g.arboreum_cottongen_reftransV1_0017722, g.arboreum_cottongen_reftransV1_0017722 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017722
Unique Nameg.arboreum_cottongen_reftransV1_0017722
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1847
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeg.arboreum_cottongen_reftransV1_0017722:1..1847 .
Chr11:63024917..63028626 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: A0A072V293_MEDTR (Acyl-CoA-binding domain protein OS=Medicago truncatula GN=MTR_3g491870 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 7.668e-133
Identity = 239/359 (66.57%), Postives = 282/359 (78.55%), Query Frame = 3 
Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSN-VQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAM-GKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQRAGKVE 1298
            DWQ LLQSIF+GLIFSYLLAKLIS+VVSF ++NL+ITR  + N V  ++        S+P     H    +++SV+AE GSIR ES   GD   DDD   WEGVE TELD+AFSAATAFVAAAAADRLSQKV N+VQLQLYGLYKIATEGPC+  QPS LKMTARAKWQAW KLGAMPPEDAMQKYID+V+ELYP+W  G+ +  K G     S + +GPMGPVFSSFVYEEE  +D KMDAIH FAREGD+ NLLK IESGVSV+L+DSEGRTP+HWAVDRGHL + E L+ RNA+VNAKDN+GQTPLHYAV CERE IA++LVK +AD  ++DNDG+S  D+C S WP++Q   +V+
Sbjct:    6 DWQSLLQSIFIGLIFSYLLAKLISIVVSFNNENLTITRNTNPNAVVSHDDTKQDDVVSDP----GHRPEAEAESVMAEQGSIRNESVDGGDDDYDDD---WEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGPSSEARGPMGPVFSSFVYEEECGSDSKMDAIHGFAREGDMTNLLKCIESGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGRNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSRDICSSKWPFMQHEEEVK 357
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: V4KYU6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014004mg PE=4 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 2.053e-132
Identity = 228/355 (64.23%), Postives = 283/355 (79.72%), Query Frame = 3 
Query:  222 MADWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSNVQG-YEKIDDS-GSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQ 1280
            M DW QL QS+ LGLIF+YLLAKLIS++V+FKD+NLS+TR   +  +  Y K++ S G G E            +DS+VAE GS+R + D D D  DDD    WEGVE TELD+AFSAATAFVAAAA+DRLSQKV N++QLQLYG YKIATEGPCTAPQPSALKMTARAKWQAW KLGAMPPE+AM+KYID+VT+LYP+W  G + G+  + +AS  + +  MGPVFSS VYEEESEN+LK+DA+H FAREG+++NLLK IE+G+ V+ +DSEGRTP+HWA+DRGHL +A+AL+ + A+VNAKDNEGQT LHYAVMCERE +A+FLV+Q AD   KD DGNSP+DLC+S W +++
Sbjct:    1 MGDWYQLAQSVILGLIFAYLLAKLISILVAFKDENLSLTRNHETQSENDYRKVESSTGIGGE------------TDSLVAEQGSLRGDEDDDDDDEDDD----WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNDLQLQLYGFYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKGRNRSGDASGSNSRAAMGPVFSSLVYEEESENELKIDAVHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAKALVDKKADVNAKDNEGQTSLHYAVMCEREALAEFLVEQKADTTIKDEDGNSPLDLCESEWSFMR 339
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: A0A0D3AMG1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 3.237e-132
Identity = 224/354 (63.28%), Postives = 275/354 (77.68%), Query Frame = 3 
Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITR---ARSSNVQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQ 1280
            DW QL QS+  GLIF+YLLAKLIS++V+FKDDNLS+TR   A  S  + Y K+D S                ++DS+VAE GS+R + D D D         WEGVE TELD+AFSAATAFVAAAA+DRLSQKV NE+QLQLYG YKIATEG CTAPQPSALKMTARAKWQAW K+GAMP E+AM+KYID+VT LYP+W  G + G+    +A+  + + PMGPVFSS VYEEES+N+LK+DA+H FAREG+++NLLK IESG+ V+ +DSEGRTP+HWA+DRGHL +A+AL+ +NA+VNAKDNEGQT LHYAV+CERE +A+FLVKQ AD   KD DGNSP+DLC+S W W++
