g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2T3Q3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 2.291e-75 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2QL16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 7.658e-74 Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2U6E0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 8.978e-74 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2T9B6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.122e-73 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B0NIW3_GOSAR (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Gossypium arboreum GN=F383_19676 PE=4 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 1.227e-73 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2RIS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 1.310e-73 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M1CAG9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024627 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.830e-73 Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK Sbjct: 79 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 189
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C6TJC8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 8.770e-73 Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: I1JEI0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 9.356e-73 Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B2RC63_GLYSO (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Glycine soja GN=glysoja_014782 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.053e-72 Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK Sbjct: 77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP5_ARATH (Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.482e-42 Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 S+ F +CR FGY+VSKKKYI +IDDDC AKDP G ++A+ QH+ NL P+TP FFNTLYDPY GADFVRGYPFSLR GVP A S GLWLN+ D DAPTQ +K Sbjct: 73 SNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALK 181
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp. japonica GN=UAM2 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.375e-42 Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1 Query: 7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333 ++ I F +CR FGY+VS+KKY+ +IDD+C AKD G ++A+ QH+ NL P+TPFFFNTLYDP+R GADFVRGYPFSLREGV +S GLWL+ DYD T +VK Sbjct: 70 ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 12
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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