g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002393
Unique Name	g.arboreum_cottongen_reftransV1_0002393
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002393:1..333 . Chr1:70102141..70103141 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2T3Q3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.291e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2QL16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G039800 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 7.658e-74
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYM+SKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLL PSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKASCISFKDSACRCFGYMISKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2U6E0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.978e-74
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2T9B6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.122e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B0NIW3_GOSAR (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Gossypium arboreum GN=F383_19676 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.227e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0D2RIS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G200200 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.310e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   76 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 186

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: M1CAG9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024627 PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.830e-73
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDP+GK+INALEQHIKNLLCPSTPFFFNTLYDPYR GADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   79 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKEINALEQHIKNLLCPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 189

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: C6TJC8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 8.770e-73
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: I1JEI0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 9.356e-73
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Match: A0A0B2RC63_GLYSO (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Glycine soja GN=glysoja_014782 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.053e-72
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1

Query:    1 PKSSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            PK+SCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREG PTAVSHGLWLNIPDYDAPTQLVK
Sbjct:   77 PKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVK 187

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP5_ARATH (Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.482e-42
Identity = 71/109 (65.14%), Postives = 82/109 (75.23%), Query Frame = 1

Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            S+   F   +CR FGY+VSKKKYI +IDDDC  AKDP G  ++A+ QH+ NL  P+TP FFNTLYDPY  GADFVRGYPFSLR GVP A S GLWLN+ D DAPTQ +K
Sbjct:   73 SNSTMFSGYSCRYFGYLVSKKKYIVSIDDDCVPAKDPKGFLVDAVTQHVINLENPATPLFFNTLYDPYCEGADFVRGYPFSLRSGVPCAASCGLWLNLADLDAPTQALK 181

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp. japonica GN=UAM2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.375e-42
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1

Query:    7 SSCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPFFFNTLYDPYRAGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVK 333
            ++ I F   +CR FGY+VS+KKY+ +IDD+C  AKD  G  ++A+ QH+ NL  P+TPFFFNTLYDP+R GADFVRGYPFSLREGV   +S GLWL+  DYD  T +VK
Sbjct:   70 ATSIDFSGHSCRYFGYLVSRKKYVISIDDNCLPAKDNGGLTVDAVAQHMSNLKTPATPFFFNTLYDPFRKGADFVRGYPFSLREGVECMLSCGLWLHNADYDPMTHVVK 178

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2T3Q3_GOSRA	2.291e-75	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QL16_GOSRA	7.658e-74	97.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2U6E0_GOSRA	8.978e-74	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2T9B6_GOSRA	1.122e-73	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NIW3_GOSAR	1.227e-73	100.00	Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ...	[more]
A0A0D2RIS0_GOSRA	1.310e-73	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
M1CAG9_SOLTU	3.830e-73	96.40	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
C6TJC8_SOYBN	8.770e-73	98.20	Putative uncharacterized protein OS=Glycine max PE...	[more]
I1JEI0_SOYBN	9.356e-73	98.20	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A0B2RC63_GLYSO	1.053e-72	98.20	Alpha-1,4-glucan-protein synthase [UDP-forming] OS...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
RGP5_ARATH	1.482e-42	65.14	Probable UDP-arabinopyranose mutase 5 OS=Arabidops...	[more]
RGP2_ORYSJ	3.375e-42	59.63	Probable UDP-arabinopyranose mutase 2 OS=Oryza sat...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004901	Reversibly glycosylated polypeptide family	PFAM	PF03214	RGP	coord: 1..93 e-value: 1.1E-53 score: 182.5
None	No IPR available	PANTHER	PTHR31682:SF3	UDP-ARABINOPYRANOSE MUTASE 1-RELATED	coord: 1..93
None	No IPR available	PANTHER	PTHR31682	FAMILY NOT NAMED	coord: 1..93

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002393 ID=g.arboreum_cottongen_reftransV1_0002393; Name=g.arboreum_cottongen_reftransV1_0002393; organism=Gossypium arboreum; type=contig; length=333bp
CCTAAGTCTTCTTGTATCTCTTTCAAGGATTCTGCTTGTCGCTGCTTTGG
TTACATGGTTTCCAAGAAGAAGTACATTTATACCATTGATGATGATTGCT
TTGTTGCGAAAGATCCGTCCGGCAAAGACATTAACGCACTGGAGCAGCAC
ATAAAGAACCTTCTTTGTCCATCTACTCCGTTTTTCTTCAACACTCTCTA
TGACCCGTACCGAGCTGGTGCAGATTTCGTTCGTGGGTACCCATTCAGTC
TCCGTGAAGGTGTTCCCACTGCCGTTTCTCATGGCCTCTGGCTCAACATC
CCGGATTATGATGCACCAACTCAGCTTGTCAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR004901	RGP

Vocabulary: **Biological Process**
Term	Definition
GO:0030244	cellulose biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016866	intramolecular transferase activity

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g.arboreum_cottongen_reftransV1_0002393, g.arboreum_cottongen_reftransV1_0002393 (contig) Gossypium arboreum

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