Sbjct:    4 DWFQLAQSLIFGLIFAYLLAKLISILVAFKDDNLSLTRSHDAAQSENEYYRKVDSSAG--------------ETDSLVAEQGSLRGDEDDDDD---------WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGFYKIATEGACTAPQPSALKMTARAKWQAWQKMGAMPAEEAMEKYIDLVTHLYPAWVEGGSKGRNRTGDAAGSNSRAPMGPVFSSLVYEEESDNELKIDAVHAFAREGEVENLLKCIESGIPVNARDSEGRTPLHWAIDRGHLNVAKALVDKNADVNAKDNEGQTALHYAVVCEREALAEFLVKQKADTSIKDEDGNSPLDLCESEWSWMR 334
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: I3SFA2_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 9.682e-132
Identity = 237/359 (66.02%), Postives = 282/359 (78.55%), Query Frame = 3 
Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSN-VQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAM-GKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQRAGKVE 1298
            DWQ LLQSIF+GLIFSYLLAKLIS+VVSF ++NL+ITR  + N V  ++        S+P     H    +++SV+AE GSIR+ES   GD   DDD   WEGVE TELD+AFSAATAFVAAAAADRLSQKV N+VQLQLYGLYKIATEGPC+  QPS LKMTARAKWQAW KLGAMPPEDAMQKYID+V+ELYP+W  G+ +  K G     S + +GPMGPVFSSFVYEEE  +D KMDAIH FAREGD+ NLLK IESGVSV+L+DSEGRTP+HWAVDRGHL + E L+ +NA+VNAKDN+GQTPLHYAV CERE IA++LVK +AD  ++DNDG+S  D+C   WP++Q   +V+
Sbjct:    6 DWQSLLQSIFIGLIFSYLLAKLISIVVSFNNENLTITRNTNPNAVVSHDDTKQDDVVSDP----GHRPEAEAESVMAEQGSIRSESVDGGDDDYDDD---WEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWRKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGPSSEARGPMGPVFSSFVYEEECGSDSKMDAIHGFAREGDMTNLLKCIESGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGKNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSRDICSFKWPFMQHEEEVK 357
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: R0GMU2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026721mg PE=4 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.590e-131
Identity = 231/352 (65.62%), Postives = 280/352 (79.55%), Query Frame = 3 
Query:  222 MADWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSNVQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWL 1277
            M DW Q  QS+ LGLIF+YLLAKLIS++V+FKD+NLS+TR  S+  + YE +    S +   G TE        S+VAE GS+R E D D    +DDDD  WEGVE TELD+AFSAATAFVAAAA+DRLSQKV NE QLQLYGLYKIATEGPCTAPQPSA+KMTARAKWQAW KLGAMPPE+AM+KYID+VT+LYP+W     +  G      + D  GPMGPVFSS VYEEESEN+LK+DAIH FAREG+++NLLK +E+G+ V+ +DSEGRTP+HWA+DRGH+ +A+AL+ +NA+VNAKDNEGQT LHYAV+CERE IA++LVKQ AD   KD+DGNSP+DLC+S WPW+
Sbjct:    1 MGDWYQFAQSVILGLIFAYLLAKLISILVAFKDENLSLTRDHSTESE-YENLRKVESSTGIGGETE--------SLVAEQGSLRGEEDDDESDDEDDDD--WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNEFQLQLYGLYKIATEGPCTAPQPSAIKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAW-----VDAGSKKKNRTGDAPGPMGPVFSSLVYEEESENELKIDAIHAFAREGEVENLLKCLENGIPVNARDSEGRTPLHWAIDRGHMNVAKALIDQNADVNAKDNEGQTSLHYAVVCEREAIAEYLVKQKADTTIKDDDGNSPLDLCESEWPWM 336
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: YQMA_SCHPO (Ankyrin repeat-containing protein P1E11.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP1E11.10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.421e-12
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:  960 AREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQ-NADKDTKDNDG 1235
            A +G  D +LK ++SG+S +  D  G TP+H AV  GH  + + L+ R  ++N +D +G+TPL    +CE+ +IA  L+ Q NAD   K+NDG
Sbjct:   12 ASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL---FVCEKLEIAHDLINQYNADTTVKNNDG 101
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_RABIT (Ankyrin repeat domain-containing protein 1 OS=Oryctolagus cuniculus GN=ANKRD1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.482e-12
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  AIH   R G+L+ L   +  G  +  +D    T +H AV  GH + AE L++  A++NAKD EG TPLH AV   R  + + L+   AD   K++ G +P+DL
