g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002393
Unique Nameg.arboreum_cottongen_reftransV1_0002393
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length333
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0002393:1..333 .
Chr1:70102141..70103141 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: B9RLK7_RICCO (Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1468610 PE=4 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.891e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRTGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2SDP3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.218e-72
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: I1J637_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.085e-72
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   78 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B2P8D5_GLYSO (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Glycine soja GN=glysoja_036788 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.085e-72
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   78 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYREGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A061FYK1_THECC (Reversibly glycosylated polypeptide 3 OS=Theobroma cacao GN=TCM_014329 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 7.485e-72
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B0M9J5_GOSAR (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Gossypium arboreum GN=F383_16975 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.385e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2S6I6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-71
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: K4BKY8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g114860.2 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.369e-71
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   71 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 181
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: B6T9G3_MAIZE (Alpha-1,4-glucan-protein synthase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.583e-71
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRVGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 185
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C5XDW6_SORBI (Putative uncharacterized protein Sb02g038770 OS=Sorghum bicolor GN=Sb02g038770 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.822e-71
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   75 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRVGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 185
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP5_ARATH (Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.482e-42
Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            S+   F   +CR FGY+VSKKKYI +IDDDC  AKDP G  ++A+ QH+ NL  P+TP FFNTLYDPY  GADFVRGYPFSLR GVP A S GLWLN+ D DAPTQ +K
Sbjct:   73 SNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALK 181
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp. japonica GN=UAM2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.375e-42
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            ++ I F   +CR FGY+VS+KKY+ +IDD+C  AKD  G  ++A+ QH+ NL  P+TPFFFNTLYDP+R GADFVRGYPFSLREGV   +S GLWL+  DYD  T +VK
Sbjct:   70 ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9RLK7_RICCO1.891e-7298.20Alpha-1,4-glucan-protein synthase [UDP-forming], p... [more]
A0A0D2SDP3_GOSRA2.218e-7297.30Uncharacterized protein OS=Gossypium raimondii GN=... [more]
I1J637_SOYBN5.085e-7297.30Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P8D5_GLYSO5.085e-7297.30Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
A0A061FYK1_THECC7.485e-7297.30Reversibly glycosylated polypeptide 3 OS=Theobroma... [more]
A0A0B0M9J5_GOSAR8.385e-7298.20Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
A0A0D2S6I6_GOSRA1.171e-7197.30Uncharacterized protein OS=Gossypium raimondii GN=... [more]
K4BKY8_SOLLC1.369e-7197.30Uncharacterized protein OS=Solanum lycopersicum GN... [more]
B6T9G3_MAIZE1.583e-7197.30Alpha-1,4-glucan-protein synthase 1 OS=Zea mays PE... [more]
C5XDW6_SORBI1.822e-7197.30Putative uncharacterized protein Sb02g038770 OS=So... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RGP5_ARATH1.482e-4265.14Probable UDP-arabinopyranose mutase 5 OS=Arabidops... [more]
RGP2_ORYSJ3.375e-4259.63Probable UDP-arabinopyranose mutase 2 OS=Oryza sat... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004901Reversibly glycosylated polypeptide familyPFAMPF03214RGPcoord: 1..93
e-value: 1.1E-53
score: 182.5
NoneNo IPR availablePANTHERPTHR31682:SF3UDP-ARABINOPYRANOSE MUTASE 1-RELATEDcoord: 1..93
NoneNo IPR availablePANTHERPTHR31682FAMILY NOT NAMEDcoord: 1..93

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bp
CCTAAGTCTTCTTGTATCTCTTTCAAGGATTCTGCTTGTCGCTGCTTTGG
TTACATGGTTTCCAAGAAGAAGTACATTTATACCATTGATGATGATTGCT
TTGTTGCGAAAGATCCGTCCGGCAAAGACATTAACGCACTGGAGCAGCAC
ATAAAGAACCTTCTTTGTCCATCTACTCCGTTTTTCTTCAACACTCTCTA
TGACCCGTACCGAGCTGGTGCAGATTTCGTTCGTGGGTACCCATTCAGTC
TCCGTGAAGGTGTTCCCACTGCCGTTTCTCATGGCCTCTGGCTCAACATC
CCGGATTATGATGCACCAACTCAGCTTGTCAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR004901RGP
Vocabulary: Biological Process
TermDefinition
GO:0030244cellulose biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016866intramolecular transferase activity