum; type=contig; length=315bp
GTCGTTCAAGGAAGCCGATCGGTTGAGGTACGAGCAGTTGGCGTTACAAA
GGGGGCAGCCATTGATCGTATTTTGGGAGAGATTGTTCACACTACATCAA
TGACAACTCCGATCGACTATGTTCTTTGCATCGGACATTTTCTGGGGAAG
GATGAAGATGTTTACACCTTTTTCGAACCCGAGCTGCCTTTTGATGCATT
GAGCATAGCAAGAAGCAAGCCATTTGATGGACCACGGTTATTACCTGCTG
AAAGAAGGCCTCCATTGAAGCTCCCAGCAAGCAAAAGTGGAGCTAAATCG
TCATTACAAAAAAAG
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