Sbjct:  185 LESTAIHWACRGGNLEVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPLHDAVRLNRYKMIRLLIMYGADLTIKNSAGKTPMDL 291

HSP 2 Score: 63.929 bits (154), Expect = 1.022e-9
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ K  A+H    EG L  + K +E+G  +  +D    T +HWA   G+L++ + LL++ A ++A+D    T LH AV     + A+ L+   AD + KD +G++P+
Sbjct:  150 DEYKRTALHRACLEGHLAIVEKLMEAGAQIEFRDMLESTAIHWACRGGNLEVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPL 256
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR2_MOUSE (Ankyrin repeat domain-containing protein 2 OS=Mus musculus GN=Ankrd2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.289e-12
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 3 
Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ +  A+H  + EG ++ L K +E+G +V  QD    T MHWA   GHL++   L SR A+ N +D    TPLH AV     +I +  +    D + KD +G+S +
Sbjct:  147 DEFRRTALHRASLEGHMEILEKLLENGATVDFQDRLDCTAMHWACRGGHLEVVRLLQSRGADTNVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSAL 253

HSP 2 Score: 67.3958 bits (163), Expect = 9.690e-11
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  933 LKMDAIHTFAREGDLD--NLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLC 1256
            L   A+H   R G L+   LL+S   G   +++D    TP+H AV  GH++I E  LS   ++NAKD EG + LH AV   R  I K L+   AD   K+  G +P DL 
Sbjct:  182 LDCTAMHWACRGGHLEVVRLLQS--RGADTNVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMAKNLAGKTPTDLV 289
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: AKRP_ARATH (Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.827e-12
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 3 
Query: 1026 DSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLC 1256
            D EG T MH+AV        + LL  NA++NA+D +G TPLH AV   R DI K L+ + AD + K+ DG +P+ LC
Sbjct:  323 DDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGLC 399
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKE1_MOUSE (Ankyrin repeat and EF-hand domain-containing protein 1 OS=Mus musculus GN=Ankef1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.988e-12
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 3 
Query:  948 IHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            I    + GDL +L K+IE+G+ V ++D+  +TP+  A   G++ + + L+ + ANVNA DN   TPLH+A    ++DI + LVK  A  D    + ++P+
Sbjct:  496 ISFITKAGDLASLKKAIETGIPVDMKDNTYKTPLMIACASGNIDVVKFLIEKGANVNATDNFLWTPLHFACHAGQQDIVELLVKAGASIDATSINNSTPL 595
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A072V293_MEDTR7.668e-13366.57Acyl-CoA-binding domain protein OS=Medicago trunca... [more]
V4KYU6_EUTSA2.053e-13264.23Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A0D3AMG1_BRAOL3.237e-13263.28Uncharacterized protein OS=Brassica oleracea var. ... [more]
I3SFA2_MEDTR9.682e-13266.02Uncharacterized protein OS=Medicago truncatula PE=... [more]
R0GMU2_9BRAS1.590e-13165.63Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
YQMA_SCHPO1.421e-1240.86Ankyrin repeat-containing protein P1E11.10 OS=Schi... [more]
ANKR1_RABIT1.482e-1238.32Ankyrin repeat domain-containing protein 1 OS=Oryc... [more]
ANKR2_MOUSE5.289e-1234.58Ankyrin repeat domain-containing protein 2 OS=Mus ... [more]
AKRP_ARATH6.827e-1245.45Ankyrin repeat domain-containing protein, chloropl... [more]
ANKE1_MOUSE6.988e-1236.00Ankyrin repeat and EF-hand domain-containing prote... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 339..353
score: 27.44
coord: 291..306
score: 37.48
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 323..352
e-value: 2.5E-4
score: 30.4
coord: 290..319
e-value: 3.5E-7
score: 39.9
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 290..322
score: 14.88
