g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002393
Unique Nameg.arboreum_cottongen_reftransV1_0002393
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length333
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0002393:1..333 .
Chr1:70102141..70103141 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: T2DNR4_PHAVU (Alpha-1,4-glucan-protein synthase [UDP-forming]-like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.687e-71
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK++CISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCP+TPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKANCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPATPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 185          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C6TD94_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 3.119e-71
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCIS KDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   78 PKASCISVKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M0Z4U7_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.200e-71
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   73 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 183          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M1CAG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024627 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.444e-71
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   79 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 189          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: W5BNP0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.628e-71
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   72 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 182          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP5_ARATH (Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.482e-42
Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            S+   F   +CR FGY+VSKKKYI +IDDDC  AKDP G  ++A+ QH+ NL  P+TP FFNTLYDPY  GADFVRGYPFSLR GVP A S GLWLN+ D DAPTQ +K
Sbjct:   73 SNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALK 181          
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp. japonica GN=UAM2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.375e-42
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            ++ I F   +CR FGY+VS+KKY+ +IDD+C  AKD  G  ++A+ QH+ NL  P+TPFFFNTLYDP+R GADFVRGYPFSLREGV   +S GLWL+  DYD  T +VK
Sbjct:   70 ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
T2DNR4_PHAVU2.687e-7195.50Alpha-1,4-glucan-protein synthase [UDP-forming]-li... [more]
C6TD94_SOYBN3.119e-7196.40Putative uncharacterized protein (Fragment) OS=Gly... [more]
M0Z4U7_HORVD3.200e-7196.40Uncharacterized protein OS=Hordeum vulgare var. di... [more]
M1CAG8_SOLTU3.444e-7196.40Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
W5BNP0_WHEAT4.628e-7196.40Uncharacterized protein OS=Triticum aestivum PE=4 ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RGP5_ARATH1.482e-4265.14Probable UDP-arabinopyranose mutase 5 OS=Arabidops... [more]
RGP2_ORYSJ3.375e-4259.63Probable UDP-arabinopyranose mutase 2 OS=Oryza sat... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004901Reversibly glycosylated polypeptide familyPFAMPF03214RGPcoord: 1..93
e-value: 1.1E-53
score: 182.5
NoneNo IPR availablePANTHERPTHR31682:SF3UDP-ARABINOPYRANOSE MUTASE 1-RELATEDcoord: 1..93
NoneNo IPR availablePANTHERPTHR31682FAMILY NOT NAMEDcoord: 1..93

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bp
CCTAAGTCTTCTTGTATCTCTTTCAAGGATTCTGCTTGTCGCTGCTTTGG
TTACATGGTTTCCAAGAAGAAGTACATTTATACCATTGATGATGATTGCT
TTGTTGCGAAAGATCCGTCCGGCAAAGACATTAACGCACTGGAGCAGCAC
ATAAAGAACCTTCTTTGTCCATCTACTCCGTTTTTCTTCAACACTCTCTA
TGACCCGTACCGAGCTGGTGCAGATTTCGTTCGTGGGTACCCATTCAGTC
TCCGTGAAGGTGTTCCCACTGCCGTTTCTCATGGCCTCTGGCTCAACATC
CCGGATTATGATGCACCAACTCAGCTTGTCAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR004901RGP
Vocabulary: Biological Process
TermDefinition
GO:0030244cellulose biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016866intramolecular transferase activity