g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: T2DNR4_PHAVU (Alpha-1,4-glucan-protein synthase [UDP-forming]-like protein OS=Phaseolus vulgaris PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.687e-71 Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK++CISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCP+TPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 75 PKANCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPATPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 185
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C6TD94_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 3.119e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCIS KDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 78 PKASCISVKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M0Z4U7_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.200e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 73 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 183
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M1CAG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024627 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.444e-71 Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 79 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 189
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: W5BNP0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 4.628e-71 Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 72 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 182
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP5_ARATH (Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.482e-42 Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 S+ F +CR FGY+VSKKKYI +IDDDC AKDP G ++A+ QH+ NL P+TP FFNTLYDPY GADFVRGYPFSLR GVP A S GLWLN+ D DAPTQ +K Sbjct: 73 SNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALK 181
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp. japonica GN=UAM2 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.375e-42 Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 ++ I F +CR FGY+VS+KKY+ +IDD+C AKD G ++A+ QH+ NL P+TPFFFNTLYDP+R GADFVRGYPFSLREGV +S GLWL+ DYD T +VK Sbjct: 70 ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 12
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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