g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: T2DNR4_PHAVU (Alpha-1,4-glucan-protein synthase [UDP-forming]-like protein OS=Phaseolus vulgaris PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.687e-71 Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK++CISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCP+TPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 75 PKANCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPATPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 185
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C6TD94_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 3.119e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCIS KDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 78 PKASCISVKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M0Z4U7_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.200e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 73 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 183
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M1CAG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024627 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.444e-71 Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 79 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 189
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: W5BNP0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 4.628e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 72 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 182
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2) HSP 1 Score: 225.713 bits (574), Expect = 3.757e-72 Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTP FFNTLYDPYR GADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 71 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVK 181
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP3_ORYSJ (UDP-arabinopyranose mutase 3 OS=Oryza sativa subsp. japonica GN=UAM3 PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 7.289e-72 Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 P++SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 79 PRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLNPSTPFFFNTLYDPYRDGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 189
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP1_ARATH (UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.429e-71 Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK +NALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVK Sbjct: 81 PKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVK 191
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.050e-71 Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTP FFNTLYDPYR GADFVRGYPFS+REG TAVSHGLWLNIPDYDAPTQLVK Sbjct: 75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVK 185
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 3.055e-71 Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+G +INALEQHIKNLL PSTPFFFNTLYDPYR G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 74 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 184
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ARATH (UDP-arabinopyranose mutase 2 OS=Arabidopsis thaliana GN=RGP2 PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 4.314e-71 Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK +NALEQHIKNLLCPS+PFFFNTLYDPYR GADFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVK Sbjct: 81 PKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPSSPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVK 191
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 5.406e-71 Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG TAVSHGLWLNIPDYDAPTQLVK Sbjct: 81 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVK 191
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp. japonica GN=UAM1 PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 1.906e-70 Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKY++TIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG TAVSHGLWLNIPDYDAPTQ+VK Sbjct: 81 PKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAKTAVSHGLWLNIPDYDAPTQMVK 191
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP3_ARATH (UDP-arabinopyranose mutase 3 OS=Arabidopsis thaliana GN=RGP3 PE=1 SV=2) HSP 1 Score: 217.624 bits (553), Expect = 3.723e-69 Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLL PSTP FFNTLYDPYR GADFVRGYPFS+REG TAVSHGLWLNIPDYDAPTQLVK Sbjct: 77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAITAVSHGLWLNIPDYDAPTQLVK 187
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP4_ARATH (Probable UDP-arabinopyranose mutase 4 OS=Arabidopsis thaliana GN=RGP4 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 9.250e-64 Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 P+++CIS+KD CRCFG+MVSKKKYIYTIDDDCFVAKDPSGKDIN + QHIKNL PSTP +FNTLYDP+R G DFVRGYPFSLREGV TA+SHGLWLNIPDYDAPTQLVK Sbjct: 77 PRANCISYKDGGCRCFGFMVSKKKYIYTIDDDCFVAKDPSGKDINVIAQHIKNLETPSTPHYFNTLYDPFRDGTDFVRGYPFSLREGVQTAISHGLWLNIPDYDAPTQLVK 187 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 12
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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