g.arboreum_cottongen_reftransV1_0011002, g.arboreum_cottongen_reftransV1_0011002 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011002
Unique Nameg.arboreum_cottongen_reftransV1_0011002
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0011002:1..315 .
Chr7:71207990..71208604 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0D2Q0U8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046400 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.901e-37
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVR VGVTKGAAIDRILGEIVH TSMTTPIDYVLC+GHFLGKDEDVYTFFEPELP D +++A+ KP D    LP E++ P KLPA+KSG KSS  K
Sbjct:  593 VVQGSRSVEVRPVGVTKGAAIDRILGEIVHNTSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSD-VNMAKCKPIDA-PKLPTEKKAPSKLPATKSGPKSSQTK 694
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: R0GCP6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019735mg PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.603e-37
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IAR++P
Sbjct:  752 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIPAIARARP 825
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0D2M6S6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046400 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.087e-36
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSSLQK 312
            VVQGSRSVEVR VGVTKGAAIDRILGEIVH TSMTTPIDYVLC+GHFLGKDEDVYTFFEPELP D +++A+ KP D    LP E++ P KLPA+KSG KSS  K
Sbjct:  754 VVQGSRSVEVRPVGVTKGAAIDRILGEIVHNTSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSD-VNMAKCKPIDA-PKLPTEKKAPSKLPATKSGPKSSQTK 855
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: F6H2K5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00300 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.014e-36
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSS 303
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH  SMT+PIDYVLC GHFLGKDEDVYTFFEPELP D +S+A+S+  D    L  ER+  LKLPA+KSG+KSS
Sbjct:  747 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKSMTSPIDYVLCAGHFLGKDEDVYTFFEPELPSDNISMAKSRAIDA-FKLSGERKSSLKLPANKSGSKSS 846
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A5BZ94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006442 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.187e-36
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDGXXXXXXXXXXXXXXXASKSGAKSS 303
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH  SMT+PIDYVLC GHFLGKDEDVYTFFEPELP D +S+A+S+  D    L  ER+  LKLPA+KSG+KSS
Sbjct:  733 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHNKSMTSPIDYVLCAGHFLGKDEDVYTFFEPELPSDNISMAKSRAIDA-FKLSGERKSSLKLPANKSGSKSS 832
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A078DDY6_BRANA (BnaA07g34230D protein OS=Brassica napus GN=BnaA07g34230D PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.360e-36
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IARS+P
Sbjct:  749 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARSRP 823
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A078FNE0_BRANA (BnaC02g25020D protein OS=Brassica napus GN=BnaC02g25020D PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.220e-36
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARSRP 825
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A078DGQ3_BRANA (BnaC06g39000D protein OS=Brassica napus GN=BnaC06g39000D PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.436e-36
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IARS+P
Sbjct:  749 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARSRP 823
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0D3D1L8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.436e-36
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDAL-SIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D + +IARS+P
Sbjct:  749 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDIIPAIARSRP 823
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Match: A0A0A0L1Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622880 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.876e-36
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKPFDG 231
            VVQGSRSVEVRAVGVTKG+AIDRILGEIVH+ SMTTPIDYVLC+GHFLGKDEDVYTFFEPELP D + + R+K  DG
Sbjct:  753 VVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMPRAKGTDG 829
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS1_ARATH (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.648e-39
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALSIARSKP 222
            VVQGSRSVEVRAVGVTKGAAIDRILGEIVH+ SMTTPIDYVLCIGHFLGKDEDVYTFFEPELP D  +IARS+P
Sbjct:  751 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDMPAIARSRP 824
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS4_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.012e-27
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G +SVEV AVGVTKG+A++RILGEIVH  SM TPIDYVLCIG FLGKDEDVYTFFEPEL
Sbjct:  669 VVRGGQSVEVHAVGVTKGSAMERILGEIVHNKSMATPIDYVLCIGCFLGKDEDVYTFFEPEL 730
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS2_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2 OS=Arabidopsis thaliana GN=TPS2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.622e-23
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPEL 186
            VV+G+ SVEV A+G TKGAAI RILGEIVH  SMTTPID+V C G+FL KDED+YTFFE ++
Sbjct:  665 VVRGNHSVEVHAIGETKGAAIGRILGEIVHRKSMTTPIDFVFCSGYFLEKDEDIYTFFESKI 726
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Match: TPS3_ARATH (Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3 PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.976e-21
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 VVQGSRSVEVRAVGVTKGAAIDRILGEIVHTTSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPFDALS 204
            VV+G  SVEV A+GVTK   I  ILGEIVH  +MTTPIDYV C G+FL KDED+YTFFE E+    LS
Sbjct:  642 VVRGKYSVEVHAIGVTKEPEIGHILGEIVHKKAMTTPIDYVFCSGYFLEKDEDIYTFFESEILSPKLS 709
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2Q0U8_GOSRA4.901e-3776.92Uncharacterized protein OS=Gossypium raimondii GN=... [more]
R0GCP6_9BRAS6.603e-3789.19Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0D2M6S6_GOSRA1.087e-3676.92Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6H2K5_VITVI3.014e-3677.23Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BZ94_VITVI3.187e-3677.23Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A078DDY6_BRANA3.360e-3689.33BnaA07g34230D protein OS=Brassica napus GN=BnaA07g... [more]
A0A078FNE0_BRANA5.220e-3689.33BnaC02g25020D protein OS=Brassica napus GN=BnaC02g... [more]
A0A078DGQ3_BRANA5.436e-3689.33BnaC06g39000D protein OS=Brassica napus GN=BnaC06g... [more]
A0A0D3D1L8_BRAOL5.436e-3689.33Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A0A0L1Z3_CUCSA5.876e-3683.12Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011002 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TPS1_ARATH2.648e-3990.54Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
TPS4_ARATH1.012e-2782.26Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS2_ARATH9.622e-2370.97Probable alpha,alpha-trehalose-phosphate synthase ... [more]
TPS3_ARATH7.976e-2164.71Probable alpha,alpha-trehalose-phosphate synthase ... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011002 ID=g.arboreum_cottongen_reftransV1_0011002; Name=g.arboreum_cottongen_reftransV1_0011002; organism=Gossypium arboreum; type=contig; length=315bp
GTCGTTCAAGGAAGCCGATCGGTTGAGGTACGAGCAGTTGGCGTTACAAA
GGGGGCAGCCATTGATCGTATTTTGGGAGAGATTGTTCACACTACATCAA
TGACAACTCCGATCGACTATGTTCTTTGCATCGGACATTTTCTGGGGAAG
GATGAAGATGTTTACACCTTTTTCGAACCCGAGCTGCCTTTTGATGCATT
GAGCATAGCAAGAAGCAAGCCATTTGATGGACCACGGTTATTACCTGCTG
AAAGAAGGCCTCCATTGAAGCTCCCAGCAAGCAAAAGTGGAGCTAAATCG
TCATTACAAAAAAAG
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