g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002393
Unique Name	g.arboreum_cottongen_reftransV1_0002393
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	333

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002393:1..333 . Chr1:70102141..70103141 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: B9RLK7_RICCO (Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1468610 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.891e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRTGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2SDP3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.218e-72
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: I1J637_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.085e-72
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   78 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B2P8D5_GLYSO (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Glycine soja GN=glysoja_036788 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.085e-72
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   78 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A061FYK1_THECC (Reversibly glycosylated polypeptide 3 OS=Theobroma cacao GN=TCM_014329 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 7.485e-72
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B0M9J5_GOSAR (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Gossypium arboreum GN=F383_16975 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.385e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2S6I6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-71
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: K4BKY8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g114860.2 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.369e-71
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   71 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 181

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: B6T9G3_MAIZE (Alpha-1,4-glucan-protein synthase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.583e-71
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRVGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 185

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C5XDW6_SORBI (Putative uncharacterized protein Sb02g038770 OS=Sorghum bicolor GN=Sb02g038770 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.822e-71
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRVGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 185

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 3.757e-72
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTP FFNTLYDPYR GADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   71 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVK 181

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP3_ORYSJ (UDP-arabinopyranose mutase 3 OS=Oryza sativa subsp. japonica GN=UAM3 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.289e-72
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            P++SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   79 PRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLNPSTPFFFNTLYDPYRDGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 189

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP1_ARATH (UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.429e-71
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK +NALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVK
Sbjct:   81 PKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVK 191

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.050e-71
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTP FFNTLYDPYR GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVK 185

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.055e-71
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+G +INALEQHIKNLL PSTPFFFNTLYDPYR G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   74 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 184

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ARATH (UDP-arabinopyranose mutase 2 OS=Arabidopsis thaliana GN=RGP2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.314e-71
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYI+TIDDDCFVAKDPSGK +NALEQHIKNLLCPS+PFFFNTLYDPYR GADFVRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVK
Sbjct:   81 PKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLCPSSPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVK 191

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 5.406e-71
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVK
Sbjct:   81 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVK 191

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp. japonica GN=UAM1 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.906e-70
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKY++TIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQ+VK
Sbjct:   81 PKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAKTAVSHGLWLNIPDYDAPTQMVK 191

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP3_ARATH (UDP-arabinopyranose mutase 3 OS=Arabidopsis thaliana GN=RGP3 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.723e-69
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLL PSTP FFNTLYDPYR GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVK
Sbjct:   77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAITAVSHGLWLNIPDYDAPTQLVK 187

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP4_ARATH (Probable UDP-arabinopyranose mutase 4 OS=Arabidopsis thaliana GN=RGP4 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.250e-64
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            P+++CIS+KD  CRCFG+MVSKKKYIYTIDDDCFVAKDPSGKDIN + QHIKNL  PSTP +FNTLYDP+R G DFVRGYPFSLREGV TA+SHGLWLNIPDYDAPTQLVK
Sbjct:   77 PRANCISYKDGGCRCFGFMVSKKKYIYTIDDDCFVAKDPSGKDINVIAQHIKNLETPSTPHYFNTLYDPFRDGTDFVRGYPFSLREGVQTAISHGLWLNIPDYDAPTQLVK 187

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9RLK7_RICCO	1.891e-72	98.20	Alpha-1,4-glucan-protein synthase [UDP-forming], p...	[more]
A0A0D2SDP3_GOSRA	2.218e-72	97.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
I1J637_SOYBN	5.085e-72	97.30	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2P8D5_GLYSO	5.085e-72	97.30	Alpha-1,4-glucan-protein synthase [UDP-forming] OS...	[more]
A0A061FYK1_THECC	7.485e-72	97.30	Reversibly glycosylated polypeptide 3 OS=Theobroma...	[more]
A0A0B0M9J5_GOSAR	8.385e-72	98.20	Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ...	[more]
A0A0D2S6I6_GOSRA	1.171e-71	97.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
K4BKY8_SOLLC	1.369e-71	97.30	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
B6T9G3_MAIZE	1.583e-71	97.30	Alpha-1,4-glucan-protein synthase 1 OS=Zea mays PE...	[more]
C5XDW6_SORBI	1.822e-71	97.30	Putative uncharacterized protein Sb02g038770 OS=So...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
UPTG1_SOLTU	3.757e-72	95.50	Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ...	[more]
RGP3_ORYSJ	7.289e-72	95.50	UDP-arabinopyranose mutase 3 OS=Oryza sativa subsp...	[more]
RGP1_ARATH	1.429e-71	94.59	UDP-arabinopyranose mutase 1 OS=Arabidopsis thalia...	[more]
UPTG2_SOLTU	2.050e-71	94.59	Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ...	[more]
UPTG_PEA	3.055e-71	93.69	Alpha-1,4-glucan-protein synthase [UDP-forming] OS...	[more]
RGP2_ARATH	4.314e-71	93.69	UDP-arabinopyranose mutase 2 OS=Arabidopsis thalia...	[more]
UPTG_MAIZE	5.406e-71	95.50	Alpha-1,4-glucan-protein synthase [UDP-forming] OS...	[more]
RGP1_ORYSJ	1.906e-70	92.79	UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp...	[more]
RGP3_ARATH	3.723e-69	91.89	UDP-arabinopyranose mutase 3 OS=Arabidopsis thalia...	[more]
RGP4_ARATH	9.250e-64	82.88	Probable UDP-arabinopyranose mutase 4 OS=Arabidops...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004901	Reversibly glycosylated polypeptide family	PFAM	PF03214	RGP	coord: 1..93 e-value: 1.1E-53 score: 182.5
None	No IPR available	PANTHER	PTHR31682:SF3	UDP-ARABINOPYRANOSE MUTASE 1-RELATED	coord: 1..93
None	No IPR available	PANTHER	PTHR31682	FAMILY NOT NAMED	coord: 1..93

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bp
CCTAAGTCTTCTTGTATCTCTTTCAAGGATTCTGCTTGTCGCTGCTTTGG
TTACATGGTTTCCAAGAAGAAGTACATTTATACCATTGATGATGATTGCT
TTGTTGCGAAAGATCCGTCCGGCAAAGACATTAACGCACTGGAGCAGCAC
ATAAAGAACCTTCTTTGTCCATCTACTCCGTTTTTCTTCAACACTCTCTA
TGACCCGTACCGAGCTGGTGCAGATTTCGTTCGTGGGTACCCATTCAGTC
TCCGTGAAGGTGTTCCCACTGCCGTTTCTCATGGCCTCTGGCTCAACATC
CCGGATTATGATGCACCAACTCAGCTTGTCAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR004901	RGP

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016866	intramolecular transferase activity

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g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

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