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 323..355
score: 12.957
IPR000582Acyl-CoA-binding protein, ACBPPRINTSPR00689ACOABINDINGPcoord: 152..170
score: 48.12
coord: 196..213
score: 37.3
coord: 175..190
score: 36.31
IPR000582Acyl-CoA-binding protein, ACBPPFAMPF00887ACBPcoord: 131..214
e-value: 3.3E-27
score: 94.3
IPR000582Acyl-CoA-binding protein, ACBPPROSITEPS51228ACB_2coord: 129..219
score: 42.478
IPR000582Acyl-CoA-binding protein, ACBPSUPERFAMILY47027Acyl-CoA binding proteincoord: 129..217
NoneNo IPR availablePFAMPF13637Ank_4coord: 292..344
e-value: 2.3E-13
score: 50.2
NoneNo IPR availablePANTHERPTHR24119FAMILY NOT NAMEDcoord: 104..374
coord: 7..83
NoneNo IPR availablePANTHERPTHR24119:SF0ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6coord: 104..374
coord: 7..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..378
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..50
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 254..364
e-value: 1.7E-32
score: 111.7
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 257..363
score: 32.041
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 255..367
IPR014352FERM/acyl-CoA-binding protein, 3-helical bundleGENE3D1.20.80.10coord: 128..219
e-value: 6.8E-30
score: 102.4

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017722 ID=g.arboreum_cottongen_reftransV1_0017722; Name=g.arboreum_cottongen_reftransV1_0017722; organism=Gossypium arboreum; type=contig; length=1847bp
GAGATTACTACACCTTTGGTTTGGTTTCTCCGGCGCCAATGTTTTCTAAA
CAATAATATACAAAATTAAAGGGAAAAAGAGGAAATTTTTATCTTCTTCA
ATTTCCGACAAGATTTATAGGGTTTTAGCTTAACTACGATGCAAAGATGC
TTCATTTCTAGTGTTTGTGTTTTTTAGGGTTGGATTTTGATTTTATGTCT
GGGTTTTGGTTGATTGATTCCATGGCTGACTGGCAACAGCTTTTGCAATC
GATTTTCTTAGGTCTTATATTCTCTTATCTTCTAGCGAAGCTAATCTCCT
TAGTCGTTTCTTTCAAAGACGATAACCTTTCGATAACCCGAGCCCGAAGC
AGCAATGTCCAGGGCTACGAGAAAATCGACGATTCGGGTTCCGGATCCGA
ACCGATTGGAAGTACTGAGCACTTGGGACTGCACAAGTCGGATTCGGTAG
TCGCAGAATTGGGAAGTATTAGGGCCGAGAGTGATGGCGATGGTGATGGC
GTGGATGATGACGACGACGACGATTGGGAAGGGGTGGAGTGTACGGAACT
GGATGATGCTTTCAGTGCGGCAACGGCGTTCGTGGCGGCTGCCGCGGCTG
ATCGGTTGTCGCAGAAGGTTCCGAACGAGGTGCAGTTGCAGCTTTACGGT
TTGTACAAGATTGCCACCGAAGGGCCTTGCACTGCTCCGCAGCCTTCCGC
TTTGAAAATGACGGCTCGTGCTAAGTGGCAAGCATGGCACAAATTGGGTG
CTATGCCTCCAGAGGATGCAATGCAGAAATACATTGATGTTGTGACAGAG
CTATATCCATCTTGGGCTGCTGGTTCAGCTATGGGCAAAGGTGGGGCTGA
TAATGCTTCAAGTAAAGATGTCAAAGGACCAATGGGACCGGTTTTCAGCT
CTTTTGTGTATGAAGAGGAATCTGAAAATGATTTGAAAATGGATGCTATC
CACACTTTTGCCAGAGAAGGAGATCTGGATAATTTGCTTAAAAGCATTGA
AAGTGGTGTTTCTGTGCATTTGCAAGACAGTGAAGGGAGGACCCCGATGC
ATTGGGCTGTAGATCGTGGCCATCTTAAAATTGCCGAAGCACTTCTTAGC
AGGAATGCTAATGTGAATGCTAAGGACAATGAAGGTCAAACCCCATTGCA
CTATGCTGTTATGTGTGAGAGGGAAGACATTGCCAAATTTCTTGTAAAAC
AAAATGCAGACAAAGATACGAAGGATAACGACGGCAACTCTCCAGTCGAC
CTGTGTGACTCAGGTTGGCCTTGGTTGCAACGTGCAGGCAAAGTGGAATG
ACCTTTGTTTTATTCCCAAGTTTGGTTTCAGTTAAAAAGTACTTGAAAAA
ATTTCTCATGGATGTATATGGGTATAAGCAACCTTTTGCACTTCTTTCCT
TAGTTATATGCTAATGTGGGGTACTCTGATGTTCATTGGCCTCACCTCCT
TAAGTACTGCTTTCTTTACCACCATAAGTAGATGGAAAAGAATTGGAAGG
TGGCTTTAGCCGGTGAAATGGAATTCTGATACCATCATTTGTTTGGATAG
AGTCTAGAGGTATGTAGCCGGACATGGCCAGAGAAGTTGGATGCTACTCT
TCAAAGGGATCCAATGCGGGCAGTGCAGTGAACCTAATTAGTTGTTTGAT
CTGATGGTAGATATGATAAACCGTAGATTCCATCACCCTAAATCTGTTCC
CATCAAACGGAGGCTCCGTCACCCTAAAAACTGATGTAATTTCACAATAT
AAACGGGCAAACTGCTTAAGATTACTTATCCTGCTTCACTAAAAAGTTTC
TACTGCCTGATGAAGATGTCATGATCAAAACTTTGCCTCTTATCTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR000582Acyl-CoA-binding_protein
IPR020683Ankyrin_rpt-contain_dom
IPR014352FERM/acyl-CoA-bd_prot_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000062fatty-acyl-CoA binding